NO22G02170.1, NO22G02170.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO22G02170.1
Unique Name	NO22G02170.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3180
Alignment location	chr22:675658..681899 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr22	genome	chr22:675658..681899 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO22G02170.1 vs.
Match: ORY51621.1 (cysteine proteinase [Rhizoclosmatium globosum])

HSP 1 Score: 345.5 bits (885), Expect = 5.800e-91
Identity = 252/754 (33.42%), Postives = 365/754 (48.41%), Query Frame = 0

Query:  293 VYTDDDFPADLSCITGNPKDKGKRGGKLPDGGQQQHEEGVEGEEAPL-PKCRCPDQKDAKLLKVLKDGPNQGRMFYGCAVGGKDKRGCGFFQWAGDTPT-----RWKEGPIEFMRFAVDGEWAVVNNKGFRSEDVKQGGLGSCWFLSALAVVAERHDLIARNMITRAGPAAGGMFGVRLFIDGRWKVYPIDGYLPLRPPPRSHRSDAADHLLLHASGRVMELKYCKGRNRQLWPSLLEKAYSKAHGSYRAISGGHIAEGMFDLTSFPCEMIQFGAGTFDSEQFWARLCSFQSSGFTMGASCGQSHEGLVGNHAYSVLCVKE--LQD-VPVGQQKKISDFFS---QRSQIASLEGGGGGGGGGGATASPTRSLPPYLTPDGVLRLIRLRNPWGCQEWKGSFGPGSDEWTPALREALEGKHSKSSKGDGCFWMAYHDFLRVFSGVDVCKAHRGWFVNSLQGYLHRQQWHPQHAVHLRLPSHSSVWLHLSLIQPSTRGKAGRGGFWHSDISLLVLRLAEEGGEGGKEQRWRVLGTEHVRLSGQGKVHHTELVLGEASSSTPSHYLLLPFSLNRWALLSDPAI------RGSRAALRKKALETAPFTLRVFSAAPVELREAPFPTHKHTHSPSALVVDQLLRALSDRALLRDSKFFAPPVVTRDVGGLAGVTLFQYECSGASLVVLENG----------LVE-------------QELYVRCRFVLHTSDSSDWGSTHNPTQEPEWRVVGPGFKSIVG 1006
            ++TD+ F AD S I               DG +           +P+ PKC C   K A+L  V K+  N GR F+ CA      +GC FF WA +T         +   IE+ R +++       +  +    ++QG +G CWF+SAL+V+AE   L+ R + ++ GP  G  F  R FIDG+W+ Y +D Y PL PP +  +S  A H   H       L + K  N+ +W  +LEKAY+KAH SY+AISGG IAE +FDLT FP E I FG   FDSE FW RL SFQS GF MGA C QS +GLVG HAYS+L V E  ++D + +G+ K + D+F    +R    + E G                    +T  G LRLI+LRNPWG  EWKG FG  S EW+ +LR+ L     K  +G G FW++YHDFL  FS VDVC  H    + +++  L         ++ + L       +++SL Q + RGK     F+++D++LL+L L++            ++  + +R+ GQG+ +H +L LGE        YLL+PFS+ R   + +  +      R      ++  L+   FT+R+ SA  V    A F   K     +  V D + R + D  L+  S       + + +      T F Y     + V    G          LVE             ++L++R R  L  +       T+N TQ+  WRVV P  + I+G
Sbjct:  127 LWTDEKFVADASAI---------------DGFRVAESSPSTATVSPVNPKCGC--NKAARLKTVYKENKNHGRKFFACAA--PQAKGCSFFMWAPETGQFALRHSKEHTSIEWKRLSLN--LLASPSDEYSPNHIRQGRVGDCWFVSALSVIAENPALLHRVLPSQPGPKHG-YFLARFFIDGKWQEYCVDNYFPLMPPEQVKKSTVASHPGPH-------LYFAKAVNKNIWVPVLEKAYAKAHSSYQAISGGQIAEALFDLTGFPTESIPFGGIGFDSELFWTRLLSFQSQGFLMGAVCPQSGDGLVGGHAYSLLQVVEESIEDGLVIGKTKNLHDYFDAGVKRKWDDTQEFG--------------------VTDHGTLRLIKLRNPWGKVEWKGKFGVDSAEWSSSLRKRL-NHDQKEDEGGGVFWISYHDFLTRFSQVDVCFTHLTHQLLNIECTLPPGLSIATSSI-IELSVPDPTLIYISLCQRTKRGKPAE-DFYYTDLNLLLLTLSD-------NDPTEIVSIQDLRMFGQGRDNHFDLFLGERGRVV--RYLLVPFSVERETAIQEAKVFKKGMNRVGSGESKQLTLKGLEFTVRIMSANCV---GASF--RKWKGGNTDFVWDAVERGICDTTLVGRSGLNGSLNLVKQMN---LPTPFYYTAPRDTWVSQYQGVWTSHNFTLRLVESRGLALAHFTNTHEKLWIRIRVELRAAT-----KTYNSTQQSVWRVVPPKTRRIIG 806

The following BLAST results are available for this feature:

BLAST of NO22G02170.1 vs.

