NO22G01920.1, NO22G01920.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO22G01920.1
Unique Name	NO22G01920.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1122
Alignment location	chr22:574391..576836 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr22	genome	chr22:574391..576836 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO22G01920.1 vs.
Match: CBN77130.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 138.7 bits (348), Expect = 3.800e-29
Identity = 63/147 (42.86%), Postives = 97/147 (65.99%), Query Frame = 0

Query:   10 DWMFKVPEGLSCNAPFQEARGLAKAAQKWLLVNVQDFDNFASHRLNRDIWAHDTIHCLVDSGFLFWQRDKSTPEGQQFLSRYHIQPDALPVIAIIDPRTGGKVREWMAATMKAMDLSTILADFLNQNSLDSLAAPRVQQRSSSFGSI 157
            DW+FK PEGLS  + F E R + K  +KWL+VN+QD   FASHRLN+D+W+++TI  L+   F+FWQR+K+  + + ++ +Y+++   LP  AI+DPRTG ++   +   ++  DLS  L +FL  NS+D + AP V  R+   G+I
Sbjct:  261 DWIFKAPEGLSFPSDFLETRQICKEQKKWLMVNIQDHQEFASHRLNKDVWSNETILTLLRGNFIFWQRNKALRQARYYVDKYNLEGQVLPHTAILDPRTGAQLLR-VVGFVEPEDLSMALVEFLENNSIDQVKAPAV--RTIGMGNI 404

The following BLAST results are available for this feature:

BLAST of NO22G01920.1 vs.

BLAST of NO22G01920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBN77130.1	3.800e-29	42.86	conserved unknown protein [Ectocarpus siliculosus]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO22G01920	NO22G01920	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO22G01920.1	NO22G01920.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO22G01920.1.cds1	NO22G01920.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G01920.1.cds2	NO22G01920.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G01920.1.cds3	NO22G01920.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G01920.1.cds4	NO22G01920.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G01920.1.cds5	NO22G01920.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G01920.1.cds6	NO22G01920.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G01920.1.cds7	NO22G01920.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G01920.1.cds8	NO22G01920.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G01920.1.cds9	NO22G01920.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr22:574391..576836-
coding sequence from alignment at chr22:574391..576836-

mRNA sequence

>NO22G01920.1 ID=NO22G01920.1|Name=NO22G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1122bp
ATGGGAGCCGGCGACGATCCCTCCCTGGACTGGATGTTCAAGGTGCCCGA
AGGACTCTCGTGCAACGCGCCCTTTCAAGAAGCTCGGGGCTTGGCCAAGG
CGGCCCAAAAGTGGCTCCTGGTGAATGTGCAAGACTTCGATAATTTCGCC
TCCCATCGCCTCAATCGCGACATATGGGCCCACGACACGATCCACTGTCT
CGTGGACTCCGGCTTCCTCTTCTGGCAGCGGGACAAGAGCACGCCAGAGG
GACAGCAATTCCTTTCCCGCTACCACATCCAGCCTGACGCCCTTCCCGTC
ATAGCCATCATTGATCCCCGCACCGGAGGGAAGGTTCGGGAGTGGATGGC
CGCCACCATGAAGGCCATGGACCTCTCCACCATCCTGGCCGACTTCCTCA
ACCAGAACTCGCTGGACTCGCTGGCGGCCCCTCGAGTCCAACAACGCTCC
TCGTCTTTTGGCTCCATAGGCCGCAAGGATTCCTTTTCCTCGACCAACAG
CAATGACACCCCCCCACGCTTCAACAGCAATAGCAACAGCGGCAGCAACA
CCCCTTCCTCCCTCCATCCCTCCCGTTCGTCTTCCCTCCCTCCCTCACAA
GGCACCGAGGACGAGGATCTTGCCAGGGCCATCGCCCTCTCCATGCGTGA
AGCCACCCCAGGGGGAGGGAAGGAGGGAGGGAGGGAGGTAGACGAGGAGG
AGGAGGAAGAAGGAGGAAAAGTGAACGAAGGAGGGAGGGAGGGCGCGGCG
GCGGAGGAGGAGGAGGAGGAGATGGTGGTAAGAGACATAATACCGGTGCC
AGAGGAGCCGCCGGCCGGCACTTCTCCCTCCGCGATGGCCCATATTCAAT
TTCGTTTCCCCGATGGCAAGCGCGCCCGTCGGTATTTCTTTAAGACCGAG
CGCGTCAAGGGGTTATATGCCTACGTAGAGTCCATGAACCGCGAAGCTCT
TCGCAAAGTCGGTCCTCCCACCGGTTTGGGCGCCGAGCTCGCCGTCGCCA
CCCGAGACTACGAGCTGGTCATCCCACACCCGGCGCTAGCCCTCAATACG
GTGATGGATCAAACGCTGGAGGAAGCGGGACTCGACAATCAATCGATTAT
GATGAGGTTTTTGGATGGGTAG

