NO22G02190.1, NO22G02190.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO22G02190.1
Unique Name	NO22G02190.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1365
Alignment location	chr22:688595..692705 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr22	genome	chr22:688595..692705 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO22G02190.1 vs.
Match: EWM22250.1 (aspartic protease [Nannochloropsis gaditana])

HSP 1 Score: 294.3 bits (752), Expect = 6.600e-76
Identity = 155/331 (46.83%), Postives = 207/331 (62.54%), Query Frame = 0

Query:   86 QGEIILKNYQNVEYFGEIQIGSQNQTFSVIFDTGSSNTWVPSMKCALSCTGKSLFRAADSSTFREVGDEFKVRYGSGTVKGFFSEDSMTVAGFRIEKQIFAEVTDASGLGRTYQMGQFDGILGMGFESLAVGGVKTPMFNLLDQGLIEEGVFAFFLGADEPGELTVGGVNHDRYEGELAYTPLKNASYWAVALGTVVSLNGAGHRQEYHKATTAIIDSGTSLLVGPEEEVKGIARSMGAV-FNHWEDVWVLDDCLHRDIPSLTFNIGGKEYLIEKEDYIFYDPSSNQCVLGMITFPY-----PIWILGDVFMRRYYSVFDYENERLGLAPA 411
            +G+II+ +  N +YFGEI +GS  Q F VIFDTGSSN W+PS  C  SC  K+ +    S T+ E G  FK+ YGSG V+G+FSED + + G  I +Q FAEVTDASGLG  +  G FDGILG+GF+S++VG V TP  NL+ QGL+ E VF+F+LG + PGELT+GG +   Y+G++ Y PLK+A+YW VAL  V       H        +AIIDSGTSL+ GP++EV  +A+ +GA  F   E    L DC +   P + F I G+ Y +  +DY   D     C+   +         P+WILGD FMRRYY+ F+YE + +GLA A
Sbjct:   53 EGDIIISDVSNAQYFGEISVGSDRQAFQVIFDTGSSNLWIPSEDCLASCASKAKYDHDASDTYVENGAIFKIMYGSGPVQGYFSEDDVELGGLTISQQAFAEVTDASGLGAAFAAGSFDGILGLGFDSISVGKVTTPFHNLIKQGLVAEPVFSFYLGDNAPGELTLGGTDPAHYKGDIHYVPLKSATYWEVALEDV-----QVHGLSLTNVDSAIIDSGTSLITGPKKEVAKLAKLVGATRFILGE---YLIDC-NAQGPDIDFVIDGRTYSLSADDYKIRD--GGLCLFAFMGLDIPRPSGPLWILGDSFMRRYYTTFNYEKQTVGLALA 372

The following BLAST results are available for this feature:

BLAST of NO22G02190.1 vs.

BLAST of NO22G02190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM22250.1	6.600e-76	46.83	aspartic protease [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO22G02190	NO22G02190	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO22G02190.1	NO22G02190.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO22G02190.1.cds1	NO22G02190.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02190.1.cds2	NO22G02190.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02190.1.cds3	NO22G02190.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02190.1.cds4	NO22G02190.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02190.1.cds5	NO22G02190.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02190.1.cds6	NO22G02190.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02190.1.cds7	NO22G02190.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02190.1.cds8	NO22G02190.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02190.1.cds9	NO22G02190.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02190.1.cds10	NO22G02190.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02190.1.cds11	NO22G02190.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02190.1.cds12	NO22G02190.1.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02190.1.cds13	NO22G02190.1.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02190.1.cds14	NO22G02190.1.cds14	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02190.1.cds15	NO22G02190.1.cds15	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr22:688595..692705+
coding sequence from alignment at chr22:688595..692705+

