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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr22 | genome | chr22:580290..583692 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO22G01950.1 vs.
Match: CBJ27751.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 144.8 bits (364), Expect = 8.000e-31 Identity = 191/581 (32.87%), Postives = 264/581 (45.44%), Query Frame = 0
Query: 37 KTLEEEAAEALAREARGERKDEDEEEGEG-GKEGERVIAL---QPLAHR--------RLDVGEDAP-------MLVKNAVPVPKDITDEKARLQYELSLREDDIDSSSNVYKMVPVEEFGAALLRGMGWAGPSAD-----------DVQIYQASARPQGLGLGANPAALDLDPEGHWKRKGAKKGGRKGGGEGGTTATAAQEALVKAAEERLRKQ------VLKDGDVVRLAKGEYGGKRAR------VTRAAGVAGLHMIEVSLEDVERHPASLPPSLLVLRIKQTDCFLVPPSELQMRPFRGGREGGRE---GGREGGRSRSRSPGSGSRARARDGGREGGREGKKRRSASRSSDDESSSKRKSKKEKKKKEKKKGTKRSRSRSPSSLPRGREEEEEKEEREEKRRERKRAHQEEEGRKGREKEKEKKSKSSSSSS----YADDPRGT--------SWLLPHIKVRIITERPLGGREGGKEREKARSFYRAKGVVVDVPRPGEATVHLDEGGRILEGVKARHLETALPPVGGIVLLLRGPHRLQRGKLLEVESGREEGVVQLVDEDLQVVRMPLDDMAE 561
K+L++ AAEA+A+E+ R D + G G + +RVI + P A DA +L +N +P ++ E A+ +++L R +D + S Y VPV EFGAALLRGMGW GP D D+ R LGLGA P P KR KK G K ++ K EERLR L DVV L++G GG+R R V + GV GL+ I V +ED + + ++ V EL RPF ++ GG + GRSRSRS S + R+ GR R+ K ++ +S SSSKR+ + R SPS R +EE ++ R + RR+ ++ GR R+ KKS+ S Y++ G +WL +I+VR+I + GGR Y KG VVDVPR G+ATV +D G +LEGVK RHLET LP GG V+++RG + GKLL +E +VQ V EDL+ V + LDD+AE
Sbjct: 128 KSLDQLAAEAIAKES--VRGDGSSADAFGLGLDSDRVIGMIGKNPAAGEGDSSNGAATAKTTPDAAGSKRNTGLLEQNMIPGLMEVDGEDAKFRHDLGHRAEDFSARSKAYVDVPVAEFGAALLRGMGWKGPEGDGGGGGVGGGGPDLS-KDIEPRHHRLGLGAQPK-----PPEEMKRPRTKKPGEKPRSSDAERLKIWEK---KVQEERLRASRPSAAAQLAVMDVVELSEG--GGERGRRRPRAMVLKTQGVPGLNKISVRMEDTGEK----------VLVDKSTATRVSEDELARRPFSENKDRSSRSSSGGGKRGRSRSRSRSRSSGSVEREDGRRERRDKKDKKKHKKSGGSSSSSKRERSSD------------GRRSSPSPRRRRSDEENDRHRRRDGRRD-----DDDGGRGRRDDIPAKKSRRDDGDSERGRYSNGNAGNGGQQSGPPAWLRANIRVRVIHKSYGGGRA-----------YLGKGRVVDVPRAGQATVRMDLGELVLEGVKERHLETVLPARGGKVIVVRGAEKGATGKLLAKNKEKETALVQ-VYEDLRAVTLSLDDVAE 656
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO22G01950.1 ID=NO22G01950.1|Name=NO22G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2054bp
ACACACACGCACACACACGTGTACACACACGTACACACGTGTACACACAC