protein sequence of NO22G01920.1

>NO22G01920.1-protein ID=NO22G01920.1-protein|Name=NO22G01920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MGAGDDPSLDWMFKVPEGLSCNAPFQEARGLAKAAQKWLLVNVQDFDNFA
SHRLNRDIWAHDTIHCLVDSGFLFWQRDKSTPEGQQFLSRYHIQPDALPV
IAIIDPRTGGKVREWMAATMKAMDLSTILADFLNQNSLDSLAAPRVQQRS
SSFGSIGRKDSFSSTNSNDTPPRFNSNSNSGSNTPSSLHPSRSSSLPPSQ
GTEDEDLARAIALSMREATPGGGKEGGREVDEEEEEEGGKVNEGGREGAA
AEEEEEEMVVRDIIPVPEEPPAGTSPSAMAHIQFRFPDGKRARRYFFKTE
RVKGLYAYVESMNREALRKVGPPTGLGAELAVATRDYELVIPHPALALNT
VMDQTLEEAGLDNQSIMMRFLDG*

mRNA from alignment at chr22:574391..576836-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO22G01920.1 ID=NO22G01920.1|Name=NO22G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2446bp|location=Sequence derived from alignment at chr22:574391..576836- (Nannochloropsis oceanica)
ATGGGAGCCGGTAAGGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGAAAAGGAAAATGGGAAGGGTCCTCGTTCATATTATCGAATGC
GTTTGTTAACATCCTTCTGTTCTTTTCCTCCCTCCCTCTCTAGGCGACGA
TCCCTCCCTGGACTGGATGTTCAAGGTGCCCGAAGGACTCTCGTGCAACG
CGCCCTTTCAAGAAGCTCGGGGCTTGGCCAAGGCGGTGAGCCTTCCCTCC
CTCCCTACCTCCCTACCTCCCTCCCTTCCGATCCTCCCTCTTTCACTCGG
CTCACTCACAAGTCCCTCCCTCGCTCCCACAGGCCCAAAAGTGGCTCCTG
GTGAATGTGCAAGACTTCGATAATTTCGCCTCCCATCGCCTCAATCGCGA
CATATGGGCCCACGACACGATCCACTGTCTCGTGGACTCCGGCTTCCTCT
TCTGGCAGGTACGTCCCTCCCCTCTCTTCCTTCCTCCCTTCCCTCCCTCC
CTCCCTTTACGCCTCTGCCTCCTGGACTCCGGCGTTCTATTCTGACAATC
ACATGCCCCCCCCTTCTTTCCCTCTCTTCCTCCCTCCCTTTACGCCGTTT
CTCCTGCTGGGCACTCATCTCCCTCCCACTCTCCCTCCCTCCCTCCGCCC
GTCCCTCCCCAGCGGGACAAGAGCACGCCAGAGGGACAGCAATTCCTTTC
CCGCTACCACATCCAGCCTGACGCCCTTCCCGTCATAGCCATCATTGATC
CCCGCACCGGAGGGAAGGTTCGGGAGTGGATGGCCGCCACCATGAAGGCC
ATGGACCTCTCCACCATCCGTATGTAGCCCTCCCTCCCTCCCTCCCTTCC
TCTCTCTCTCGTTGTTCTTTCCTGTCGTGCCCTCCCTTTTTCCTCCCTCC
ATCGTATCTTCTAAGCGCAACATGTATTTCTCGCCCTCTTCACCTCCTTC
CCTCCTCATCACAACCTCCTTCCCTCCTCATCATCACCCTCCTTCCCCCG
TCATCATCACCCTTCTTCCCTCCTCATCACCACCCTCCTTCCCTCCCTAT
CAGTGGCCGACTTCCTCAACCAGAACTCGCTGGACTCGCTGGCGGCCCCT
CGAGTCCAACAACGCTCCTCGTCTTTTGGCTCCATAGGTACGGGAGGAGG
GGAAGGAGAGAGGGAGGGAGAGAGGGAGGGAACGAGAAAGGGAGGAGAGA
GTACGTGCAGGGCATACTACTACTGCTCATTTATTGACTTGCCATCCCTC
CCTCCCTCTCTTCCTCTCTCCCTCCTTCCCTCCCTCCCTCCCTCCTCAGG
CCGCAAGGATTCCTTTTCCTCGACCAACAGCAATGACACCCCCCCACGCT
TCAACAGCAATAGCAACAGCGGCAGCAACACCCCTTCCTCCCTCCATCCC
TCCCGTTCGTCTTCCCTCCCTCCCTCACAAGGCACCGAGGACGAGGATCT
TGCCAGGGCCATCGCCCTCTCCATGCGTGAAGCCACCCCAGGGGGAGGGA
AGGAGGGAGGGAGGGAGGTAGACGAGGAGGAGGAGGAAGAAGGAGGAAAA
GTGAACGAAGGAGGGAGGGAGGGCGCGGCGGCGGAGGAGGAGGAGGAGGA
GATGGTGGTAAGAGACATAATACCGGTGCCAGAGGAGCCGCCGGGTGAGA
AGGGAGGGAGGGAGGATGGGAGGGAGGGCGGGAGAAAAGAGGGGAAGGGC
AGGCTATCATTATAATAATATGGCAAGATTGAAGATAATTCTGACCGACT
CCTCATCTCATCTTCCCTTTCCCCCTCCCTTCAGCCGGCACTTCTCCCTC
CGCGATGGCCCATATTCAATTTCGTTTCCCCGATGGCAAGCGCGCCCGTC
GGTATTTCTTTAAGACCGAGCGCGTCAAGGGGTTATATGCCTACGTAGAG
TCCATGGTACGCCCCCCCCCCCTCCCTCCCTCCCTCCCTCCCTTCCTCGG
CTCCATCCCTTTCGTCCCCCTTGAAACCATCTACACCTCTCTCTTCCCCC
TTCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCAA
GAACCGCGAAGCTCTTCGCAAAGTCGGTCCTCCCACCGGTTTGGGCGCCG
AGCTCGCCGTCGCCACCCGAGACTACGAGCTGGTCATCCCACACCCGGCG
CTAGGTGAGGAGGGAGGGAGGATGGCAGGGAGGGAGGGAGGGAGGATGAC
AGGGAGGATGGCAGGGAGGATGGCAGGGAGGGACGGACGGACGGACGGAC
GAAGAGACGGAGGGAGGATGGAGGGGAGAGGGGGAAGGCTGCTGTAGTGA
ATGTCTAGTCGCACGGTGCTCACCCTGTCCCCTTGCTCCTCCTCCTTCCC
TTCCACCTTCCAGCCCTCAATACGGTGATGGATCAAACGCTGGAGGAAGC
GGGACTCGACAATCAATCGATTATGATGAGGTTTTTGGATGGGTAG