mRNA sequence

>NO22G02190.1 ID=NO22G02190.1|Name=NO22G02190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1365bp
ATGAAGAGGGGACTCGTCCTCCTTGCGCTCTATGCGGGTTGCGCGGCCGC
TGTCGTCCAAATTCCTTTAAAGCGGATGGAGCCGACCGAGAACAGGATGA
AGGCGGCATTGACCAGGATCAAGAGCCGCGTCGACAGCGCCAACAAGCAG
GCCATGGCCCGTCTCCGCGGATCGGGGGAGGACCCCGCCCTCCTCACCCC
TATGAGCATGGAAGACCTCGCAGGAGGGGACAAGGCCGTGAGCGCTCCCC
GAATCCAGGGAGAGATCATCCTCAAAAACTACCAGAATGTGGAGTACTTT
GGCGAAATTCAGATCGGGTCACAAAATCAAACTTTTTCGGTCATCTTCGA
CACGGGAAGCAGCAACACATGGGTACCGTCCATGAAGTGCGCCTTGTCAT
GCACGGGCAAGAGCCTCTTTCGGGCCGCCGACAGCTCCACCTTCAGGGAG
GTCGGCGACGAGTTCAAGGTCCGTTACGGCTCGGGTACTGTCAAAGGCTT
CTTCTCCGAGGACTCCATGACCGTTGCGGGCTTTCGCATCGAGAAGCAAA
TATTCGCCGAAGTCACAGACGCCAGTGGCCTAGGGCGCACCTACCAGATG
GGCCAATTCGACGGTATCCTGGGCATGGGATTCGAGTCTCTGGCCGTCGG
GGGCGTCAAGACCCCGATGTTCAATCTCCTTGATCAGGGCCTGATCGAGG
AGGGTGTCTTCGCCTTCTTCCTAGGCGCCGACGAGCCGGGGGAGCTGACG
GTGGGGGGGGTCAATCACGATCGGTATGAGGGTGAGCTCGCCTACACGCC
TCTCAAGAACGCTTCCTATTGGGCAGTCGCCCTGGGCACGGTGGTATCCT
TGAACGGGGCGGGCCACCGCCAGGAGTACCATAAGGCCACCACCGCCATC
ATTGACTCAGGCACTTCCCTTCTGGTCGGTCCCGAGGAGGAGGTCAAGGG
AATCGCAAGGTCCATGGGCGCGGTGTTCAACCATTGGGAAGACGTGTGGG
TGCTTGACGACTGCCTGCACAGGGACATTCCTTCGCTCACCTTCAACATC
GGAGGCAAAGAGTACCTGATTGAGAAGGAGGACTACATTTTCTACGACCC
GAGCTCGAATCAGTGCGTGCTGGGCATGATCACCTTCCCCTACCCCATCT
GGATCCTCGGCGACGTGTTCATGCGGCGGTACTACTCCGTCTTCGACTAC
GAGAATGAGCGCCTCGGCCTCGCCCCTGCCAGAGCAACGGGTTCGGCTCC
TAACGCGACGGACGCTCGCGCAGGCAAGCCCCCCGTGCCGAATGCCATGC
CAGGCGGCGCGGGCGGCGACGGCGTCGCCGTTCCTTCGATGGAGAATGCA
GATGGCAAGAATTAA

protein sequence of NO22G02190.1

>NO22G02190.1-protein ID=NO22G02190.1-protein|Name=NO22G02190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=455bp
MKRGLVLLALYAGCAAAVVQIPLKRMEPTENRMKAALTRIKSRVDSANKQ
AMARLRGSGEDPALLTPMSMEDLAGGDKAVSAPRIQGEIILKNYQNVEYF
GEIQIGSQNQTFSVIFDTGSSNTWVPSMKCALSCTGKSLFRAADSSTFRE
VGDEFKVRYGSGTVKGFFSEDSMTVAGFRIEKQIFAEVTDASGLGRTYQM
GQFDGILGMGFESLAVGGVKTPMFNLLDQGLIEEGVFAFFLGADEPGELT
VGGVNHDRYEGELAYTPLKNASYWAVALGTVVSLNGAGHRQEYHKATTAI
IDSGTSLLVGPEEEVKGIARSMGAVFNHWEDVWVLDDCLHRDIPSLTFNI
GGKEYLIEKEDYIFYDPSSNQCVLGMITFPYPIWILGDVFMRRYYSVFDY
ENERLGLAPARATGSAPNATDARAGKPPVPNAMPGGAGGDGVAVPSMENA
DGKN*

