NO22G01740.1, NO22G01740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01740.1
Unique NameNO22G01740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2345
Alignment locationchr22:500123..502885 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:500123..502885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G01740.1 vs.
Match: CCA14249.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 152.5 bits (384), Expect = 4.000e-33
Identity = 100/303 (33.00%), Postives = 153/303 (50.50%), Query Frame = 0 
Query:  263 GVCWAPKHNMTNP----------SVEILEDALLIRRHFRQVRTFYSSYYSLPVLPLFVRAGIKVVLGVFMYPEEPSWTEAEKQTAIQSAIAYPEETLAIYVGNENVYPYKNFTVDMLVKHMRDVREGVREGLLLKAKEGGWEGSKIPPVGTVQRLTEWMIEG--KEMDRLAESSDLIGVNLYPYFSVDG------EDLETQWAKMVKRYPKHAHKIRMTETGWPSAGNPNFA--NFTASHDQARDFYSTYLKWACKQSKPEGGKEGWVSPAATAVKETFYYAYFDGRAP--SVAPDYEAHFGL 544
            GVC++P HN   P           V + ED   ++++F  VRT+YS YY  P+ P+    GI++ LG+++  E+  W + + + A+Q+ I YP+    I VGNENV PY  +    +   ++ +R  V E            GS++  +GTVQR  EWM E    +M  LAE  D++GVN+Y +F  +       E L + W+KM + YP    K+R+TE GWP+AG+P+    +   S   +  FYS +L W      P  G            KE F++ +FD R+   ++  D E  FGL
Sbjct:   94 GVCYSPMHNPQYPLNGQHSADGLDVAMNEDFNTMKKYFGYVRTYYSQYYQFPIAPIAAAHGIRLFLGIYVTDED--WYKDQVEAAVQAVIKYPDTVACILVGNENVAPYGPYRPMDIGSRIKALRSEVAERA---------PGSRV-QIGTVQRSAEWMDENIRSDMLALAELCDIVGVNIYTFFDKNNKSPGSLEQLNSAWSKMSEIYP--PSKLRLTEIGWPTAGSPSVVAPDNIPSLGNSVTFYSNFLNW----KPPLPG------------KEAFWFMFFDRRSDDNTMNVDLEKFFGL 366
The following BLAST results are available for this feature:
BLAST of NO22G01740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CCA14249.14.000e-3333.00conserved hypothetical protein [Albugo laibachii N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01740NO22G01740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01740.1NO22G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01740.1.cds1NO22G01740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01740.1.cds2NO22G01740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01740.1.cds3NO22G01740.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01740.1 ID=NO22G01740.1|Name=NO22G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2345bp
CTAATTTATCCCTACTGCTCCGTGCTAATCTGAATTTAACATTGTCTCCC