BLAST of NO22G02170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
ORY51621.1	5.800e-91	33.42	cysteine proteinase [Rhizoclosmatium globosum]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO22G02170	NO22G02170	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO22G02170.1	NO22G02170.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO22G02170.1.cds1	NO22G02170.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02170.1.cds2	NO22G02170.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02170.1.cds3	NO22G02170.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02170.1.cds4	NO22G02170.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02170.1.cds5	NO22G02170.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02170.1.cds6	NO22G02170.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02170.1.cds7	NO22G02170.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02170.1.cds8	NO22G02170.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02170.1.cds9	NO22G02170.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02170.1.cds10	NO22G02170.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02170.1.cds11	NO22G02170.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02170.1.cds12	NO22G02170.1.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02170.1.cds13	NO22G02170.1.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02170.1.cds14	NO22G02170.1.cds14	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02170.1.cds15	NO22G02170.1.cds15	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02170.1.cds16	NO22G02170.1.cds16	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02170.1.cds17	NO22G02170.1.cds17	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02170.1.cds18	NO22G02170.1.cds18	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02170.1.cds19	NO22G02170.1.cds19	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02170.1.cds20	NO22G02170.1.cds20	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02170.1.cds21	NO22G02170.1.cds21	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02170.1.cds22	NO22G02170.1.cds22	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr22:675658..681899+
coding sequence from alignment at chr22:675658..681899+

mRNA sequence

>NO22G02170.1 ID=NO22G02170.1|Name=NO22G02170.1|organism=Nannochloropsis oceanica|type=mRNA|length=3180bp
ATGGTGCTGCCGATACGGCCATCGCACGTGGACGAGGCTGTCTGGTCATC
GTTACCTGTTGAGATCCGATTGGAGTTGGCCACTGCGTCTACAGGAGGCG
GGGGCGGAGCCGGAGGCGGTGGGAGAGCAGGAGGAAAAATGGCCGGCAAG
