|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| chr22 | genome | chr22:544597..549028 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO22G01820.1 vs.
Match: CBN76890.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 793.5 bits (2048), Expect = 4.000e-226 Identity = 400/525 (76.19%), Postives = 458/525 (87.24%), Query Frame = 0
Query: 1 MSYAGVLNAGAEVDKGENARMSSFIGAIAIADLVKTTLGPKGMDKILQSVGSSDGAVTVTNDGATILKSVHIDNPAAKVLVDIAKTQDDEVGDGTTSVAVLCGELLREAEHLLSNQRVHPQTVALGWREATQLARKALEAMADDNANDPVAFRQDLVNIATTTLSSKLLCQEKAHFAELAVDAVLRLKGSANLEHIQITKKPGGSLKDSFLAEGFLLDKKIGVGQPKRMENAKILISNTSMDTDKIKIFGSRVRVDSMQKVAEIEEAEKQKMRNKCKKIVDHGINCFINRQLIYNYPEQLFTEAGIMSIEHADFEGVERLAAVTGGEIASTFDHPELVALGECDLIEEILIGEDKLIRFSGCKSGAACSVVLRGASAHLLDEAERSLHDALCVLSQTVRETRTIPGGGCAEVAMAQAIDAHVASTPGKKALAMESFARALRQLPTIIADNGGYDSSELITRLRAAHAAGKTTYGLDMANGGIADMKELGIREAFKSKLQVLVSAAEAAEMIIRVDDIIKCAPRER 526
M+ VLN A+VDKG+NAR+SSF+GAIAIADLVKTTLGPKGMDKILQS+GS DG ++VTNDGATIL+++H+DN AAKVLV+IAKTQDDEVGDGTTSV VLCGELLREAE L+ NQR+HPQT+ GWR AT AR+ L A+DN D FR DL +IA TTLSSKLL EK FAELAV+AVLRLKGS NL++IQI K PGGSLK+S+L EGF+L+KKIGVGQPK +ENAKILI+NT+MDTDKIKI+GSRVRVDSM KVAEIEEAEK KMR KCKKIVDHG+N F+NRQLIYN+PEQ+F EAG+M+IEHADFEGVERLAAVTGG ASTFDHPEL LGEC IEE++IGED LIRFSGCK+G AC++VLRGAS H+LDEAERSLHDALCVL+QTV+ETRT+PGGGC E+AMA AIDA V +T GKKALAME++ARALRQLPTIIADNGGYD S+LI+ LRAAHA G T GLDM G + DMK LG+REA+KSKLQVL+SAAEAAEM++RVDDIIKCAPR+R
Sbjct: 1 MATEAVLNDNAQVDKGDNARLSSFVGAIAIADLVKTTLGPKGMDKILQSMGSRDGGISVTNDGATILRAIHVDNAAAKVLVNIAKTQDDEVGDGTTSVTVLCGELLREAEKLV-NQRLHPQTIIQGWRLATAAARRVLADSAEDNGKDDAKFRDDLYHIAKTTLSSKLLTHEKDRFAELAVNAVLRLKGSGNLDYIQIIKMPGGSLKESYLEEGFILNKKIGVGQPKVVENAKILIANTAMDTDKIKIYGSRVRVDSMNKVAEIEEAEKDKMRKKCKKIVDHGVNVFVNRQLIYNFPEQIFAEAGVMAIEHADFEGVERLAAVTGGATASTFDHPELAVLGECKKIEEVMIGEDTLIRFSGCKAGEACTIVLRGASKHVLDEAERSLHDALCVLTQTVKETRTVPGGGCTEIAMAAAIDAEVPNTSGKKALAMEAYARALRQLPTIIADNGGYDGSDLISSLRAAHAQGAKTAGLDMQQGVVGDMKALGVREAYKSKLQVLISAAEAAEMVLRVDDIIKCAPRQR 524