GTACACACAAATACACACACACACACCCCATTCATCACTCCCGACAGGAC
GAGGACGAGGACGAGGAAGGGGACGGGCCGGAGCAAGGCGCCAAGTCACA
CTATATTCGCTCCCTCGACGACAAGCACGGGAAGAAGGAGAAGGTGGAGA
AGCCGCCCATGGTGATTGCAGTGCCAGTCCCTCGCTGGAATAGGAGGGAG
GAAGAGGGGGCAAAGGAGGGCAGGAAGGAGGAGCATGGTGCACCCCCACC
GCTGAAGAAAAAGGGTAAGACGTTGGAGGAAGAGGCAGCAGAGGCTTTGG
CACGAGAAGCACGAGGAGAAAGGAAAGACGAGGACGAGGAGGAGGGGGAG
GGAGGGAAGGAGGGAGAGCGGGTCATCGCATTGCAGCCTCTGGCCCATCG
GCGATTGGATGTGGGGGAAGACGCTCCCATGCTGGTGAAGAATGCTGTGC
CTGTACCAAAAGACATCACCGACGAGAAGGCCCGGCTCCAGTACGAGCTG
TCCCTGCGCGAGGATGACATTGACTCCTCCTCAAATGTCTATAAGATGGT
ACCGGTGGAAGAGTTCGGCGCTGCCCTCCTTCGAGGCATGGGCTGGGCTG
GTCCCTCTGCTGATGACGTTCAGATATATCAAGCAAGTGCCCGACCACAG
GGGCTGGGGTTGGGCGCAAACCCGGCAGCTCTCGACCTCGATCCTGAAGG
GCACTGGAAGAGGAAGGGGGCCAAGAAGGGAGGGAGGAAGGGAGGGGGGG
AGGGAGGGACTACGGCGACGGCGGCCCAGGAGGCCCTGGTCAAGGCGGCG
GAGGAAAGGCTGAGGAAACAAGTATTGAAGGACGGGGACGTCGTTCGTCT
GGCCAAGGGGGAATATGGCGGGAAACGGGCGCGGGTCACACGGGCGGCTG
GCGTGGCCGGTCTGCACATGATCGAGGTCTCTCTCGAAGACGTAGAGCGT
CATCCTGCCTCTCTCCCTCCCTCCCTCCTTGTTCTCCGCATCAAGCAGAC
GGACTGCTTTCTCGTCCCGCCTTCGGAATTGCAGATGCGGCCGTTCCGGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGATCACGC
TCTCGCTCTCCGGGGTCTGGGTCAAGGGCGAGGGCGAGGGATGGAGGGAG
GGAGGGAGGGAGGGAGGGGAAGAAGAGGCGCAGTGCCAGCAGGAGTAGTG
ATGATGAGAGCAGCAGTAAGAGGAAGAGTAAGAAGGAGAAGAAGAAGAAG
GAGAAGAAGAAGGGAACGAAGCGCTCTCGTTCGCGTTCTCCGTCGTCACT
GCCTCGAGGGAGGGAGGAGGAGGAAGAGAAGGAGGAGAGGGAGGAAAAAA
GAAGGGAAAGGAAGAGAGCTCACCAGGAAGAAGAGGGACGAAAAGGGCGC
GAAAAGGAGAAGGAAAAAAAGTCCAAGTCCTCCTCCTCCTCCTCCTACGC
TGATGATCCTCGAGGCACTTCCTGGCTCCTCCCCCATATCAAGGTGCGCA
TTATAACCGAGCGACCCCTGGGAGGGAGGGAAGGAGGGAAGGAAAGAGAA
AAAGCACGGAGCTTCTACCGCGCGAAGGGGGTGGTAGTGGATGTGCCACG
ACCCGGGGAGGCGACAGTCCACTTGGACGAGGGCGGGAGGATTTTGGAAG
GCGTTAAAGCCCGGCACCTTGAAACGGCTCTTCCACCCGTTGGGGGCATC
GTGCTCCTTCTCCGCGGGCCTCATCGGTTACAGCGAGGGAAGCTTCTGGA
GGTGGAGAGCGGGAGGGAGGAAGGAGTGGTCCAGCTGGTGGATGAGGACC
TACAGGTGGTGCGGATGCCTTTGGACGATATGGCCGAATCTCGAAGGATT
GACTGAAGGAGGGAGGGGGAAGGGAGGGAGAGAGAGGTGTACATCTAGAA
GGACACACAAAGCAATAAGCAATGGAGTGATTTGAAAAATAGATGGAAGT
AGGGAGGTGAAAATATCGTGCGCGCCGACCGACATCGTCATCTGCATTGC
CTCA back to topprotein sequence of NO22G01950.1 >NO22G01950.1-protein ID=NO22G01950.1-protein|Name=NO22G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=566bp
