NO22G01990.1, NO22G01990.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO22G01990.1
Unique Name	NO22G01990.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1636
Alignment location	chr22:601607..604362 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr22	genome	chr22:601607..604362 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO22G01990.1 vs.
Match: WP_090481521.1 (DUF177 domain-containing protein [Erythrobacter nanhaisediminis])

HSP 1 Score: 77.0 bits (188), Expect = 9.800e-11
Identity = 51/135 (37.78%), Postives = 72/135 (53.33%), Query Frame = 0

Query:   93 LKVQANEEERRKLAERFEFLNLHTLTANVSIARPHWGCLLAEGSLSASLDRHCVVTGELFPFEFTTTFSTYIKEVGGAVPLYGNSQQEEFGQGAN-DMEEDDFDDEVEAGTSIDVGEIVAQYLYLNMPPYPTLPG 227
            + ++A+E ER  LA RF    +HTLTA V       G +LAEG L+A+L++ C VT E F +E + TFS      G         +  E+ + A  ++ EDD D+    G S D+GE +AQ L L + PY   PG
Sbjct:    1 MTIEADEAERAALASRFGITAIHTLTAEVEFGEKD-GAVLAEGKLAATLEQPCAVTREDFTYEVSETFSLRFVPEG---------RMGEYEEDAEFELTEDDLDEIEYEGDSFDLGEAIAQELALAIDPYREGPG 125

The following BLAST results are available for this feature:

BLAST of NO22G01990.1 vs.

BLAST of NO22G01990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
WP_090481521.1	9.800e-11	37.78	DUF177 domain-containing protein [Erythrobacter na...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO22G01990	NO22G01990	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO22G01990.1	NO22G01990.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO22G01990.1.cds1	NO22G01990.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G01990.1.cds2	NO22G01990.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G01990.1.cds3	NO22G01990.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G01990.1.cds4	NO22G01990.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G01990.1.cds5	NO22G01990.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G01990.1.cds6	NO22G01990.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr22:601607..604362-
coding sequence from alignment at chr22:601607..604362-