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO22G01820.1 ID=NO22G01820.1|Name=NO22G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1711bp ACAGCAAAGGATCATGTCGTACGCAGGGGTGCTAAATGCCGGCGCCGAGG TGGATAAGGGTGAGAATGCCCGGATGTCCTCCTTCATTGGCGCGATCGCT ATTGCTGACCTGGTCAAGACCACGCTGGGGCCGAAAGGGATGGATAAAAT CCTCCAGTCGGTCGGGTCGTCGGATGGGGCAGTGACGGTGACCAACGACG GGGCTACGATCCTCAAATCCGTGCATATCGATAACCCCGCAGCCAAAGTC CTCGTTGACATCGCCAAGACCCAAGACGATGAGGTGGGAGACGGGACTAC GAGCGTAGCCGTGCTCTGTGGAGAGCTCCTGCGCGAGGCCGAGCACCTGC TCAGCAACCAGCGCGTGCATCCCCAGACAGTGGCCTTGGGCTGGAGGGAA GCTACCCAGCTTGCCCGGAAAGCACTGGAGGCCATGGCCGATGACAATGC CAACGACCCCGTGGCGTTTCGACAGGATTTGGTTAACATCGCCACCACCA CCCTCTCCTCGAAGCTCCTCTGTCAAGAAAAAGCTCACTTCGCCGAGCTG GCCGTCGATGCTGTCTTACGTCTCAAGGGCAGTGCTAATTTGGAGCACAT CCAGATCACCAAGAAACCAGGCGGTTCCCTCAAGGATTCTTTCCTCGCCG AAGGTTTCCTCCTCGACAAGAAAATCGGGGTCGGTCAGCCGAAGCGGATG GAGAACGCCAAGATCCTCATATCCAACACCAGCATGGACACGGATAAGAT CAAAATTTTTGGGTCTCGCGTCCGCGTTGACTCCATGCAGAAAGTGGCAG AGATCGAGGAGGCTGAGAAGCAGAAGATGCGGAACAAGTGCAAGAAGATC GTCGACCACGGGATCAACTGCTTCATTAACCGACAGCTCATTTATAACTA TCCCGAGCAGCTTTTTACCGAGGCAGGGATCATGTCCATCGAGCACGCCG ACTTCGAAGGCGTGGAGCGCCTCGCCGCCGTGACAGGAGGAGAAATCGCG TCGACTTTCGACCATCCAGAACTCGTGGCTCTGGGGGAATGCGACCTGAT CGAAGAGATCTTGATCGGGGAGGACAAGCTCATTCGTTTCTCCGGATGCA AGAGTGGGGCGGCCTGTTCCGTCGTCCTCCGCGGGGCCTCGGCCCATCTA CTCGACGAGGCAGAGCGGTCACTGCACGATGCCCTGTGTGTCTTATCGCA GACAGTGAGGGAGACGAGGACCATCCCCGGGGGGGGGTGTGCGGAGGTGG CGATGGCACAGGCAATTGACGCTCATGTGGCGTCCACACCGGGGAAAAAG GCGCTGGCCATGGAATCATTCGCAAGAGCCTTACGCCAGCTCCCCACCAT TATCGCTGACAACGGCGGATATGACTCCTCCGAGCTCATCACGCGGCTTC GAGCAGCGCACGCAGCAGGGAAGACCACATATGGCTTGGACATGGCCAAC GGAGGGATCGCAGACATGAAGGAGCTGGGCATCCGCGAAGCTTTCAAAAG CAAGCTTCAGGTGTTGGTGTCCGCAGCAGAGGCCGCTGAGATGATCATTC GCGTGGATGACATCATTAAGTGTGCGCCGCGGGAGAGGGGCTAGAGGGAA GGGAGGCAGGGAAGGAGGGAGGGAGAGTAATAAGAAGGAAAGAGAAATCT GGCACAACGACCCAGGTGACCAGCTCCCGCAGAAAAAGGAAAAAAAGCAA CCATTTATACG back to topprotein sequence of NO22G01820.1 >NO22G01820.1-protein ID=NO22G01820.1-protein|Name=NO22G01820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=527bp MSYAGVLNAGAEVDKGENARMSSFIGAIAIADLVKTTLGPKGMDKILQSV GSSDGAVTVTNDGATILKSVHIDNPAAKVLVDIAKTQDDEVGDGTTSVAV LCGELLREAEHLLSNQRVHPQTVALGWREATQLARKALEAMADDNANDPV AFRQDLVNIATTTLSSKLLCQEKAHFAELAVDAVLRLKGSANLEHIQITK KPGGSLKDSFLAEGFLLDKKIGVGQPKRMENAKILISNTSMDTDKIKIFG SRVRVDSMQKVAEIEEAEKQKMRNKCKKIVDHGINCFINRQLIYNYPEQL FTEAGIMSIEHADFEGVERLAAVTGGEIASTFDHPELVALGECDLIEEIL IGEDKLIRFSGCKSGAACSVVLRGASAHLLDEAERSLHDALCVLSQTVRE TRTIPGGGCAEVAMAQAIDAHVASTPGKKALAMESFARALRQLPTIIADN GGYDSSELITRLRAAHAAGKTTYGLDMANGGIADMKELGIREAFKSKLQV