AATGACTTGATTGATTTGGTGGACGATGAGGAGGAGGAAGAGGAGGGGGA
GCATATGCCGCCACAAGGGCAGCAGCACGAGCAACTGGAGGCGCAGGGAA
AGGAGAGCAGCAATAGCAAGCGACCGCGATCGCAGCCTCCTCCACCATCA
CAACCCTCCACGGCAGCTGTAGCACCAGCAGGAGCAGCAAGAGCAGCTGT
ACCATCAGCACCACCATCGATAGCACCACCAAGAACGGAAAAGAAATGCA
CGGCTAGGGATGACGATGAGATCATCATCCTTTCATCTAAAGTGACAGCC
GCAAGAAGGTCGAGAGAGGAAGCGGATGAGGAAGACGACGTCCGCATCCT
CCCTTTAACCCCGGGTCTTTCTCTCCCTCCTTCCACCACGTATGCGTCAG
CCGCTGCTTGTGTAAGATATAATAGCTGGAGTGGCAGTGGGGGCGGGCAG
CCTGTGACGAAGAAGCTGAAGAAGAAGTTACGGCAAGGGGCCGTGTATGT
CTACCTAGGAGGAGAAGGCGAAGGAGCAGGTGAAAAGGAAGGATGGGGAA
GAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGCGGAGGAAGGGAAAGAGAT
GGAAGCGATGGAAGGTGTGGGAAAGTGGGAGGGTGGAAGGTGAGTATGAC
GCAAGAGGAAGAGGCGGAGGAATCGCTGCAGGAGTGGGCACGCGTGGTTG
ATTGGCAAGAGGGGCGCACCGGAGCTGTCTACACCGACGATGATTTCCCC
GCGGACCTGAGTTGCATTACGGGTAATCCGAAGGACAAGGGCAAGAGAGG
CGGCAAACTCCCGGATGGAGGGCAGCAGCAGCATGAGGAGGGGGTGGAAG
GGGAAGAAGCCCCTCTCCCCAAGTGCCGTTGCCCCGATCAGAAAGATGCA
AAGCTTCTTAAGGTCCTTAAGGACGGACCAAACCAAGGGCGTATGTTCTA
CGGCTGTGCCGTGGGAGGGAAAGATAAGCGCGGCTGTGGCTTCTTCCAAT
GGGCGGGCGACACACCCACGCGCTGGAAAGAGGGTCCTATTGAGTTTATG
CGCTTTGCGGTGGATGGGGAGTGGGCCGTCGTTAATAACAAGGGTTTCCG
CTCGGAGGATGTGAAACAAGGGGGGCTGGGCTCGTGCTGGTTTCTCTCGG
CTCTGGCAGTGGTGGCGGAACGACACGACCTGATAGCCCGCAATATGATC
ACTCGCGCTGGCCCTGCGGCTGGAGGAATGTTCGGAGTCCGTCTCTTCAT
CGATGGCCGCTGGAAGGTCTACCCTATCGACGGCTATCTCCCCCTCCGCC
CCCCCCCCCGCTCTCATCGATCCGACGCCGCCGACCACCTCCTCCTTCAC
GCCTCGGGACGGGTCATGGAGCTTAAGTACTGCAAAGGACGCAACCGGCA
GCTGTGGCCCTCCCTCCTCGAAAAAGCTTATTCCAAGGCCCACGGCTCCT
ACAGGGCTATCTCAGGCGGACATATCGCAGAGGGTATGTTCGATCTCACT
TCTTTTCCTTGCGAGATGATCCAATTCGGCGCCGGAACATTTGACAGCGA
GCAATTCTGGGCCCGCCTCTGCTCCTTTCAGAGCTCGGGGTTCACCATGG
GCGCCTCATGCGGACAGTCGCATGAGGGGCTGGTCGGTAATCATGCCTAT
AGCGTTTTGTGTGTCAAGGAGCTACAGGACGTTCCCGTGGGACAGCAGAA
GAAGATCAGTGACTTCTTCTCCCAGCGGTCGCAGATAGCGTCATTGGAAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCCACTGCCTCTCCGACGAGG
TCCCTCCCCCCCTACCTCACCCCAGACGGCGTGCTCCGTCTGATCCGTCT
CCGAAACCCGTGGGGCTGCCAAGAATGGAAAGGGAGCTTCGGCCCTGGGT
CAGATGAATGGACTCCGGCTCTGCGGGAGGCCCTGGAGGGGAAGCACTCC
AAGAGCAGCAAGGGCGACGGGTGCTTCTGGATGGCGTACCACGACTTCCT
CCGCGTCTTCTCGGGCGTGGACGTGTGTAAGGCTCATCGTGGCTGGTTCG
TCAACAGCCTTCAGGGCTACCTACACAGGCAGCAATGGCACCCACAGCAC
GCCGTCCACCTCCGCCTTCCCTCCCACTCATCCGTCTGGCTGCACCTCTC
CCTTATCCAGCCCTCCACGCGGGGCAAGGCCGGCAGGGGCGGGTTCTGGC
ACTCAGACATCTCCCTCCTCGTCCTCCGCTTGGCAGAGGAGGGGGGGGAG
GGAGGGAAGGAGCAGCGGTGGCGAGTCTTAGGCACGGAGCACGTCCGCCT
GTCCGGACAGGGCAAAGTGCACCACACCGAGCTCGTGCTGGGGGAGGCGT