mRNA sequence

>NO22G01990.1 ID=NO22G01990.1|Name=NO22G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1636bp
CAGCAGAAGCCGGAGGAAGACGTACATGCAGCTATCTTGAACTCATGCCG
GCACGCCAACCGCAGCGGCCATACCACCGACCAGGCCTTGGCCTCCTCCT
GGTGTGTCTACTCAATACCTCCTATGCCTTTTTTCGCCATTCAACCACCA
CCACGCTTGGAAGCAGCAGTATCGTCAGCACTGACGTTGTCCGACAGCAA
CAGAGGGCTATGTGTAACGTGGCTTTAGCGGCCGGCAAGAAGAAGCAGGC
CTGGACGCCGCCCGAGAACGAATTCTCACGGACCATCGAGTTGGACGACG
TCATGCGCCGCCCCACCCTCCTCAAGGTACAAGCGAACGAGGAAGAGAGG
AGGAAGCTGGCCGAGCGATTTGAATTTTTAAATCTGCACACGCTGACGGC
CAACGTCTCGATTGCCAGGCCCCATTGGGGGTGCCTCCTTGCGGAGGGAA
GCCTCTCCGCATCACTGGACCGTCACTGCGTAGTAACGGGCGAGCTGTTT
CCGTTTGAATTTACGACAACGTTTTCCACTTATATCAAGGAGGTGGGCGG
TGCCGTCCCTCTCTACGGGAATAGCCAGCAGGAGGAGTTCGGGCAGGGCG
CGAACGACATGGAGGAAGATGACTTTGATGACGAGGTGGAGGCGGGCACC
TCCATCGACGTGGGCGAGATCGTGGCGCAGTACCTTTATCTTAATATGCC
TCCTTACCCCACCCTTCCTGGGAAGAGCCTCGACGATATTCCTGACGAGG
TCGTCTTCGAATGGGGCTCGGGCGATGGGGAGGAAGGGGGGGAAGGAGGA
CAGGGGGGAGGAAAGGCTAAGAAGAAGAAAAAAGAGAGGCCAGGGTGGTG
AGGAGGGAGTATCGGGAGGGAGAGAGGGAGGGAGCGAGGGAGGGAGCGAG
GGAGGGAGGGAGAGGGGGTCAAAGAACCAAAAAGGCTCATGTACACGACA
CGATAGCGGGCAAGATGGGGAATGCCGGATGGATGGATGGAGGGAGGGAT
GGAAGCAGGGAGGGATGACCAAGTCGGTGCTCCATGCCGTTTGTATTTTA
TGTTTCTTTGTAGGGGCTGGAGCGCCTAAGTCTTGATATATCTGCGCAAA
CACGGCAACATGTCTTTCTTCTTCTCGCTCTCCCTCCCTGCCTCCTTGCC
TCCTTCCCTCCTTTAATTCCTTATTACATAAATGCTCTTCGATCCTCCCT
TTCTCCTTCCCTTACTCCTTCCCTCCCTCCCTCCCTCTGGCCCGTCTACA
ATGACGACGACAAGGAGGAGGAGGAGGAAGGGGAGAGCGCGTTTCCCCCC
TCTCTCCCATCCTCCTGCTTCTGCTCCTGACGTTGCATTCCTCCATCCCT
CCCTTCCTCCCTCTCGCCTTCCTCTTGTCGGGCTACAGCCTCTTGGATGC
GTCGATAGCGATTGAGAGTTTCGCGGGCCCGGCGGAAGGTGCTGCGCGAG
GGAGGGAGGGCGGGAGAGGGGGAGGGATGGAGGGAGTAAGTTGTGTAGAT
TTGTTATTAATAAGCCGCCATACATGTCACATGGGAGGAGGAAGGGAGGG
GGGGAGGAAGCAAGAGAGGTGAAGGAGGGAATGGAGAGATACACCGACGA
TTCTCGAAAGAGAGCAAGCCGAGGGAAGGGTGGGAA

protein sequence of NO22G01990.1

>NO22G01990.1-protein ID=NO22G01990.1-protein|Name=NO22G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MPARQPQRPYHRPGLGLLLVCLLNTSYAFFRHSTTTTLGSSSIVSTDVVR
QQQRAMCNVALAAGKKKQAWTPPENEFSRTIELDDVMRRPTLLKVQANEE
ERRKLAERFEFLNLHTLTANVSIARPHWGCLLAEGSLSASLDRHCVVTGE
LFPFEFTTTFSTYIKEVGGAVPLYGNSQQEEFGQGANDMEEDDFDDEVEA
GTSIDVGEIVAQYLYLNMPPYPTLPGKSLDDIPDEVVFEWGSGDGEEGGE
GGQGGGKAKKKKKERPGW*