LVSAAEAAEMIIRVDDIIKCAPRERG* back to topmRNA from alignment at chr22:544597..549028+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO22G01820.1 ID=NO22G01820.1|Name=NO22G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=4432bp|location=Sequence derived from alignment at chr22:544597..549028+ (Nannochloropsis oceanica) ACAGCAAAGGATCATGTCGTACGCAGGGGTGCTAAATGCCGGCGCCGAGG
TGGATAAGGTACGCTGTCCGGGTCTCCATCTATCTTATTCCCTCCTCTTC
ATCATCATCACCGTCATTATCGCCTCCCCAAACCTCGCCCAGACTTTGTT
CTATGCGCACTTCGGGAGGGCTTAGGGATGAGGTCATGGATTGAGGAAGA
GCACCACGCTCTAGTGGTTGGGCTAGTTATCGCATAGCAACCCGGAGTGG
TCTGCTTGCCTGCCGGAAAGAAAGCAGCCACCACGCCTTATTCATGCCGG
CGCCTCACGTGTATTCCCTCCCCCTCCCTATACCATCCACAGGGTGAGAA
TGCCCGGATGTCCTCCTTCATTGGCGCGATCGCTATTGCTGACCTGGTCA
AGACCACGCTGGGGCCGAAAGGGATGGATAAAATCCTCCAGTCGGTCGGG
TCGTCGGATGGGGCAGTGACGGTATGGAGGAAGGGAGGGTAGGAGGGGGA
GAGGGACGGAAGGAGGTTGCCGCGAGTAAATATGACATTGATTGAGTGGG
TTAGGACGCTACAGGGCAAGAAAAATAGTGTGAACACATCCTGTTTGTTT
GGTGGTGGCTTCTCCACGCACATAATCACTCATGGCTACTCTCCCTCACT
TCCTCCCTCCCTCTCTCCCTCTTTCCTTCCCACCTTCCCACCTTCCCTCC
CTCCTATCAGGTGACCAACGACGGGGCTACGATCCTCAAATCCGTGCATA
TCGATAACCCCGCAGCCAAAGTCCTCGTTGACATCGCCAAGACCCAAGAC
GATGAGGTGGGAGACGGGACTACGAGCGTAGCCGTGCTCTGTGGAGAGCT
CCTGCGCGAGGTACGTCTGTCCCCCCCCCTTTCCTCCCTCGCTCCCTCGC
CCTCTCCCTCGCCCCCTCCCACACACTCACTTCTTGCTTCCCCCTTCCCT
CTCGTCAGGCCGAGCACCTGCTCAGCAACCAGCGCGTGCATCCCCAGACA
GTGGCCTTGGGCTGGAGGGAAGCTACCCAGCTTGCCCGGAAAGCACTGGA
GGCCATGGCCGATGACAATGCCAACGACCCCGTGGCGTTTCGACAGGATT
TGGTGAGGAGGAAGGAGGGAAGGGAGGGAGGGAGGGAAGGGGGTATGAGG
GAAAGCATACCCACCCACACAGTTACGGAGGCGTTGAATTTTCAGTTCTC
TCCTCCCCTCCCTCCCTCCCCTCCTCCCTTCCTCGAATTCGAATTCGTCA
CCATCACTCTCTCCATTTGCCCGTAGACATCAATCCACTCATTTCCTTCC
TCCCTCCCTCCCTCCCTCCCTTCCTCCAGGTTAACATCGCCACCACCACC
CTCTCCTCGAAGCTCCTCTGTCAAGAAAAAGCTCACTTCGCCGAGCTGGC
CGTCGATGCTGTCTTACGGTATGCCCCTCTCTCCCTCCCTCCTTCCCTCC
CTCCCTTCCCCCCTCTCTCCCCTCCTCTTTTCCAATTTCTTCTGGCTTCA
AGATTCTTATCATCTCCTCCCCTCCCTCCCTCCCTCCCTCCCTTTTTTTC
TCCCTCGCAGTCTCAAGGGCAGTGCTAATTTGGAGCACATCCAGGTAAGT
CCAAGAAGAGGCGGAAGGATATATACTCCCCGCTACACCCACCCCTCCCT
CCCTCCCTCTCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCTCTCAGATCACCAAGAAACCAGGCGGTTCCC
TCAAGGATTCTTTCCTCGCCGAAGGTTTCCTCCTCGACAAGAAAATCGGG
GTCGGTCAGCCGAAGCGGATGGAGAACGTACGCAAGCCTCCCTCCCTCCC