MVIAVPVPRWNRREEEGAKEGRKEEHGAPPPLKKKGKTLEEEAAEALARE
ARGERKDEDEEEGEGGKEGERVIALQPLAHRRLDVGEDAPMLVKNAVPVP
KDITDEKARLQYELSLREDDIDSSSNVYKMVPVEEFGAALLRGMGWAGPS
ADDVQIYQASARPQGLGLGANPAALDLDPEGHWKRKGAKKGGRKGGGEGG
TTATAAQEALVKAAEERLRKQVLKDGDVVRLAKGEYGGKRARVTRAAGVA
GLHMIEVSLEDVERHPASLPPSLLVLRIKQTDCFLVPPSELQMRPFRGGR
EGGREGGREGGRSRSRSPGSGSRARARDGGREGGREGKKRRSASRSSDDE
SSSKRKSKKEKKKKEKKKGTKRSRSRSPSSLPRGREEEEEKEEREEKRRE
RKRAHQEEEGRKGREKEKEKKSKSSSSSSYADDPRGTSWLLPHIKVRIIT
ERPLGGREGGKEREKARSFYRAKGVVVDVPRPGEATVHLDEGGRILEGVK
ARHLETALPPVGGIVLLLRGPHRLQRGKLLEVESGREEGVVQLVDEDLQV
VRMPLDDMAESRRID* back to topmRNA from alignment at chr22:580290..583692- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO22G01950.1 ID=NO22G01950.1|Name=NO22G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=3403bp|location=Sequence derived from alignment at chr22:580290..583692- (Nannochloropsis oceanica)
ACACACACGCACACACACGTGTACACACACGTACACACGTGTACACACAC
GTACACACAAATACACACACACACACCCCATTCATCACTCCCGACAGGAC
GAGGACGAGGACGAGGAAGGGGACGGGCCGGAGCAAGGCGCCAAGTCACA
CTATATTCGCTCCCTCGACGACAAGCACGGGAAGAAGGAGAAGGTGGAGA
AGCCGCCCATGGTGATTGCAGTGCCAGTCCCTCGCTGGAATAGGAGGGAG
GAAGAGGGGGCAAAGGAGGGCAGGAAGGAGGAGCATGGTGCACCCCCACC
GCTGAAGAAAAAGGGTAAGACGTTGGAGGAAGAGGCAGCAGAGGCTTTGG
CACGAGAAGCACGAGGAGAAAGGAAAGACGAGGACGAGGAGGAGGGGGAG
GGAGGGAAGGAGGGAGAGCGGGTCATCGCATTGCAGCCTCTGGCCCATCG
GCGATTGGATGTGGGGGAAGACGCTCCCATGCTGGTGAAGAATGCTGTGC
CTGTACCAAAAGACATCACCGACGAGAAGGTGAGTCCCTCGCTCCATCTC
TCCCTCCCTCCCTCCCTCCCTCCCTGGCCCATGGCCATGATCATGGACAA
CGCATGGTTGCAGAGAGGGAGGGAAGGAGGGAGGGAGGGAGAGAAGGAGG
GAGGGAGGAAAGGGTTCTAGTACTTCGTTTACTATCTGCTCTGCTTTTGC
TCAATTTCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCATCCTC
CCTTCCTTCCTGGTAGGCCCGGCTCCAGTACGAGCTGTCCCTGCGCGAGG
ATGACATTGACTCCTCCTCAAATGTCTATAAGGTAAGAGAGGGAGGGAGG
GAGGGAGGGAGGAAAGGAGGGAGAGGAAGTGACATTGTGAAGCTTGGGCT
CCGTGGGTGTCAACTCCTCCACGCCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCTCATCAGATGGTACCGGTGGAAGAGTTCGGCGCTGCCCTCCTTCGA
GGCATGGGCTGGGCTGGTCCCTCTGCTGATGACGTTCAGATATATCAAGC
AAGTGCCCGACCACAGGGGTAAGCCAGCCAGCCCTCCCTCCCTCCCTCCC
TCCCTCCCTTCCTTTATTCTCGCCTCACGGCAGTCCTTTCTCTCGTGCAA
GCACACCGCTCCTTCTTTTCTTTCTTTTCCTCCTTCCCTCTTTTTCCTCC
