NO23G00030.1, NO23G00030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00030.1
Unique NameNO23G00030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length855
Alignment locationchr23:15842..16696 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:15842..16696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO23G00030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00030NO23G00030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00030.1NO23G00030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00030.1.cds1NO23G00030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00030.1 ID=NO23G00030.1|Name=NO23G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=855bp
CAAACATACCCCCCAACCACCATCAGCTGACACTCTGCTGACACTCTGCA
TCCACACATGTACATGTAATTACACGCACCATATGAACGCGCCTGAGTAC
GAATGTACACCTGTATGCACGCATCTATGCACTCCGCACAAGCACCAGCA
GCTGCAGCGGCTGCCACCATCAACAGCAGCTGCAGCAGTACAGAAGTGGC
ATCTGTGAAGGAAGCGGAAACAGCATTGGTAGTAGTGGTTTCAGCAGTTG
TAATGGCTGCAGCAGCACAGGCAACAGCTATTGTAGTGGTAGCAGTAGCA
GCAGCAGGAGCCATAGCAATGGCGACACAAGCCCCACAAGCACCGCCACA
ACCACAACGCACCGCGTCGCCACCGCCACCACTACCACTACCACTACCAC
CAGGTCCATCACAACCAGCGCAGAAGGCAGGGAGTGGTGGTATTGCAGCA
GCAACTATGGCTATACCAACGGCACTTCCAACCAATCAACAACAACCACT
AACACGGGCCACCGTCGTTGCCACCGAGTCTACAGCTACTACCCGAAGCA
AGTGCCGCTTTCCCAAAAAAGTGAGGAGCAGGCCTACTTTCTCCGGCAGT
GCCCGCCAATCATCAGCGTCCAGTCTCAGAAACCGTTCGGCACCAAAAAA
GATAATATGTGCTGTGCCTTGATCGACTAAATATGGGGTATGTCCATCTT
CTTCCTGCCCATTCTAGGAAAGAAGGTCTTGATCTCCCCCGTCGCTTTAG
GTGGAGGGAGGAATGAGCTGGCCCATGTCCATGCGTATATTTGAATGACA
GAGGAGGAACGTAAAGCAACTGAGAACATTAAAAGTAAAGAATTGTAATG
ATGGG
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protein sequence of NO23G00030.1

>NO23G00030.1-protein ID=NO23G00030.1-protein|Name=NO23G00030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MYTCMHASMHSAQAPAAAAAATINSSCSSTEVASVKEAETALVVVVSAVV
MAAAAQATAIVVVAVAAAGAIAMATQAPQAPPQPQRTASPPPPLPLPLPP
GPSQPAQKAGSGGIAAATMAIPTALPTNQQQPLTRATVVATESTATTRSK
CRFPKKVRSRPTFSGSARQSSASSLRNRSAPKKIICAVP*
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mRNA from alignment at chr23:15842..16696-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00030.1 ID=NO23G00030.1|Name=NO23G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=855bp|location=Sequence derived from alignment at chr23:15842..16696- (Nannochloropsis oceanica)
CAAACATACCCCCCAACCACCATCAGCTGACACTCTGCTGACACTCTGCA
TCCACACATGTACATGTAATTACACGCACCATATGAACGCGCCTGAGTAC
GAATGTACACCTGTATGCACGCATCTATGCACTCCGCACAAGCACCAGCA
GCTGCAGCGGCTGCCACCATCAACAGCAGCTGCAGCAGTACAGAAGTGGC
ATCTGTGAAGGAAGCGGAAACAGCATTGGTAGTAGTGGTTTCAGCAGTTG
TAATGGCTGCAGCAGCACAGGCAACAGCTATTGTAGTGGTAGCAGTAGCA
GCAGCAGGAGCCATAGCAATGGCGACACAAGCCCCACAAGCACCGCCACA
ACCACAACGCACCGCGTCGCCACCGCCACCACTACCACTACCACTACCAC
CAGGTCCATCACAACCAGCGCAGAAGGCAGGGAGTGGTGGTATTGCAGCA
GCAACTATGGCTATACCAACGGCACTTCCAACCAATCAACAACAACCACT
AACACGGGCCACCGTCGTTGCCACCGAGTCTACAGCTACTACCCGAAGCA
AGTGCCGCTTTCCCAAAAAAGTGAGGAGCAGGCCTACTTTCTCCGGCAGT
GCCCGCCAATCATCAGCGTCCAGTCTCAGAAACCGTTCGGCACCAAAAAA
GATAATATGTGCTGTGCCTTGATCGACTAAATATGGGGTATGTCCATCTT
CTTCCTGCCCATTCTAGGAAAGAAGGTCTTGATCTCCCCCGTCGCTTTAG
GTGGAGGGAGGAATGAGCTGGCCCATGTCCATGCGTATATTTGAATGACA
GAGGAGGAACGTAAAGCAACTGAGAACATTAAAAGTAAAGAATTGTAATG
ATGGG
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Coding sequence (CDS) from alignment at chr23:15842..16696-

>NO23G00030.1 ID=NO23G00030.1|Name=NO23G00030.1|organism=Nannochloropsis oceanica|type=CDS|length=570bp|location=Sequence derived from alignment at chr23:15842..16696- (Nannochloropsis oceanica)
ATGTACACCTGTATGCACGCATCTATGCACTCCGCACAAGCACCAGCAGC
TGCAGCGGCTGCCACCATCAACAGCAGCTGCAGCAGTACAGAAGTGGCAT
CTGTGAAGGAAGCGGAAACAGCATTGGTAGTAGTGGTTTCAGCAGTTGTA
ATGGCTGCAGCAGCACAGGCAACAGCTATTGTAGTGGTAGCAGTAGCAGC
AGCAGGAGCCATAGCAATGGCGACACAAGCCCCACAAGCACCGCCACAAC
CACAACGCACCGCGTCGCCACCGCCACCACTACCACTACCACTACCACCA
GGTCCATCACAACCAGCGCAGAAGGCAGGGAGTGGTGGTATTGCAGCAGC
AACTATGGCTATACCAACGGCACTTCCAACCAATCAACAACAACCACTAA
CACGGGCCACCGTCGTTGCCACCGAGTCTACAGCTACTACCCGAAGCAAG
TGCCGCTTTCCCAAAAAAGTGAGGAGCAGGCCTACTTTCTCCGGCAGTGC
CCGCCAATCATCAGCGTCCAGTCTCAGAAACCGTTCGGCACCAAAAAAGA
TAATATGTGCTGTGCCTTGA
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Synonyms
Publications