mRNA from alignment at chr22:601607..604362-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO22G01990.1 ID=NO22G01990.1|Name=NO22G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2756bp|location=Sequence derived from alignment at chr22:601607..604362- (Nannochloropsis oceanica)
CAGCAGAAGCCGGAGGAAGACGTACATGCAGCTATCTTGAACTCATGCCG
GCACGCCAACCGCAGCGGCCATACCACCGACCAGGCCTTGGCCTCCTCCT
GGTGTGTCTACTCAATACCTCCTATGCCTTTTTTCGCCATTCAACCACCA
CCACGCTTGGAAGCAGCAGTATCGTCAGCACTGACGTTGTCCGACAGCAA
CAGAGGGCTATGTGTAACGTGGCTTTAGCGGTAAGAGAAGGGAAAGAGGG
GGATGCGAAATGTAATGGAAGGGTAGGGCGCTTGTGGGCGGCACCGGGGG
TTGGTCCTCAATGTGTCTTCCTCTTCCTCGTCCTAGTGCATCTACATCGT
CAATTGGGAGAATTCCACCATTTAGGAGCCGTAGATGACTTATTTTGCTC
ATTTGAGCATGAAGACTGCGAAAACGGGGTCAGTATCTCGCGTACTGCGT
CCCCTTCCCCCATCCCACACACGCGTTCATCACTCGCCCCTCACTCCTTT
TCCTCCATCCCACCACCTTCATGTACACACACACAGGCCGGCAAGAAGAA
GCAGGCCTGGACGCCGCCCGAGAACGAATTCTCACGGACCATCGAGTGAG
CACAACACCCTCCCTCCCTCCCTCCCTTTCTCCCTTCCTTCCTCCTTCCC
TTCCTCCCTCCCTCTTCCTTTCCGTTCTGACATTTGTAAAAGATGTGGAG
ACCGTCCATTTTTGAGCTCTGAGACGATTGAAAAAAAAGAGGAAAGTCAC
TGGATGATCTTCATGAACTCCACATTGACCCCGTTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCCAGGTTGGACGACGTCATGCGCCGCCCCACCCTC
CTCAAGGTACAAGCGAACGAGGAAGAGAGGAGGAAGCTGGCCGAGCGATT
TGAATTTTTAAATCTGCACACGCTGACGGCCAACGTCTCGATTGCCAGGC
CCCATTGGGGGTAAGGAGGGAAGGAGGGAGGGAGGGAGGGAAGGACGACG
AACATGGCGCAAGATTTCGTTTCCCTTATTCTTCCTCGCTACCCTCCCTC
CTTCTCTCTCTCCCTCACTCAGGTGCCTCCTTGCGGAGGGAAGCCTCTCC
GCATCACTGGACCGTCACTGCGTAGTAACGGGCGAGCTGTTTCCGTTTGA
ATTTACGACAACGTTTTCCACTTATATCAAGGTGAGGGAGGGCGGGAGGG
CGGGAGGGCGGGAGGGGGGGAAGAAGGGCGGGATGGAGGGAGGGTGGGTT
AGTCGAGAGGTTCTGGCCTTCAGACCACGCGAATCATTCACCTTCTTCAC
GTTGGTCTCGTTACCTTATGTTCTTCCACGATCACCCCATTTCCCACTCA
CTTATTCTTCCCTCCTTCCCTCCCTCCCTCCATCCCTTCCTCCGTCCCTC
CCTCCCTTCGTCAGGAGGTGGGCGGTGCCGTCCCTCTCTACGGGAATAGC
CAGCAGGAGGAGTTCGGGCAGGGCGCGAACGACATGGAGGAAGATGACTT
TGATGACGAGGTGGAGGTGAGGGAGGGAGGCAGGGAGGGAGGGAGGGAAG
GAGTGAGTGATTGTCAACAACATATCCTCCCACTCTTTCCCCTTCGCACA
CGCATGCGGGCCCCTCTTAAAGACTCCATTTTTTTAAAATACGTCAACCA
AAAAAGTAATACATAATGAATAAAATAAATCAATGAATGAAAAAAAATGA
ATTTCAATCAAATGTAATAAAATCAACAAATCAATCAATGAAAAAACACA
CGCACGCACAGGCGGGCACCTCCATCGACGTGGGCGAGATCGTGGCGCAG
TACCTTTATCTTAATATGCCTCCTTACCCCACCCTTCCTGGGAAGAGCCT
CGACGATATTCCTGACGAGGTCGTCTTCGAATGGGGCTCGGGCGATGGGG
AGGAAGGGGGGGAAGGAGGACAGGGGGGAGGAAAGGCTAAGAAGAAGAAA
AAAGAGAGGCCAGGGTGGTGAGGAGGGAGTATCGGGAGGGAGAGAGGGAG
GGAGCGAGGGAGGGAGCGAGGGAGGGAGGGAGAGGGGGTCAAAGAACCAA
AAAGGCTCATGTACACGACACGATAGCGGGCAAGATGGGGAATGCCGGAT
GGATGGATGGAGGGAGGGATGGAAGCAGGGAGGGATGACCAAGTCGGTGC
TCCATGCCGTTTGTATTTTATGTTTCTTTGTAGGGGCTGGAGCGCCTAAG
TCTTGATATATCTGCGCAAACACGGCAACATGTCTTTCTTCTTCTCGCTC
TCCCTCCCTGCCTCCTTGCCTCCTTCCCTCCTTTAATTCCTTATTACATA
AATGCTCTTCGATCCTCCCTTTCTCCTTCCCTTACTCCTTCCCTCCCTCC
CTCCCTCTGGCCCGTCTACAATGACGACGACAAGGAGGAGGAGGAGGAAG
GGGAGAGCGCGTTTCCCCCCTCTCTCCCATCCTCCTGCTTCTGCTCCTGA
CGTTGCATTCCTCCATCCCTCCCTTCCTCCCTCTCGCCTTCCTCTTGTCG
GGCTACAGCCTCTTGGATGCGTCGATAGCGATTGAGAGTTTCGCGGGCCC
GGCGGAAGGTGCTGCGCGAGGGAGGGAGGGCGGGAGAGGGGGAGGGATGG
AGGGAGTAAGTTGTGTAGATTTGTTATTAATAAGCCGCCATACATGTCAC
ATGGGAGGAGGAAGGGAGGGGGGGAGGAAGCAAGAGAGGTGAAGGAGGGA
ATGGAGAGATACACCGACGATTCTCGAAAGAGAGCAAGCCGAGGGAAGGG
TGGGAA