CTTTAATTTTTTTACAGGAACCTGTCCTGAGAGACGTGCACGACATTCCC
ACAATTCCAAATCCCCTTCCACCCTCATAACGCCACCAAGTATGGCAAGT
GACGAATCCAAAAAAGTACAGTGGTCACCCCGTCCCCGCCTCCTTGCCCC
CACATTTCTCCTTGCCACCACCTTTCAAAGGGACAGCAGTACCAACGGCA
GCAGCCCAGCCCGTGGTGCTGAAGATTCTCCCACCCTCTCTCAACAAATT
ACCCCATCGGCTTCGCAGCCTTCGCAACAGCAGCAGCAGCAGCAGCCGGC
AAATGAGGGCACGCCCTTGATTGGAAGTTATGATAGCATTGGGTCTCCGT
TTCGACAAGGAATATGGTCGACCTGGGGGTTGAGCGCTGGAGTTGGCAAT
GTAGAGAGTCCTGGTAGTAATAATGGTATGAGCAGTATGGGAAACGTGGA
GGCGGGCTTGTCAGGGATTACCTCGCCCAGTAGCCTGGAGGACAGACGTT
CTCGCTCTCCTCTCTCCTCCGTCATGCTTTTTCTTAGCATCCTCTTCTTC
GCCTCTTCCTGCGGTGTCATAGCCCTCGCCACCTTCTCCACCTCCTCCTC
CTCTGCCTCCTCCTCTGCCTCCTCTTCCTCCTCCTCATCCTCTCTTTCCC
CCTTCTCCTCTTCTACAACACATGAGATGGTCACTTTTGCTGCAGAAAAT
ACCCTTTCTATGACCCTACCACACCTCCCCCCCTCCCCCTCCTCCTTCCA
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCATCCCGGCCCCCA
GCCCTTCATCCTCCCTCGCCTCCCTTCATACCTCTCCTCCTACCCTCTTT
CCCGTCCTGCCCCAGTCCCTTGCTCTGGGTGTTTGTTGGGCTCCCAAACA
CAACATGACCAATCCCAGCGTCGAAATCCTTGAAGACGCCCTCCTGATCC
GACGTCACTTTCGGCAAGTCCGTACGTTCTATTCGTCCTACTACTCCTTG
CCCGTCCTCCCTCTCTTCGTTCGGGCAGGGATCAAGGTGGTGCTAGGGGT
ATTCATGTACCCAGAAGAACCCTCGTGGACCGAAGCGGAGAAGCAGACGG
CGATACAGAGTGCGATTGCCTACCCGGAAGAGACTCTCGCCATCTACGTG
GGGAATGAGAATGTGTATCCCTATAAAAACTTTACGGTCGACATGTTGGT
CAAGCATATGAGGGATGTCAGGGAAGGGGTGAGGGAGGGTTTGTTGCTGA
AGGCCAAGGAGGGAGGATGGGAGGGAAGCAAGATCCCGCCTGTGGGGACG
GTGCAGAGGTTGACTGAATGGATGATAGAGGGGAAGGAGATGGATCGGCT
TGCGGAAAGTTCGGATCTAATTGGGGTAAATTTATATCCGTATTTCAGCG
TTGATGGAGAGGACCTGGAGACACAGTGGGCCAAAATGGTGAAGCGCTAT
CCGAAGCACGCGCACAAAATACGAATGACCGAAACGGGCTGGCCCAGCGC
AGGGAACCCTAATTTCGCGAATTTTACGGCTAGCCACGACCAAGCCCGAG
ACTTCTATAGCACTTACTTGAAATGGGCTTGTAAGCAGTCAAAACCGGAG
GGAGGGAAAGAGGGATGGGTGAGCCCTGCAGCAACAGCCGTAAAAGAGAC
GTTTTATTACGCTTATTTTGATGGGAGGGCTCCGAGCGTCGCCCCTGATT
ACGAGGCTCACTTCGGGTTGGTGAGCGAAAGTGACAACACACCCAAATTT
CCTTTGGCAGAAGGTGGGCTGTGTCCGACTAAAATGAAGGAACAAGGAAT
GAAGGACGAGACAGAGAGAGGGGTGGAAGGAGGGATAGAGGACGACATGA
AAGAGTAGATGTGAGGGATTTGCGCTGTTATTGGGCGTTGTTATAATAAA
TAGGGACAAGAGGGAGAAAGGCGCCGAGAAAGAAGAGGACAAGTGAGAAA
GAGAAGGAGGAGGATGAAAAGGTGGACAATTAGGAAATGGAGGGGAACGG
GGAGGAGAAGCAGCTGCGTTATGAGAAACAGGAAGAGGAGGAAAACAAGG
AGGAAATCGTAAAGATTCCAGCTTGATAGATTGCGCTTGTGTATGAGATT
ACTTGTTGAAGCGTCAATTCGATTTCTTAATTTTGTATGAAGGGTAATTT