TCCCTCCCTCCCTAACTTCCCCCCTCTTTCCCTCCCTCTCTCCTTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCAGCCAGGAACCCCTTATCAGCCCCAG
CTCAGGCACAGCCATTAAACTAACTCCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCCAGGCCAAGATCCTCATATCCAACACCAGCATGGACACGGA
TAAGATCAAAATTTTTGGGTCTCGCGTCCGCGTTGACTCCATGCAGAAAG
TGGCAGAGGTACGCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTTCCTCCCTTC
TTATTTTTTACCTCCCCCCTCCTTCCCTCCCGCCGTCCATCCCTCGCCCT
AGATCGAGGAGGCTGAGAAGCAGAAGATGCGGAACAAGTGCAAGAAGATC
GTCGACCACGGGATCAACTGCTTCATTAACCGACAGGTGCGTGCCTTCCC
TCCATCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCTTTCCCTCCCTCCCTCCCTCTTGCATCCAT
CCCTCCTCCTGCTCGGGGCCTACGGTATTTACAGCTGCATAACATCAAGG
AACAGCCACACACCTTCCCTCTCTCCCTCCTTCCCTTCCTCCCCACGATT
CGTCTTCTCTTTTCCTCATTGTTTACACCCACCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCAGCTCATTTATAACTATCCCGAGC
AGCTTTTTACCGAGGCAGGGATCATGTCCATCGAGCACGCCGACTTCGAA
GGTACTGGACCCCTCCCTCCCTCCCTCCCTCCCTCCCTATGTTCACCCAT
ATCACACACCAGGTCTCATCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCT
CCCTTAAGGCGTGGAGCGCCTCGCCGCCGTGACAGGAGGAGAAATCGCGT
CGACTTTCGACCATCCAGAACTCGTGGCTCTGGGGGAATGCGACCTGATC
GAAGGTAGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
TCATGGCACAAGAAAGACGAGCCGGGCCGCCAGCTCGGAGGTTGAGTCTG
TGGTATCGGGCTCTCACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCCATCATCAGAGATCTTGATCGGGGAGGACAAGCTCATTCG
TTTCTCCGGATGCAAGAGTGGGGCGGCCTGTTCCGTCGTCCTCCGCGGGG
CCTCGGCCCATCTACTCGACGAGGCAGAGCGGTCACTGCACGATGCCCTG
TGTGTCTTATCGCAGACAGTGAGGGAGACGAGGACCATCCCCGGGGGGGG
GTGTGCGGAGGTGGCGATGGCACAGGTAGGGAGGGAGGGAGGGAGGGAGG
GAGGGTAAATTGGGTGGAGAGGGCGCAAAAGCAGGCGTTAACGTAAGCGA
TGGGACATGGAGGGAGGGAGGGAGAAGGGGAGGGAGGGAGATTCACACAT
GAAGTCTACCTCCAGGCACGCTGACATTTTCTTCCTTCTTCCGCCCTTTC
CCTTCCCCCCTCTCCCCTCCCTCCCTCCCCTCCTCCCTCCCTGCTCGTCT
CATTCTAGGCAATTGACGCTCATGTGGCGTCCACACCGGGGAAAAAGGCG
CTGGCCATGGAATCATTCGCAAGAGCCTTACGCCAGGTGCCTCCCTCCCT
CCCTCAGTACCTCCGTCCGTTCCTCTGTGCCTCCCTCCCTCCCTTCCTTC
CTTCCATCCATCTTGCCTTCATCCATTCCTTTCTCCGTTTCTTGTCTTCG
AAGTCATTCAGGTTGCTCCTCGCTGTGAACTAGAATCGTCGCAAAGTAAG
ACTCACATCTCTCCCTCATCTCCTCTCTTCCCTCCTTTCCTCCCTCCCTC
CCTCCCTCCCTCCCTCAGCTCCCCACCATTATCGCTGACAACGGCGGATA
TGACTCCTCCGAGCTCATCACGCGGCTTCGAGCAGCGCACGCAGCAGGGA
AGACCACATATGGCTTGGACATGGCCAACGGAGGGATCGCAGTAAGTACC
TCCCCCCCCCCCCTTTCCTCCACCATCTTCTCCTTTCCTCCCTCTGCTGT
CGCTGTGTCTGGCTCACTGAGACTGCCAACATTAAATCGCTGCGGACATG