CTTCCTCCACCCCCTCCCACTACCTCCTCCTCCCCTTCTCTCTCAACCGT
TGGGCCCTGCTCTCCGACCCTGCCATCCGGGGCAGCCGAGCTGCCCTCAG
GAAGAAGGCACTGGAGACCGCTCCCTTCACCCTCCGAGTCTTTTCCGCAG
CACCCGTGGAGTTGCGGGAGGCTCCCTTCCCCACCCACAAACACACACAC
TCGCCGAGTGCCCTTGTCGTCGATCAGCTCCTGCGCGCCCTGTCTGACAG
AGCCCTCCTCCGAGACTCCAAGTTCTTTGCCCCTCCTGTGGTTACGAGGG
ACGTTGGAGGGCTGGCTGGTGTGACCCTCTTCCAGTACGAGTGCTCTGGC
GCCTCCCTCGTTGTCCTCGAGAATGGCTTGGTCGAACAAGAGCTCTACGT
GCGGTGCCGTTTCGTCCTGCACACCAGCGACAGCAGCGACTGGGGGTCGA
CTCACAACCCCACGCAGGAACCTGAATGGCGCGTGGTCGGTCCAGGCTTC
AAGAGCATCGTGGGTGTGCTGGGGTCCTCCTCCCAAATGGCGCAATTTGA
GCTGGAGGCCATGGGAGAGGGAGGGACGATTGTGATGGATCGCGTGCAGG
TGCAGGCGTTGCCACATGAAGAGATTAGACCACAAGAGCTGGATGGGGCC
CGAGGGATTTTCGCTTGGAAGAAGGCATGA

protein sequence of NO22G02170.1

>NO22G02170.1-protein ID=NO22G02170.1-protein|Name=NO22G02170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1060bp
MVLPIRPSHVDEAVWSSLPVEIRLELATASTGGGGGAGGGGRAGGKMAGK
NDLIDLVDDEEEEEEGEHMPPQGQQHEQLEAQGKESSNSKRPRSQPPPPS
QPSTAAVAPAGAARAAVPSAPPSIAPPRTEKKCTARDDDEIIILSSKVTA
ARRSREEADEEDDVRILPLTPGLSLPPSTTYASAAACVRYNSWSGSGGGQ
PVTKKLKKKLRQGAVYVYLGGEGEGAGEKEGWGRGGGGGGGEGGGGRERD
GSDGRCGKVGGWKVSMTQEEEAEESLQEWARVVDWQEGRTGAVYTDDDFP
ADLSCITGNPKDKGKRGGKLPDGGQQQHEEGVEGEEAPLPKCRCPDQKDA
KLLKVLKDGPNQGRMFYGCAVGGKDKRGCGFFQWAGDTPTRWKEGPIEFM
RFAVDGEWAVVNNKGFRSEDVKQGGLGSCWFLSALAVVAERHDLIARNMI
TRAGPAAGGMFGVRLFIDGRWKVYPIDGYLPLRPPPRSHRSDAADHLLLH
ASGRVMELKYCKGRNRQLWPSLLEKAYSKAHGSYRAISGGHIAEGMFDLT
SFPCEMIQFGAGTFDSEQFWARLCSFQSSGFTMGASCGQSHEGLVGNHAY
SVLCVKELQDVPVGQQKKISDFFSQRSQIASLEGGGGGGGGGGATASPTR
SLPPYLTPDGVLRLIRLRNPWGCQEWKGSFGPGSDEWTPALREALEGKHS
KSSKGDGCFWMAYHDFLRVFSGVDVCKAHRGWFVNSLQGYLHRQQWHPQH
AVHLRLPSHSSVWLHLSLIQPSTRGKAGRGGFWHSDISLLVLRLAEEGGE
GGKEQRWRVLGTEHVRLSGQGKVHHTELVLGEASSSTPSHYLLLPFSLNR
WALLSDPAIRGSRAALRKKALETAPFTLRVFSAAPVELREAPFPTHKHTH
SPSALVVDQLLRALSDRALLRDSKFFAPPVVTRDVGGLAGVTLFQYECSG
ASLVVLENGLVEQELYVRCRFVLHTSDSSDWGSTHNPTQEPEWRVVGPGF
KSIVGVLGSSSQMAQFELEAMGEGGTIVMDRVQVQALPHEEIRPQELDGA
RGIFAWKKA*

mRNA from alignment at chr22:675658..681899+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO22G02170.1 ID=NO22G02170.1|Name=NO22G02170.1|organism=Nannochloropsis oceanica|type=mRNA|length=6242bp|location=Sequence derived from alignment at chr22:675658..681899+ (Nannochloropsis oceanica)
ATGGTGCTGCCGATACGGCCATCGCACGTGGACGAGGCTGTCTGGTCATC
GTTACCTGTTGAGATCCGATTGGAGTTGGCCACTGCGTCTACAGGAGGCG
GGGGCGGAGCCGGAGGCGGTGGGAGAGCAGGAGGAAAAATGGCCGGCAAG
AATGACTTGATTGATTTGGTGGACGATGAGGAGGAGGAAGAGGAGGGGGA
GCATATGCCGCCACAAGGGCAGCAGCACGAGCAACTGGAGGCGCAGGGAA