Coding sequence (CDS) from alignment at chr22:601607..604362-

>NO22G01990.1 ID=NO22G01990.1|Name=NO22G01990.1|organism=Nannochloropsis oceanica|type=CDS|length=807bp|location=Sequence derived from alignment at chr22:601607..604362- (Nannochloropsis oceanica)
ATGCCGGCACGCCAACCGCAGCGGCCATACCACCGACCAGGCCTTGGCCT
CCTCCTGGTGTGTCTACTCAATACCTCCTATGCCTTTTTTCGCCATTCAA
CCACCACCACGCTTGGAAGCAGCAGTATCGTCAGCACTGACGTTGTCCGA
CAGCAACAGAGGGCTATGTGTAACGTGGCTTTAGCGGCCGGCAAGAAGAA
GCAGGCCTGGACGCCGCCCGAGAACGAATTCTCACGGACCATCGAGTTGG
ACGACGTCATGCGCCGCCCCACCCTCCTCAAGGTACAAGCGAACGAGGAA
GAGAGGAGGAAGCTGGCCGAGCGATTTGAATTTTTAAATCTGCACACGCT
GACGGCCAACGTCTCGATTGCCAGGCCCCATTGGGGGTGCCTCCTTGCGG
AGGGAAGCCTCTCCGCATCACTGGACCGTCACTGCGTAGTAACGGGCGAG
CTGTTTCCGTTTGAATTTACGACAACGTTTTCCACTTATATCAAGGAGGT
GGGCGGTGCCGTCCCTCTCTACGGGAATAGCCAGCAGGAGGAGTTCGGGC
AGGGCGCGAACGACATGGAGGAAGATGACTTTGATGACGAGGTGGAGGCG
GGCACCTCCATCGACGTGGGCGAGATCGTGGCGCAGTACCTTTATCTTAA
TATGCCTCCTTACCCCACCCTTCCTGGGAAGAGCCTCGACGATATTCCTG
ACGAGGTCGTCTTCGAATGGGGCTCGGGCGATGGGGAGGAAGGGGGGGAA
GGAGGACAGGGGGGAGGAAAGGCTAAGAAGAAGAAAAAAGAGAGGCCAGG
GTGGTGA

Synonyms

Publications