mRNA from alignment at chr22:688595..692705+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO22G02190.1 ID=NO22G02190.1|Name=NO22G02190.1|organism=Nannochloropsis oceanica|type=mRNA|length=4111bp|location=Sequence derived from alignment at chr22:688595..692705+ (Nannochloropsis oceanica)
ATGAAGAGGGGACTCGTCCTCCTTGCGCTCTATGCGGGTTGCGCGGCCGC
TGTCGTCCAAATTCCTTTAAAGGTAGGCAAATTGAGGGATCGGGAGGACG
GCGGGTGTGGAAAGGCAGGGAAAGCGGGAAGCAAGGGAAGAAGATGGTGA
GGGATGAACATGATATTTGAATGAGGAGAAGGCCACCGTGCAGGGTGACG
GCGGAAGTGTCTATCGGAATGAGAGATATGCGGTGGAAGATGCAAGGAGG
GAAACAGAGTGTTTGAAAGTGGTTTTTAAAGAGGATTCACATGTCATAAA
GACCTATGTGAAGCCCCGCCTCTACTTACGACGATCCTCCATCCCTCCCT
CTCTATTCCCCCCCCTTCCGTGTTCACGTACAGCGGATGGAGCCGACCGA
GAACAGGATGAAGGCGGCATTGACCAGGATCAAGAGGTGAGAGAGGGAGG
CATGGGGGAGAAAGGGAGAGAGGGAGGGCAGAGAGAGCAGGAAGGAGGGA
AGGGAGGGTGTGGAAGACGTCGGTGTTTTGAAAGAGGGGCGGCAACGGAG
TGTGTCTGCCTTTGAGCACATGCGAGTCGCTTTTGGAGAGAAGATCGCGT
CTTCTCCTGCAATTCAGGAAAAGTCCCGAATTTGAAGTCTCCTTTTTATC
ACCCCTCACTCCCTCCCTCCCTTCCTCCCTCCCCCCCTCCCTCCTTTCCC
TTTTCTCCGTACGACTACAGCCGCGTCGACAGCGCCAACAAGCAGGCCAT
GGCCCGTCTCCGCGGATCGGGGGAGGACCCCGCCCTCCTCACCCCTATGA
GCATGGAAGACCTCGCAGGTAAAGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAATGGGGGAAATGGAGGAGAGGTGTGGGGTCAGTTGATG
GAGGGCAATTCGGCAGTCCCCTCATTCTCGGGGTCTCAGTAGATTGATAC
CTGCGTGTTTTGTTGATGGTACATTGGAATTTGCCCCTCTCAGGCAAGGG
GAGCGTGTACGGGCCTTTCTATCTCGGGCTTTCAGCGGTCTTCCTCTCTT
TTTTTTTCTCTCTCTCTCACACGCATACATCAACACATCCACACATCCAC
ACACTCATCAGGAGGGGACAAGGCCGTGAGCGCTCCCCGAATCCAGGGAG
AGATCATCCTCAAAAACTACCAGGTACGCCCTCCCTCTCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTACCTCAAC
GTTACATTTCATCACTCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCAGAATGTGGAGTACTTTGGCGAAATTCAGATCGGGTCACA
AAATCAAACTTTTTCGGTACGTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCGTCTCTTTCCTTGCCGATGTCCGA
TCGTCCCTCCTTCCTTGCCTCCCTCCCCCCCCCTCCGTCGTAGGTCATCT
TCGACACGGGAAGCAGCAACACATGGGTACCGTCCATGAAGTGCGCCTTG
TCATGCACGGGCAAGAGCCTCTTTCGGGCCGCCGACAGCTCCACCTTCAG
GGAGGTCGGCGACGAGTTCAAGGTAGCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCGTCGCCACCCTGTCCA
GCTCCTCGAGTCCTCGAAATGACTTTCCCGCCTCCCGTCGAAAACTTTTT
TTCTGATGGCGCTCCCCTCCCTTCCCTCCCTCCCTGCCTCCCTCGCCCCT
TAGGTCCGTTACGGCTCGGGTACTGTCAAAGGCTTCTTCTCCGAGGACTC