AAAAAATGGATAGGTGAGGGGGGGGTTAGGGGCTGCGTCGCTGCATCAAT
TGCTTGCGCGTTTGCTTTGAAGTTATGGAACGATGTCTACAAACAGATGA
AAAATGCGAACAGATGAAAAATGCGAAGGCCTGCAGGAGAGTCAA
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protein sequence of NO22G01740.1

>NO22G01740.1-protein ID=NO22G01740.1-protein|Name=NO22G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=589bp
MASDESKKVQWSPRPRLLAPTFLLATTFQRDSSTNGSSPARGAEDSPTLS
QQITPSASQPSQQQQQQQPANEGTPLIGSYDSIGSPFRQGIWSTWGLSAG
VGNVESPGSNNGMSSMGNVEAGLSGITSPSSLEDRRSRSPLSSVMLFLSI
LFFASSCGVIALATFSTSSSSASSSASSSSSSSSLSPFSSSTTHEMVTFA
AENTLSMTLPHLPPSPSSFHSSSSSSSSSSSSIPAPSPSSSLASLHTSPP
TLFPVLPQSLALGVCWAPKHNMTNPSVEILEDALLIRRHFRQVRTFYSSY
YSLPVLPLFVRAGIKVVLGVFMYPEEPSWTEAEKQTAIQSAIAYPEETLA
IYVGNENVYPYKNFTVDMLVKHMRDVREGVREGLLLKAKEGGWEGSKIPP
VGTVQRLTEWMIEGKEMDRLAESSDLIGVNLYPYFSVDGEDLETQWAKMV
KRYPKHAHKIRMTETGWPSAGNPNFANFTASHDQARDFYSTYLKWACKQS
KPEGGKEGWVSPAATAVKETFYYAYFDGRAPSVAPDYEAHFGLVSESDNT
PKFPLAEGGLCPTKMKEQGMKDETERGVEGGIEDDMKE*
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mRNA from alignment at chr22:500123..502885+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01740.1 ID=NO22G01740.1|Name=NO22G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2763bp|location=Sequence derived from alignment at chr22:500123..502885+ (Nannochloropsis oceanica)
CTAATTTATCCCTACTGCTCCGTGCTAATCTGAATTTAACATTGTCTCCC
CTTTAATTTTTTTACAGGAACCTGTCCTGAGAGACGTGCACGACATTCCC
ACAATTCCAAATCCCCTTCCACCCTCATAACGCCACCAAGTATGGCAAGT
GACGAATCCAAAAAAGTACAGTGGTCACCCCGTCCCCGCCTCCTTGCCCC
CACATTTCTCCTTGCCACCACCTTTCAAAGGGACAGCAGTACCAACGGCA
GCAGCCCAGCCCGTGGTGCTGAAGATTCTCCCACCCTCTCTCAACAAATT
ACCCCATCGGCTTCGCAGCCTTCGCAACAGCAGCAGCAGCAGCAGCCGGC
AAATGAGGGCACGCCCTTGATTGGAAGTTATGATAGCATTGGGTCTCCGT
TTCGACAAGGAATATGGTCGACCTGGGGGTTGAGCGCTGGAGTTGGCAAT
GTAGAGAGTCCTGGTAGTAATAATGGTATGAGCAGTATGGGAAACGTGGA
GGCGGGCTTGTCAGGGATTACCTCGCCCAGTAGCCTGGAGGACAGACGTA
CGTATTTTGTGTGGATTAATGGATGGGTCTGGGGTCTGATAATGGTTTTG
CGTATGTGTGTGTAAAGAATTTGAAGTGGCGAGGTACGCAAGTTTTGCTT
CTTCCGCATCTATGCGTTTCCCCCCCATTTCACTCCCAGCCTTTAATTAC
TCACCTTAATCACCGCGTTCATTACTATCATTCTTATATTTGTTTTGTTA
TACATATTCATCTACTCTTATATACAGGTTCTCGCTCTCCTCTCTCCTCC
GTCATGCTTTTTCTTAGCATCCTCTTCTTCGCCTCTTCCTGCGGTGTCAT
AGCCCTCGCCACCTTCTCCACCTCCTCCTCCTCTGCCTCCTCCTCTGCCT
CCTCTTCCTCCTCCTCATCCTCTCTTTCCCCCTTCTCCTCTTCTACAACA