AGGAGAGCAGCAATAGCAAGCGACCGCGATCGCAGCCTCCTCCACCATCA
CAACCCTCCACGGCAGCTGTAGCACCAGCAGGAGCAGCAAGAGCAGCTGT
ACCATCAGCACCACCATCGATAGCACCACCAAGAACGGAAAAGAAATGCA
CGGCTAGGGATGACGATGAGATCATCATCCTTTCATCTAAAGTGACAGCC
GCAAGAAGGTCGAGAGAGGAAGCGGATGAGGAAGACGACGTCCGCATCCT
CCCTTTAACCCCGGGTCTTTCTCTCCCTCCTTCCACCACGTATGCGTCAG
CCGCTGCTTGTGTAAGATATAATAGCTGGAGTGGCAGTGGGGGCGGGCAG
CCTGTGACGAAGAAGCTGAAGAAGAAGTTACGGCAAGGGGCCGTGTATGT
CTACCTAGGAGGAGAAGGCGAAGGAGCAGGTGAAAAGGAAGGATGGGGAA
GAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGCGGAGGAAGGGAAAGAGAT
GGAAGCGATGGAAGGTGTGGGAAAGTGGGAGGGTGGAAGGTGAGTATGAC
GCAAGAGGAAGAGGCGGAGGAATCGCTGCAGGAGTGGGCACGCGTGGTAA
GAAGGAAGGAAGGGAGAAAGGGAGGAAGGGAGGGAAGGAGGGAGGGGTAG
AAGAAGGTTGGAGACGAGGACTACCCGTCTAAATATTTTGCATCCCTCGC
TCTCGATCCCCCTCTTTTCCCAGGTTGATTGGCAAGAGGGGCGCACCGGA
GCTGTCTACACCGACGATGATTTCCCCGCGGACCTGAGTTGCATTACGGG
TAATCCGAAGGACAAGGGCAAGAGAGGCGGCAAACTCCCGGATGGAGGGC
AGCAGCAGCATGAGGAGGGGGTGGAAGGGGAAGAAGGTAGGGAGGAGAGG
TAGGGGAGGTGGTTGGGCCTTGCTTTTTTCAGTGCATGACGCGGTACTTG
CCTTCGGCATCCCTCCTTCCCGCTCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCAGCCCCTCTCCCCAAGTGCCGTTGCCCCGATCAGAAAGATGCAAA
GCTTCTTAAGGTCCTTAAGGTACGCTCCCCATCCCTCCTTCCCTCCCTCT
CTCCATCCATTCATCGTTCCCTTCCTCCCTCCCTCCCTCCCTCTACAGGA
CGGACCAAACCAAGGGCGTATGTTCTACGGCTGTGCCGTGGGAGGGAAAG
ATAAGGTACCTTCCTCCCTCCCTCCCTCCCTTCCTTCCTTCCTTCCTCTC
TCCCGCCCTCCTTTCTCTCCAGTGACCCACGCGCCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCCCCCAAGCGCG
GCTGTGGCTTCTTCCAATGGGCGGGCGACACACCCACGCGCTGGAAAGAG
GGTCCTATTGAGTTTATGCGCTTTGCGGTGGATGGGGAGTGGGCCGTCGT
TAATAACAAGGGTTTCCGCTCGGAGGATGTGGTGCGTACTACGTCCTCCT
CCCTCCCTCCTTCCCTCCCTCCCTCCCCTCCTCCTGTCCCCTTCCATCCC
CTTTCCACACGTCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCGTCTAGAAACAAGGGGGGCTGGGCTCGTGCTGGTTTCTCTCGGC
TCTGGCAGTGGTGGCGGAACGACACGACCTGATAGGTATGCCACGGAGGG
AGGGAGGGGGGGAGGGGGGGAAGGTAGGAGGAAGGGAAGACAGTGACGCG
GGTTTTCTGGTCGATGAAGATGCAGCCTTTTTACATGTTTATCACCTCTC
CCCTCTCCCGCCCGCCCGCCCCCCTCCCTCCCTCTCACCCACCCTCTCTC
AGCCCGCAATATGATCACTCGCGCTGGCCCTGCGGCTGGAGGAATGTTCG
GAGTCCGTCTCTTCATCGATGGCCGCTGGAAGGTACCTATGCCCCCTCCC
TCCCTCCTTCCCTCCCTCTCCACTTCCCTCTCTCCCTCTTCTCGGGGAAA
AATCCATAAATCCCACCCACACCCCTCCCTCCCCCCCTCCCTCCCCCCTT
CCCAGGTCTACCCTATCGACGGCTATCTCCCCCTCCGCCCCCCCCCCCGC
TCTCATCGATCCGACGCCGCCGACCACCTCCTCCTTCACGCCTCGGGACG
GGTCATGGAGCTTAAGTACTGCAAAGGTACCCTCCCTCCCTGCCTCCCTT
CCTCCCTCCCTCTCTCCCTCTCTCCCTTCCTCAGTGTTTGCCGCCCCTAC
CCATCCACAGGACGCAACCGGCAGCTGTGGCCCTCCCTCCTCGAAAAAGC
TTATTCCAAGGTATTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCTCCCTTCAGCACCACCCCATCCATCTGTCGTGATAGGACTTC
ATTCTTGCACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCA
CCAGGCCCACGGCTCCTACAGGGCTATCTCAGGCGGACATATCGCAGAGG
GTATGTTCGATCTCACTTCTTTTCCTTGCGGTAAGCAGGGAGGGAGGGAG
GGAAGGAGGGGGGGAGGAAGGGAGGGAAGGAGGGAAGAAGGTATCGACAC
GTGGAAAGGACGATCACTTACACCACCCTCCTTCCCTCCCTCTCTCCCTC
CCTCCCTCCCCCCCTCCCTCTTCAGAGATGATCCAATTCGGCGCCGGAAC
ATTTGACAGCGAGCAATTCTGGGCCCGCCTCTGCTCCTTTCAGGTAGGTA
GGTAGGGAGGGAGGGAGGGAGGGAGGTTGACTTTGTGTGGGTCCATCCCA
GCCCTGCCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCCCTTCGTTCAGAGCTCGGGGTTCACCATGGGCGCCTCA
TGCGGACAGTCGCATGAGGGGCTGGTCGGTAATCATGCCTATAGCGTTTT
GTGTGTCAAGGTAGGGGGAGAGGGAGGGAGAGAGGGAGGGAGAAAGGAAG
GAGGGAGGGAAGGAAAAAGGGAGAGAGGGAAGGAGGGTGGGAAGGAGGAT
ACCATCGCAGGGCTACTCGTCCACATGCATTATTCATACTCGCTTCCTGT
TCTTATTCATACTCGCTTCCTGCCCCCCTCCCTCCCTCCCTCCCTCCCTC
AGGAGCTACAGGACGTTCCCGTGGGACAGCAGAAGAAGATCAGTGACTTC
TTCTCCCAGCGGTCGCAGATAGCGTCATTGGAAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGTGAGTTCCTTTTAGGGTTTCACTTATTGGCTTGTC
TTACTCCCCTTGAAGCATTCTTGCCGGGCTCTCATGCCTTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCT
CCCTCCCTTCTCCAGCCACTGCCTCTCCGACGAGGTCCCTCCCCCCCTAC
CTCACCCCAGACGGCGTGCTCCGTCTGATCCGTCTCCGAAACCCGTGGGG
CTGCCAAGAATGGAAAGGGAGGTGGGGAAGGAGGGAAGGAGGGAGGGAGG
AAGGGAGGAAGAGGGAGTCAGGAAGGGATCAAATTAGATATGAAAATATT
TAATCTAAGAGACGTGACGGCTCACTTACAGCGGGCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGCTTCGGCCCTGG
GTCAGATGAATGGACTCCGGCTCTGCGGGAGGCCCTGGAGGGGAAGCACT
CCAAGAGCAGCAAGGGCGACGGGTGCTTCTGGATGGTATGTACCTCCCTC
CCTTCCTCCCTCCCTCCCTCCTCCCCATCTTTCCTTTCGCCCTTCGCAGC
GTTCCATGCAGTACACAAACCTCTTGCCTTTCTTCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGGCAGGCGTACCACGACTT
CCTCCGCGTCTTCTCGGGCGTGGACGTGTGTAAGGCTCATCGTGGCTGGT
TCGTCAACAGCCTTCAGGGCTACCTACACAGGCAGCAATGGCACCCACAG
CACGTACGCCCTCCCTCCCTTTCTCTATTTCGTTCTCTCTCTCTTCTTCC
TCAGTCTGCGGAAGTTCTCATTGCCATCCTTCCTCCCTCCCTTCCTCCCT
CCCTCCCTCCCTCCCTGCAGGCCGTCCACCTCCGCCTTCCCTCCCACTCA
TCCGTCTGGCTGCACCTCTCCCTTATCCAGCCCTCCACGCGGGGCAAGGC
CGGCAGGGGCGGGTTCTGGCACTCAGACATCTCCCTCCTCGTCCTCCGCT
TGGCAGAGGAGGGGGGGGAGGGAGGGAAGGAGCAGCGGTGGCGAGTCTTA
GGTAGATGGCTGGGAGGGAGGGAGGAAGGAAAGGAGGGAAGTTCAATCAA
GCAGCCATTTAAAAAGCAGAGGAACGTCGGCGATGAGAATGTGGGTGTAC
TGGTCTAACACCCCTCCCTTCCTCCCTCCCTCTCTCCCTCCCTCCCTCGC
AGGCACGGAGCACGTCCGCCTGTCCGGACAGGGCAAAGTGCACCACACCG
AGCTCGTGCTGGGGGAGGCGTCTTGTAACGAGGGAGGGAGGGAGGGAGGG
AGTAAGGGAGGGAGGGGTGGCTCATTCCTGTTTCTGCATGTCGTCAGCAC
GTGTCTCGCTCACACATACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCGCCCCTGCCTAGCCTCCACCCCCTCCCACTACCTCCTCCTCCCCTTC
TCTCTCAACCGTTGGGCCCTGCTCTCCGACCCTGCCATCCGGGGCAGCCG
AGCTGCCCTCAGGAAGAAGGCACTGGAGACCGCTCCCTTCACCCTCCGAG
TCTTTTCCGCAGCACCCGTGGAGTTGCGGGAGGTGAGGGATGGAGGGAGA
GAAGGAGGCGAGGAGGGACAGGGGGAAAGAAAGGTAGGAGAAGACTATGG
ACAATATTCCGGTCGTCTCACCCCCGTTCCCTCCTTCCCTCCCTCCCCCT
CGTCCTCCATCCGTCCCCTTCAGGCTCCCTTCCCCACCCACAAACACACA
CACTCGCCGAGTGCCCTTGTCGTCGATCAGCTCCTGCGCGCCCTGTCTGA
CAGAGCCCTCCTCCGAGACTCCAAGTTCTTTGCCCCTCCTGTGGTTACGA
GGGACGTTGGAGGGTGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGAAG
GGAGGGAGGAAGGGAAAGAGGGAGGGAGGTTGCGGCCAGGCAGACGTTTA
CCCTCTAGCCTAGCGCTTGCCTCCTCATGATCAGCGTTTGAGAGCCAGTG
AACGGAACGCCCTAGAGAAGAAATATAGACACACAGACGACTTGGACTGA
GAAACACTGGAACGATCCTTCACTCACGTCCCTCCTTCCTCCTCTCTGGA
CGCATCTGTGTACTCACCACAGGCTGGCTGGTGTGACCCTCTTCCAGTAC
GAGTGCTCTGGCGCCTCCCTCGTTGTCCTCGAGAATGGCTTGGTCGAACA
AGAGCTCTACGTGCGGTGCCGTTTCGTCCTGCACACCAGCGACAGCAGCG
ACTGGGGGTCGACTCACAACCCCACGCAGGAACCTGGTAGGGAGAAAGGA
AGTGAGCGAAGAAGGGAGGGAATAATGGAAGGAGATGGAACAGGAGTGAC
GATAAAAATGGGGTGGTCAGCTCCGCTGCGCTCTTGTAGCAAAATATCGA
GAGCCCTCCACGACCCCACCACCAACCAGTCCACTTCCATTCCCTCCCTC
CTTTCCTCCCTCCCTCTCCCACATCCCCTCCCTCAGAATGGCGCGTGGTC
GGTCCAGGCTTCAAGAGCATCGTGGGTGTGCTGGGGTCCTCCTCCCAAAT
GGCGCAATTTGAGCTGGAGGCCATGGGAGAGGGAGGGACGATTGTGATGG
ATCGCGTGCAGGTGCAGGCGTTGCCACATGAAGAGATTAGACCACAAGAG
CTGGATGGGGCCCGAGGGATTTTCGCTTGGAAGAAGGCATGA

Coding sequence (CDS) from alignment at chr22:675658..681899+

>NO22G02170.1 ID=NO22G02170.1|Name=NO22G02170.1|organism=Nannochloropsis oceanica|type=CDS|length=3180bp|location=Sequence derived from alignment at chr22:675658..681899+ (Nannochloropsis oceanica)
ATGGTGCTGCCGATACGGCCATCGCACGTGGACGAGGCTGTCTGGTCATC
GTTACCTGTTGAGATCCGATTGGAGTTGGCCACTGCGTCTACAGGAGGCG
GGGGCGGAGCCGGAGGCGGTGGGAGAGCAGGAGGAAAAATGGCCGGCAAG
AATGACTTGATTGATTTGGTGGACGATGAGGAGGAGGAAGAGGAGGGGGA
GCATATGCCGCCACAAGGGCAGCAGCACGAGCAACTGGAGGCGCAGGGAA
AGGAGAGCAGCAATAGCAAGCGACCGCGATCGCAGCCTCCTCCACCATCA
CAACCCTCCACGGCAGCTGTAGCACCAGCAGGAGCAGCAAGAGCAGCTGT
ACCATCAGCACCACCATCGATAGCACCACCAAGAACGGAAAAGAAATGCA
CGGCTAGGGATGACGATGAGATCATCATCCTTTCATCTAAAGTGACAGCC
GCAAGAAGGTCGAGAGAGGAAGCGGATGAGGAAGACGACGTCCGCATCCT
CCCTTTAACCCCGGGTCTTTCTCTCCCTCCTTCCACCACGTATGCGTCAG
CCGCTGCTTGTGTAAGATATAATAGCTGGAGTGGCAGTGGGGGCGGGCAG
CCTGTGACGAAGAAGCTGAAGAAGAAGTTACGGCAAGGGGCCGTGTATGT
CTACCTAGGAGGAGAAGGCGAAGGAGCAGGTGAAAAGGAAGGATGGGGAA
GAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGCGGAGGAAGGGAAAGAGAT
GGAAGCGATGGAAGGTGTGGGAAAGTGGGAGGGTGGAAGGTGAGTATGAC