CATGACCGTTGCGGGCTTTCGCATCGAGAAGCAAATATTCGCCGAAGTCA
CAGACGCCAGTGGCCTAGGGCGGTACGCAAGCACTTCCTCCTTCCCTCTC
CCCCTCCCTCCCTTGATCTTTTTTCTTTCCTCCAATTTTCTCTTTCTCTC
CTTCCATTGTGTCCGCTCCGTCGAGCTTGACTAGGAAGACATCCTTACCT
ACCCCCCATCCACCTCCCCACTCCCCACCTCCCTTCACGACCGCCCTCAT
CCTTCCCTCCCTCCCTCCCGCCCTCCCGCCCTCCCTCAGCACCTACCAGA
TGGGCCAATTCGACGGTATCCTGGGCATGGGATTCGAGTCTCTGGCCGTC
GGGGGCGTCAAGACCCCGATGTTCAATCTCCTTGATCAGGTACGTCCTCC
CTCCCCCCCGCCCTCGCCACCGTGCTCGCCTTGCCCTCCCTCCTTCTGTC
TCCGTCCCCCCTCGCCAATTTCTTTGTTGTTGCATAGAAGAGACGAGTGC
CCATTTCACCTCCCCTTCCCTCCCTCCCTCAGGGCCTGATCGAGGAGGGT
GTCTTCGCCTTCTTCCTAGGCGCCGACGAGCCGGGGGAGCTGACGGTGGG
GGGGGTCAATCACGATCGGTATGAGGGTGAGCTCGCCTACACGCCTCTCA
AGAACGCTTCCTATTGGGCAGTCGCCCTGGTACGTCTGCCCGACCTCCTT
GCCTTCCTCCCTCGATCCCAGCCTTCTCTCTTGCATGCTCATCCTCTTTC
TCTTCTTTTCCTGCTGTCGCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCTCACCAGGGCACGGTGGTATCCTTGAACGGGGCGGGCCACCGCCAGGA
GTACCATAAGGCCACCACCGCCATCATTGACTCAGGTACATTTTCTTTCC
CTCCCTCCCTCCCTCCCTTCCCCCCTTCCGCTCGTGTGCTCATCCATTCC
TTCATCATGACTTTCGTTCGTCCATTCCTCCCTCCTTCCCTCCCTTTCTT
CCCCCGTGCCCTCCCTTCTCCCAGGCACTTCCCTTCTGGTCGGTCCCGAG
GAGGAGGTCAAGGGAATCGCAAGGGTAGGAGAGCGGAAGCGAGGGAGGGA
GGGAGGGAGGGAGGGAAGGAGGGAGGGGAAGGGGGGCACCATCACGCGTC
CTATTCCACCTAGACCTAACGTACACCTTCCTCCCTCCCTCCCTCCCTCC
CTCCCTCAATTAGTCCATGGGCGCGGTGTTCAACCATTGGGAAGACGTGT
GGGTGCTTGACGACTGCCTGCACAGGGACATTCCTTCGCTCACCTTCAAC
ATCGGAGGTCGGGAGGGAGGGAGGGGATGGGAAGAGGGATAGACGGAGGG
ACAAGGGAGGTTCTCCACTCACACGACTTTCTTCCCTCCCTCCCTCCCTC
CCTCCCTCCCCCCTGCCTCAGGCAAAGAGTACCTGATTGAGAAGGAGGAC
TACATTTTCTACGACCCGAGCTCGAATCAGTGCGTGCTGGGCATGATCAC
CTTCCCCTACCCCATCTGGATCCTCGGCGACGTGTTCATGCGGCGGTACT
ACTCCGTCTTCGACTACGAGAATGAGGTAGACCCTTCCCTCCCTCCCTCC
CTCCCGTCCTCTTTTCCCTTTGCCGCCTCCCTTTGTGTGTAGGGTTAGAG
TGTCTGTCAGTAGCGCATCTCTCCTCGCCCCCGTCCTCCCTCCCTCCCTG
CCTGCTTCCCTCAGCGCCTCACCCACACACACTCATTGACCCCTTCCTCC
CTCCCTTCCTCCCTCCCTTCCTCCCTCCCTCCTTTAGCGCCTCGGCCTCG
CCCCTGCCAGAGCAACGGGTTCGGCTCCTAACGCGACGGACGCTCGCGCA
GGCAAGCCCCCCGTGCCGAATGCCATGCCAGGGTAAGGAGGGAGGGGGGA
GGGCGGGGGGACAGGAATTGATTGGGAGTGAAAGAAGAGGAAAGCGGGAA
GGAGGGAATGAGGGGGAGATTCACTGTCAAGCTTCAACCTTGTCGCTATA
AACTTACACAACGTACCTTCCCCCCTTTGCGCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCTTCCTTTCACATTTCTTTCTCTCCTTCACTTACAG
CGGCGCGGGCGGCGACGGCGTCGCCGTTCCTTCGATGGAGAATGCAGATG
GCAAGAATTAA

