Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr22 genome chr22:667357..672012 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO22G02150.1 vs.
Match: CBN78792.1 (conserved unknown protein [Ectocarpus siliculosus])
HSP 1 Score: 83.6 bits (205), Expect = 2.800e-12
Identity = 53/150 (35.33%), Postives = 68/150 (45.33%), Query Frame = 0
Query: 366 RPLLASCVGASSQDREEEGAGNTLKPSVCIATLDRYRQQEGARHLFSSSPSSTPPTSSSLPSSGPSSPSLPLQQLGIRCQFYCGCCQGMPCYYSSRGSPSDQTDEYIRYT-PSTAVALVTSFALTPYQAFWHPQNPCYAPQRATLQFRWP 515
R LL+ VGASSQDR +EG +TL S C L+ R + R +S +G RCQ CGC CY+SS SP+ +E++ Y VA+ SF LTPY +FW P+ P Y P A Q P
Sbjct: 105 RQLLSFSVGASSQDRNDEGPSHTLFESRCARMLEDMRCGKMPREAVAS--------------------------IGKRCQSDCGCVWLDKCYWSSEPSPTADKEEWLDYDMQENTVAVAVSFMLTPYTSFWQPEQPTYNPIEACFQLMHP 228
The following BLAST results are available for this feature:
BLAST of NO22G02150.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 Expect = 2.80e-12 / Id = 35.33 Sequence CBN78792.1
Match Name E-value Identity Description
CBN78792.1 2.800e-12 35.33 conserved unknown protein [Ectocarpus siliculosus] [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO22G02150.1 ID=NO22G02150.1|Name=NO22G02150.1|organism=Nannochloropsis oceanica|type=mRNA|length=3517bp back to top protein sequence of NO22G02150.1
>NO22G02150.1-protein ID=NO22G02150.1-protein|Name=NO22G02150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=716bp back to top mRNA from alignment at chr22:667357..672012-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G02150.1 ID=NO22G02150.1|Name=NO22G02150.1|organism=Nannochloropsis oceanica|type=mRNA|length=4656bp|location=Sequence derived from alignment at chr22:667357..672012- (Nannochloropsis oceanica)ATGGCTCGCGTTGCATATGCCCCACATGGCCAAGGGGAGG
AGAGGCGGGAACAAGCTGCCGCTTCATCCTCCCCGGCCCCAATCTCCATT
CCGACGCTCCTCTCCGCCTCGTCCTCTTCGTCCTCCACCACGCCCTCCCT
CTCCTTTCTCGGCGGCTGGCGCCGCCTGTTTACTGCACCGACTTCCCCGC
GAAAAG GTAGGTATGGAGAGACGAATTGAGGGAGGGAGGAAAGAATCACC
GTTAGGGATGACGGGGTGTCACGCCTGTGTTCTGCTCGCCTAGCCATGGT
GGCTGTAAAGCGAGGGCTCACCCTTTCGTATGTTCATGGACTATAAATGC
ACAAAAGAGCATGAGTAGGCAATAGAAACACATCTCCCTCAATCTATATA
TCTATCTATGTATGGATGTTTTGTTTATTAAAATTGGGCATTGACCAGCG
CGAGACATCTTCCCTTGGTGATCTTGACGATCGTCCGTCATCCTCCTCTT
CCTCCTCCTTACCACCACCGCCACGCACCCTCTCTCCTTCCCTCCTTGCC
CCCCTCACCTTCTTCTCACCAACAGGAACTACCTCCCCCTCCCTCCTCTC
CCCGGTCGCCGCTGCCTGGATCAAAAGCAACAACAACCAAGATAAGACTA
CGCTCTTCTCCACCTCCACCACCACCACCACCTCATCCTCCTCCTCCTTC
TTCAACTCCTCTCCTCTCATCGAAACCGTTCATAACTCCGTCTCTTCCTC
TCTCTCCTCCCTCGCCATGGACGTGCAACACGAGCTTCAATCTTTCCTCG
CCCTGTCGGACTACCTCACTCTCGAACGCTCCTCCTCCCTCCTCCTCGAA
TCCTGCCGACCTCCCCCTTCCTCCCCTTTCCCCTCCCCTCTCTCCTCCTC
CTCCTACTTCCTCCACTCATGCTTGCAGATGTGGTATAGCAATGCCTCCC