TACCCACCCTCCCATTGGCCTTCAAGTCCTAATTTTCTTCCTTCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
AGGCTGGGGTTGGGCGCAAACCCGGCAGCTCTCGACCTCGATCCTGAAGG
GCACTGGAAGAGGAAGGGGGCCAAGAAGGGAGGGAGGAAGGGAGGGGGGG
AGGGAGGGACTACGGCGACGGCGGCCCAGGAGGCCCTGGTCAAGGCGGCG
GAGGAAAGGCTGAGGAAACAAGTATTGAAGGTAGGGGGTTAGGGAGCGAG
GGAGGGAAGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGCTGGGTAGGTCGTCAGAAGGACAAGACAAGACGG
TGTCCAACAGACAGATTCACCCCTCCCTCCCTCCCTCCCCCGACAGGACG
GGGACGTCGTTCGTCTGGCCAAGGGGGAATATGGCGGGAAACGGGCGCGG
GTCACACGGGCGGCTGGTACGGAGGGAAGGAAGGGGGGAGGGAGGGAGGG
AGGGAAGAAAGTGGGTTGGGGGGGGGGTAGAAGATGAACATCTTTGTGTA
CGGATGGATGGCGGCCGGAGGGAGGGAGGGAGGGAGGCGAGGAGGGAAGG
AGGGAGAGAGGGAGGGGGGAAGGGAGGAATCAGCCTTGCACATCAGGAGG
AGAGCTCTGAGCCTCAAATGCCCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCCTTCCCCTCCAGGCGTGGCCGGTCTGCACATGATC
GAGGTCTCTCTCGAAGACGTAGAGCGTCATCCTGCCTCTCTCCCTCCCTC
CCTCCTTGTTCTCCGCATCAAGCAGACGGACTGCTTTCTCGTCCCGCCTT
CGGAATTGCAGATGCGGCCGTTCCGGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGATCACGCTCTCGCTCTCCGGGGTCTGGGTC
AAGGGCGAGGGCGAGGGATGGAGGGAGGGAGGGAGGGAGGGAGGGGAAGA
AGAGGCGCAGTGCCAGCAGGAGTAGTGATGATGAGAGCAGCAGTAAGAGG
AAGAGTAAGAAGGAGAAGAAGAAGAAGGAGAAGAAGAAGGGAACGAAGCG
CTCTCGTTCGCGTTCTCCGTCGTCACTGCCTCGAGGGAGGGAGGAGGAGG
AAGAGAAGGAGGAGAGGGAGGAAAAAAGAAGGGAAAGGAAGAGAGCTCAC
CAGGAAGAAGAGGGACGAAAAGGGCGCGAAAAGGAGAAGGAAAAAAAGTC
CAAGTCCTCCTCCTCCTCCTCCTACGCTGATGATCCTCGAGGTGCGTAGT
TCCAAACCTCCCTCCTTCCCATCCTCCCTTCCTTCCTCCCTTTCCTCTCT
TCCTTCCCTCCGCCAGCCTTCCATCACACGTGAAGAATCCTGACTTCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCCTTAGGCA
CTTCCTGGCTCCTCCCCCATATCAAGGTGCGCATTATAACCGAGCGACCC
CTGGGAGGGAGGGAAGGAGGGAAGGAAAGAGAAAAAGCACGGAGCTTCTA
CCGCGCGAAGGGGGTGGTAGTGGATGTGCCACGACCCGGGGAGGCGACAG
TCCACTTGGACGAGGGCGGGAGGATTTTGGAAGGTAAGGAGGGATGGAGG
GTAAGGAGGGATGGAGGGACGGAGGGAGGGGAGGCGAACAAGGGCAGTGA
TGTCTCTTTTCCACGCTCCACTTTACTTTTTCAAGTCCAAGACTCCGCAC
GCTCTTCCTCCCCTCCATCCTCACTTTTCCTCTTTTCCTCCTTCTTCAGG
CGTTAAAGCCCGGCACCTTGAAACGGCTCTTCCACCCGTTGGGGGCATCG
TGCTCCTTCTCCGCGGGCCTCATCGGTTACAGCGAGGGAAGCTTCTGGAG
GTGGAGAGCGGGAGGGAGGAAGGAGTGGTCCAGCTGGTGGATGAGGACCT
ACAGGTGGTGCGGATGCCTTTGGACGATATGGCCGAATCTCGAAGGATTG
ACTGAAGGAGGGAGGGGGAAGGGAGGGAGAGAGAGGTGTACATCTAGAAG