GCAAGAGGAAGAGGCGGAGGAATCGCTGCAGGAGTGGGCACGCGTGGTTG
ATTGGCAAGAGGGGCGCACCGGAGCTGTCTACACCGACGATGATTTCCCC
GCGGACCTGAGTTGCATTACGGGTAATCCGAAGGACAAGGGCAAGAGAGG
CGGCAAACTCCCGGATGGAGGGCAGCAGCAGCATGAGGAGGGGGTGGAAG
GGGAAGAAGCCCCTCTCCCCAAGTGCCGTTGCCCCGATCAGAAAGATGCA
AAGCTTCTTAAGGTCCTTAAGGACGGACCAAACCAAGGGCGTATGTTCTA
CGGCTGTGCCGTGGGAGGGAAAGATAAGCGCGGCTGTGGCTTCTTCCAAT
GGGCGGGCGACACACCCACGCGCTGGAAAGAGGGTCCTATTGAGTTTATG
CGCTTTGCGGTGGATGGGGAGTGGGCCGTCGTTAATAACAAGGGTTTCCG
CTCGGAGGATGTGAAACAAGGGGGGCTGGGCTCGTGCTGGTTTCTCTCGG
CTCTGGCAGTGGTGGCGGAACGACACGACCTGATAGCCCGCAATATGATC
ACTCGCGCTGGCCCTGCGGCTGGAGGAATGTTCGGAGTCCGTCTCTTCAT
CGATGGCCGCTGGAAGGTCTACCCTATCGACGGCTATCTCCCCCTCCGCC
CCCCCCCCCGCTCTCATCGATCCGACGCCGCCGACCACCTCCTCCTTCAC
GCCTCGGGACGGGTCATGGAGCTTAAGTACTGCAAAGGACGCAACCGGCA
GCTGTGGCCCTCCCTCCTCGAAAAAGCTTATTCCAAGGCCCACGGCTCCT
ACAGGGCTATCTCAGGCGGACATATCGCAGAGGGTATGTTCGATCTCACT
TCTTTTCCTTGCGAGATGATCCAATTCGGCGCCGGAACATTTGACAGCGA
GCAATTCTGGGCCCGCCTCTGCTCCTTTCAGAGCTCGGGGTTCACCATGG
GCGCCTCATGCGGACAGTCGCATGAGGGGCTGGTCGGTAATCATGCCTAT
AGCGTTTTGTGTGTCAAGGAGCTACAGGACGTTCCCGTGGGACAGCAGAA
GAAGATCAGTGACTTCTTCTCCCAGCGGTCGCAGATAGCGTCATTGGAAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCCACTGCCTCTCCGACGAGG
TCCCTCCCCCCCTACCTCACCCCAGACGGCGTGCTCCGTCTGATCCGTCT
CCGAAACCCGTGGGGCTGCCAAGAATGGAAAGGGAGCTTCGGCCCTGGGT
CAGATGAATGGACTCCGGCTCTGCGGGAGGCCCTGGAGGGGAAGCACTCC
AAGAGCAGCAAGGGCGACGGGTGCTTCTGGATGGCGTACCACGACTTCCT
CCGCGTCTTCTCGGGCGTGGACGTGTGTAAGGCTCATCGTGGCTGGTTCG
TCAACAGCCTTCAGGGCTACCTACACAGGCAGCAATGGCACCCACAGCAC
GCCGTCCACCTCCGCCTTCCCTCCCACTCATCCGTCTGGCTGCACCTCTC
CCTTATCCAGCCCTCCACGCGGGGCAAGGCCGGCAGGGGCGGGTTCTGGC
ACTCAGACATCTCCCTCCTCGTCCTCCGCTTGGCAGAGGAGGGGGGGGAG
GGAGGGAAGGAGCAGCGGTGGCGAGTCTTAGGCACGGAGCACGTCCGCCT
GTCCGGACAGGGCAAAGTGCACCACACCGAGCTCGTGCTGGGGGAGGCGT
CTTCCTCCACCCCCTCCCACTACCTCCTCCTCCCCTTCTCTCTCAACCGT
TGGGCCCTGCTCTCCGACCCTGCCATCCGGGGCAGCCGAGCTGCCCTCAG
GAAGAAGGCACTGGAGACCGCTCCCTTCACCCTCCGAGTCTTTTCCGCAG
CACCCGTGGAGTTGCGGGAGGCTCCCTTCCCCACCCACAAACACACACAC
TCGCCGAGTGCCCTTGTCGTCGATCAGCTCCTGCGCGCCCTGTCTGACAG
AGCCCTCCTCCGAGACTCCAAGTTCTTTGCCCCTCCTGTGGTTACGAGGG
ACGTTGGAGGGCTGGCTGGTGTGACCCTCTTCCAGTACGAGTGCTCTGGC
GCCTCCCTCGTTGTCCTCGAGAATGGCTTGGTCGAACAAGAGCTCTACGT
GCGGTGCCGTTTCGTCCTGCACACCAGCGACAGCAGCGACTGGGGGTCGA
CTCACAACCCCACGCAGGAACCTGAATGGCGCGTGGTCGGTCCAGGCTTC
AAGAGCATCGTGGGTGTGCTGGGGTCCTCCTCCCAAATGGCGCAATTTGA
GCTGGAGGCCATGGGAGAGGGAGGGACGATTGTGATGGATCGCGTGCAGG
TGCAGGCGTTGCCACATGAAGAGATTAGACCACAAGAGCTGGATGGGGCC
CGAGGGATTTTCGCTTGGAAGAAGGCATGA

Synonyms

Publications