AAATCCACCTCCGATTCTTGCCGACACGCCCTTCCTCACGACTTCCTCCT
TTCCTCCCCTTAATCCCTCTCTCCCTTCCTCAGGACATGAAGGAGCTGGG
CATCCGCGAAGCTTTCAAAAGCAAGCTTCAGGTGTTGGTGTCCGCAGCAG
AGGCCGCTGAGATGATCATTCGCGTGGATGACATCATTAAGTGTGCGCCG
CGGGAGAGGGGCTAGAGGGAAGGGAGGCAGGGAAGGAGGGAGGGAGAGTA
ATAAGAAGGAAAGAGAAATCTGGCACAACGACCCAGGTGACCAGCTCCCG
CAGAAAAAGGAAAAAAAGCAACCATTTATACG back to topCoding sequence (CDS) from alignment at chr22:544597..549028+ >NO22G01820.1 ID=NO22G01820.1|Name=NO22G01820.1|organism=Nannochloropsis oceanica|type=CDS|length=1581bp|location=Sequence derived from alignment at chr22:544597..549028+ (Nannochloropsis oceanica) ATGTCGTACGCAGGGGTGCTAAATGCCGGCGCCGAGGTGGATAAGGGTGA GAATGCCCGGATGTCCTCCTTCATTGGCGCGATCGCTATTGCTGACCTGG TCAAGACCACGCTGGGGCCGAAAGGGATGGATAAAATCCTCCAGTCGGTC GGGTCGTCGGATGGGGCAGTGACGGTGACCAACGACGGGGCTACGATCCT CAAATCCGTGCATATCGATAACCCCGCAGCCAAAGTCCTCGTTGACATCG CCAAGACCCAAGACGATGAGGTGGGAGACGGGACTACGAGCGTAGCCGTG CTCTGTGGAGAGCTCCTGCGCGAGGCCGAGCACCTGCTCAGCAACCAGCG CGTGCATCCCCAGACAGTGGCCTTGGGCTGGAGGGAAGCTACCCAGCTTG CCCGGAAAGCACTGGAGGCCATGGCCGATGACAATGCCAACGACCCCGTG GCGTTTCGACAGGATTTGGTTAACATCGCCACCACCACCCTCTCCTCGAA GCTCCTCTGTCAAGAAAAAGCTCACTTCGCCGAGCTGGCCGTCGATGCTG TCTTACGTCTCAAGGGCAGTGCTAATTTGGAGCACATCCAGATCACCAAG AAACCAGGCGGTTCCCTCAAGGATTCTTTCCTCGCCGAAGGTTTCCTCCT CGACAAGAAAATCGGGGTCGGTCAGCCGAAGCGGATGGAGAACGCCAAGA TCCTCATATCCAACACCAGCATGGACACGGATAAGATCAAAATTTTTGGG TCTCGCGTCCGCGTTGACTCCATGCAGAAAGTGGCAGAGATCGAGGAGGC TGAGAAGCAGAAGATGCGGAACAAGTGCAAGAAGATCGTCGACCACGGGA TCAACTGCTTCATTAACCGACAGCTCATTTATAACTATCCCGAGCAGCTT TTTACCGAGGCAGGGATCATGTCCATCGAGCACGCCGACTTCGAAGGCGT GGAGCGCCTCGCCGCCGTGACAGGAGGAGAAATCGCGTCGACTTTCGACC ATCCAGAACTCGTGGCTCTGGGGGAATGCGACCTGATCGAAGAGATCTTG ATCGGGGAGGACAAGCTCATTCGTTTCTCCGGATGCAAGAGTGGGGCGGC CTGTTCCGTCGTCCTCCGCGGGGCCTCGGCCCATCTACTCGACGAGGCAG AGCGGTCACTGCACGATGCCCTGTGTGTCTTATCGCAGACAGTGAGGGAG ACGAGGACCATCCCCGGGGGGGGGTGTGCGGAGGTGGCGATGGCACAGGC AATTGACGCTCATGTGGCGTCCACACCGGGGAAAAAGGCGCTGGCCATGG AATCATTCGCAAGAGCCTTACGCCAGCTCCCCACCATTATCGCTGACAAC GGCGGATATGACTCCTCCGAGCTCATCACGCGGCTTCGAGCAGCGCACGC AGCAGGGAAGACCACATATGGCTTGGACATGGCCAACGGAGGGATCGCAG ACATGAAGGAGCTGGGCATCCGCGAAGCTTTCAAAAGCAAGCTTCAGGTG TTGGTGTCCGCAGCAGAGGCCGCTGAGATGATCATTCGCGTGGATGACAT CATTAAGTGTGCGCCGCGGGAGAGGGGCTAG back to top
|