Coding sequence (CDS) from alignment at chr22:688595..692705+

>NO22G02190.1 ID=NO22G02190.1|Name=NO22G02190.1|organism=Nannochloropsis oceanica|type=CDS|length=1365bp|location=Sequence derived from alignment at chr22:688595..692705+ (Nannochloropsis oceanica)
ATGAAGAGGGGACTCGTCCTCCTTGCGCTCTATGCGGGTTGCGCGGCCGC
TGTCGTCCAAATTCCTTTAAAGCGGATGGAGCCGACCGAGAACAGGATGA
AGGCGGCATTGACCAGGATCAAGAGCCGCGTCGACAGCGCCAACAAGCAG
GCCATGGCCCGTCTCCGCGGATCGGGGGAGGACCCCGCCCTCCTCACCCC
TATGAGCATGGAAGACCTCGCAGGAGGGGACAAGGCCGTGAGCGCTCCCC
GAATCCAGGGAGAGATCATCCTCAAAAACTACCAGAATGTGGAGTACTTT
GGCGAAATTCAGATCGGGTCACAAAATCAAACTTTTTCGGTCATCTTCGA
CACGGGAAGCAGCAACACATGGGTACCGTCCATGAAGTGCGCCTTGTCAT
GCACGGGCAAGAGCCTCTTTCGGGCCGCCGACAGCTCCACCTTCAGGGAG
GTCGGCGACGAGTTCAAGGTCCGTTACGGCTCGGGTACTGTCAAAGGCTT
CTTCTCCGAGGACTCCATGACCGTTGCGGGCTTTCGCATCGAGAAGCAAA
TATTCGCCGAAGTCACAGACGCCAGTGGCCTAGGGCGCACCTACCAGATG
GGCCAATTCGACGGTATCCTGGGCATGGGATTCGAGTCTCTGGCCGTCGG
GGGCGTCAAGACCCCGATGTTCAATCTCCTTGATCAGGGCCTGATCGAGG
AGGGTGTCTTCGCCTTCTTCCTAGGCGCCGACGAGCCGGGGGAGCTGACG
GTGGGGGGGGTCAATCACGATCGGTATGAGGGTGAGCTCGCCTACACGCC
TCTCAAGAACGCTTCCTATTGGGCAGTCGCCCTGGGCACGGTGGTATCCT
TGAACGGGGCGGGCCACCGCCAGGAGTACCATAAGGCCACCACCGCCATC
ATTGACTCAGGCACTTCCCTTCTGGTCGGTCCCGAGGAGGAGGTCAAGGG
AATCGCAAGGTCCATGGGCGCGGTGTTCAACCATTGGGAAGACGTGTGGG
TGCTTGACGACTGCCTGCACAGGGACATTCCTTCGCTCACCTTCAACATC
GGAGGCAAAGAGTACCTGATTGAGAAGGAGGACTACATTTTCTACGACCC
GAGCTCGAATCAGTGCGTGCTGGGCATGATCACCTTCCCCTACCCCATCT
GGATCCTCGGCGACGTGTTCATGCGGCGGTACTACTCCGTCTTCGACTAC
GAGAATGAGCGCCTCGGCCTCGCCCCTGCCAGAGCAACGGGTTCGGCTCC
TAACGCGACGGACGCTCGCGCAGGCAAGCCCCCCGTGCCGAATGCCATGC
CAGGCGGCGCGGGCGGCGACGGCGTCGCCGTTCCTTCGATGGAGAATGCA
GATGGCAAGAATTAA

Synonyms

Publications