Coding sequence (CDS) from alignment at chr22:574391..576836-

>NO22G01920.1 ID=NO22G01920.1|Name=NO22G01920.1|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at chr22:574391..576836- (Nannochloropsis oceanica)
ATGGGAGCCGGCGACGATCCCTCCCTGGACTGGATGTTCAAGGTGCCCGA
AGGACTCTCGTGCAACGCGCCCTTTCAAGAAGCTCGGGGCTTGGCCAAGG
CGGCCCAAAAGTGGCTCCTGGTGAATGTGCAAGACTTCGATAATTTCGCC
TCCCATCGCCTCAATCGCGACATATGGGCCCACGACACGATCCACTGTCT
CGTGGACTCCGGCTTCCTCTTCTGGCAGCGGGACAAGAGCACGCCAGAGG
GACAGCAATTCCTTTCCCGCTACCACATCCAGCCTGACGCCCTTCCCGTC
ATAGCCATCATTGATCCCCGCACCGGAGGGAAGGTTCGGGAGTGGATGGC
CGCCACCATGAAGGCCATGGACCTCTCCACCATCCTGGCCGACTTCCTCA
ACCAGAACTCGCTGGACTCGCTGGCGGCCCCTCGAGTCCAACAACGCTCC
TCGTCTTTTGGCTCCATAGGCCGCAAGGATTCCTTTTCCTCGACCAACAG
CAATGACACCCCCCCACGCTTCAACAGCAATAGCAACAGCGGCAGCAACA
CCCCTTCCTCCCTCCATCCCTCCCGTTCGTCTTCCCTCCCTCCCTCACAA
GGCACCGAGGACGAGGATCTTGCCAGGGCCATCGCCCTCTCCATGCGTGA
AGCCACCCCAGGGGGAGGGAAGGAGGGAGGGAGGGAGGTAGACGAGGAGG
AGGAGGAAGAAGGAGGAAAAGTGAACGAAGGAGGGAGGGAGGGCGCGGCG
GCGGAGGAGGAGGAGGAGGAGATGGTGGTAAGAGACATAATACCGGTGCC
AGAGGAGCCGCCGGCCGGCACTTCTCCCTCCGCGATGGCCCATATTCAAT
TTCGTTTCCCCGATGGCAAGCGCGCCCGTCGGTATTTCTTTAAGACCGAG
CGCGTCAAGGGGTTATATGCCTACGTAGAGTCCATGAACCGCGAAGCTCT
TCGCAAAGTCGGTCCTCCCACCGGTTTGGGCGCCGAGCTCGCCGTCGCCA
CCCGAGACTACGAGCTGGTCATCCCACACCCGGCGCTAGCCCTCAATACG
GTGATGGATCAAACGCTGGAGGAAGCGGGACTCGACAATCAATCGATTAT
GATGAGGTTTTTGGATGGGTAG

Synonyms

Publications