GACACACAAAGCAATAAGCAATGGAGTGATTTGAAAAATAGATGGAAGTA
GGGAGGTGAAAATATCGTGCGCGCCGACCGACATCGTCATCTGCATTGCC
TCA back to topCoding sequence (CDS) from alignment at chr22:580290..583692- >NO22G01950.1 ID=NO22G01950.1|Name=NO22G01950.1|organism=Nannochloropsis oceanica|type=CDS|length=1698bp|location=Sequence derived from alignment at chr22:580290..583692- (Nannochloropsis oceanica)
ATGGTGATTGCAGTGCCAGTCCCTCGCTGGAATAGGAGGGAGGAAGAGGG
GGCAAAGGAGGGCAGGAAGGAGGAGCATGGTGCACCCCCACCGCTGAAGA
AAAAGGGTAAGACGTTGGAGGAAGAGGCAGCAGAGGCTTTGGCACGAGAA
GCACGAGGAGAAAGGAAAGACGAGGACGAGGAGGAGGGGGAGGGAGGGAA
GGAGGGAGAGCGGGTCATCGCATTGCAGCCTCTGGCCCATCGGCGATTGG
ATGTGGGGGAAGACGCTCCCATGCTGGTGAAGAATGCTGTGCCTGTACCA
AAAGACATCACCGACGAGAAGGCCCGGCTCCAGTACGAGCTGTCCCTGCG
CGAGGATGACATTGACTCCTCCTCAAATGTCTATAAGATGGTACCGGTGG
AAGAGTTCGGCGCTGCCCTCCTTCGAGGCATGGGCTGGGCTGGTCCCTCT
GCTGATGACGTTCAGATATATCAAGCAAGTGCCCGACCACAGGGGCTGGG
GTTGGGCGCAAACCCGGCAGCTCTCGACCTCGATCCTGAAGGGCACTGGA
AGAGGAAGGGGGCCAAGAAGGGAGGGAGGAAGGGAGGGGGGGAGGGAGGG
ACTACGGCGACGGCGGCCCAGGAGGCCCTGGTCAAGGCGGCGGAGGAAAG
GCTGAGGAAACAAGTATTGAAGGACGGGGACGTCGTTCGTCTGGCCAAGG
GGGAATATGGCGGGAAACGGGCGCGGGTCACACGGGCGGCTGGCGTGGCC
GGTCTGCACATGATCGAGGTCTCTCTCGAAGACGTAGAGCGTCATCCTGC
CTCTCTCCCTCCCTCCCTCCTTGTTCTCCGCATCAAGCAGACGGACTGCT
TTCTCGTCCCGCCTTCGGAATTGCAGATGCGGCCGTTCCGGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGATCACGCTCTCGCTC
TCCGGGGTCTGGGTCAAGGGCGAGGGCGAGGGATGGAGGGAGGGAGGGAG
GGAGGGAGGGGAAGAAGAGGCGCAGTGCCAGCAGGAGTAGTGATGATGAG
AGCAGCAGTAAGAGGAAGAGTAAGAAGGAGAAGAAGAAGAAGGAGAAGAA
GAAGGGAACGAAGCGCTCTCGTTCGCGTTCTCCGTCGTCACTGCCTCGAG
GGAGGGAGGAGGAGGAAGAGAAGGAGGAGAGGGAGGAAAAAAGAAGGGAA
AGGAAGAGAGCTCACCAGGAAGAAGAGGGACGAAAAGGGCGCGAAAAGGA
GAAGGAAAAAAAGTCCAAGTCCTCCTCCTCCTCCTCCTACGCTGATGATC
CTCGAGGCACTTCCTGGCTCCTCCCCCATATCAAGGTGCGCATTATAACC
GAGCGACCCCTGGGAGGGAGGGAAGGAGGGAAGGAAAGAGAAAAAGCACG
GAGCTTCTACCGCGCGAAGGGGGTGGTAGTGGATGTGCCACGACCCGGGG
AGGCGACAGTCCACTTGGACGAGGGCGGGAGGATTTTGGAAGGCGTTAAA
GCCCGGCACCTTGAAACGGCTCTTCCACCCGTTGGGGGCATCGTGCTCCT
TCTCCGCGGGCCTCATCGGTTACAGCGAGGGAAGCTTCTGGAGGTGGAGA
GCGGGAGGGAGGAAGGAGTGGTCCAGCTGGTGGATGAGGACCTACAGGTG
GTGCGGATGCCTTTGGACGATATGGCCGAATCTCGAAGGATTGACTGA back to top
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