ACCTCTCCCTCCCTCCCTCCCTCGCCCGCTCCCTTGTCCGACGCTTGGTG
GCCAGCGTGCCCCCCTCTCTGGAAGAGAGGAGGAAGAGGAGGGAGGAAGT
GAGGGAGAGAGGGAGGAAGAAGCGGAACAGCGCCTTAAACAACAACTACA
GCATCTATATGGACGACGACTTTGATAGTGGGAAGGAGGAGGGAGGGAAA
AGGGAGGGGGGAGGAAGAGGAGCAGGAGGAGGCGGCGGCGGCGACAACAC
CGATACAGAGAGCACGTGCAGTCATACGCCCCCCCCACCTCTCCTCCTCC
TCGCCCATCATTCTCCTTCCTCTTCCCCGTCCTCCTCCTCCCTCGGCTCC
TCCGCCTCCTCGTCCTCCTGCACCTCTTCGAGCTTTTGCCTCTCGGGCCG
CCGTCGTGTCAACCCGTACCTTCTCGACCAAGACGAGGATGAGGACGAGG
ACGAGACAGGGACGGAGGAGGAGGCGGCGGAGAAGGAGAGGATGAGTGCG
GGCATCCCCCACCCGGCGCGTGTCCGCCCCCTTCTGGCCTCGTGCGTCGG
AGCTTCCTCCCAGGACAGGGAGGAGGAAGGAGCGGGCAACACCCTCAAGC
CCTCCGTGTGCATCGCCACCCTCG GTAGGGAGGGAGGGATCAAGGAAAGG
AGCTGGCCATCGAGGCCATCTTCCTCGGTAATCCTACTCATCTTCCATCC
ATCCCTCCCTCTCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCCCTCCAGACCGGTACCGCCAGCAGGAAGGGGCGCGTCAC
CTCTTCTCCTCCTCCCCGTCCTCCACGCCCCCCACCTCTTCCTCCCTCCC
TTCCTCGGGCCCGTCCTCCCCCTCCCTCCCTCTCCAGCAGCTGGGGATTC
GCTGTCAGTTTTATTGCGGCTGCTGCCAAGGCATGCCGTGCTACTACTCC
AG GTACGCCCTCCCTCCCTCCCTTCCTCCCTTCCTCCCTCCCTCCTTCCC
TCCCATTCTCCCTCCCTTCCTGATACTCACCGTCCTCACCTTCCTTTCCT
CCCTGCGTTCCTTCCTCACAGCCGCGGCTCCCCCTCGGACCAAACGGACG
AGTACATCCGTTACACCCCCTCCACGGCCGTTGCGCTCGTAACGTCTTTC
GCTCTCACCCCCTATCAGGCCTTCTGGCACC GTAAGTCCCTCCCATCCTC
CCCGCCTCCCCCCCTCGCTCCCGCCCACTTTTCTCCGATTTTTTCCTTTT
TTCTCCGATTTTTCCCCTCATTCTTTCGTCCCAACAACTGCAACTCCGAC
TCATCTTTCCCTCCCTCCCTCCCCCTCCCTCCCTCCCTCCCCCTCCCTCC
CTCCCTCCCTCCCTCCTTCCCTCTCTCCATTCCAGCTCAAAACCCGTGCT
ACGCCCCTCAACGAGCCACGCTGCAGTTCCGCTGGCCCTGCCCTTCCTCT
CTCCATCCCTCCCTCCCATCCTCCCTGCTATCCTCGTCCCTTCCTTCCCC
AGCAGCGTCCTCCTCCTTCCTCCGCTCGAGGATGAACAACAGCCAGGAGG
AGGAGGAGGAGGAGGAGGGAGAAGGAGGGAAGGAGGGCGGGAAGGAGGGA
CCAGGGCAGGTGTATTGGGAGAGCGAGGCTTTTGCAGTGTCACGAGTCAT
GGTG GTGAGTGCTGAGGACTACCTTCAATCCCTCTCCTCCATTCCTCCCT
CCCTTCCTCCCTCCCGATATCATTTCATATCCTGGGCATCGTCAGTCTCA
CCCTCTCTCCCTCCCTCTTTCCTCCCCTCCTTCCCTCAGGAGCAACGATT
CACCCTTTCCCGGCCCGCCTTCTTTTTAGGAGGGGAGATAGTGCTGGTCC
TGGAGGGGAAGCAGCAGCGTCAGACTCTGA GTAAGCAGGGAGGGAGGCCT
GAAGGATGGAGGGAGGGTGGGAGGGAAGGAGGACTTAAGGACCGCCTGTA
AGTACCAAATATTCTCTTATACTCACCCCTCACTCCCTCCCTCTCTCTCT
CCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCTTCCCTCCCTCCAGGC
CCGGACGAGGAGGGTGCTGAAGAAGCCTACGATTTTTACTACGTCTGTCT
CTCACAGGTGGACGTGAGCGGCGTGCCTCTCCCAGGGCTGGTGTTTGTGA
GGGAGGGAGGAAAGAAGGGAGGGTGGGAAGGAGGGCGACTCGTGTCGGTT
GAAAAAGCGGAGGACGAGGGAGAGGGGGGAAAGGAGCAAGGGGAGGGCGG
ATGGAAGGGAGGGAGGAAGGGAGGGAGGAAGGGAGGGAAGAAGGGAGGGA
AGGAGGGTCCGCGGACGAGGCCGAGACCCCGACGGATGTCGATTTAG back to top Coding sequence (CDS) from alignment at chr22:667357..672012-
>NO22G02150.1 ID=NO22G02150.1|Name=NO22G02150.1|organism=Nannochloropsis oceanica|type=CDS|length=2148bp|location=Sequence derived from alignment at chr22:667357..672012- (Nannochloropsis oceanica) back to top