CATGAGATGGTCACTTTTGCTGCAGAAAATACCCTTTCTATGACCCTACC
ACACCTCCCCCCCTCCCCCTCCTCCTTCCACTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCATCCCGGCCCCCAGCCCTTCATCCTCCCTCGCC
TCCCTTCATACCTCTCCTCCTACCCTCTTTCCCGTCCTGCCCCAGTCCCT
TGCTCTGGGTGTTTGTTGGGCTCCCAAACACAACATGACCAATCCCAGCG
TCGAAATCCTTGAAGACGCCCTCCTGATCCGACGTCACTTTCGGCAAGTC
CGTACGTTCTATTCGTCCTACTACTCCTTGCCCGTCCTCCCTCTCTTCGT
TCGGGCAGGGATCAAGGTGGTGCTAGGGGTATTCATGTACCCAGAAGAAC
CCTCGTGGACCGAAGCGGAGAAGCAGACGGCGATACAGAGTGCGATTGCC
TACCCGGAAGAGACTCTCGCCATCTACGTGGGGAATGAGAATGTGTATCC
CTATAAAAACTTTACGGTCGACATGTTGGTCAAGCATATGAGGGATGTCA
GGGAAGGGGTGAGGGAGGGTTTGTTGCTGAAGGCCAAGGAGGGAGGATGG
GAGGGAAGCAAGATCCCGCCTGTGGGGACGGTGCAGAGGTTGACTGAATG
GATGATAGAGGGGAAGGAGATGGATCGGCTTGCGGAAAGTTCGGATCTAA
TTGGGGTAAATTTATATCCGTATTTCAGCGTTGATGGAGAGGACCTGGAG
ACACAGTGGGCCAAAATGGTGAAGCGCTATCCGAAGCACGCGCACAAAAT
ACGAATGACCGAAACGGGCTGGCCCAGCGCAGGTACGACCCCTCTCCTAC
TCCTTCCCTCCCTACCTCCCTCCCTCCCTCCCCGCATTTCGCGTCGACTT
ATAACTGAGCGGAATGCTACGTGCACACACTTCCCCCTCTCTCCCTTCCC
TCCCTCGATTCCTTCTGAAAGCTTCTAATGTTTCCCTCCCTCTCCCTCCC
TCCTCCCTCCCTCCCTCCAGGGAACCCTAATTTCGCGAATTTTACGGCTA
GCCACGACCAAGCCCGAGACTTCTATAGCACTTACTTGAAATGGGCTTGT
AAGCAGTCAAAACCGGAGGGAGGGAAAGAGGGATGGGTGAGCCCTGCAGC
AACAGCCGTAAAAGAGACGTTTTATTACGCTTATTTTGATGGGAGGGCTC
CGAGCGTCGCCCCTGATTACGAGGCTCACTTCGGGTTGGTGAGCGAAAGT
GACAACACACCCAAATTTCCTTTGGCAGAAGGTGGGCTGTGTCCGACTAA
AATGAAGGAACAAGGAATGAAGGACGAGACAGAGAGAGGGGTGGAAGGAG
GGATAGAGGACGACATGAAAGAGTAGATGTGAGGGATTTGCGCTGTTATT
GGGCGTTGTTATAATAAATAGGGACAAGAGGGAGAAAGGCGCCGAGAAAG
AAGAGGACAAGTGAGAAAGAGAAGGAGGAGGATGAAAAGGTGGACAATTA
GGAAATGGAGGGGAACGGGGAGGAGAAGCAGCTGCGTTATGAGAAACAGG
AAGAGGAGGAAAACAAGGAGGAAATCGTAAAGATTCCAGCTTGATAGATT
GCGCTTGTGTATGAGATTACTTGTTGAAGCGTCAATTCGATTTCTTAATT
TTGTATGAAGGGTAATTTAAAAAATGGATAGGTGAGGGGGGGGTTAGGGG
CTGCGTCGCTGCATCAATTGCTTGCGCGTTTGCTTTGAAGTTATGGAACG
ATGTCTACAAACAGATGAAAAATGCGAACAGATGAAAAATGCGAAGGCCT
GCAGGAGAGTCAA
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Coding sequence (CDS) from alignment at chr22:500123..502885+

>NO22G01740.1 ID=NO22G01740.1|Name=NO22G01740.1|organism=Nannochloropsis oceanica|type=CDS|length=1767bp|location=Sequence derived from alignment at chr22:500123..502885+ (Nannochloropsis oceanica)
ATGGCAAGTGACGAATCCAAAAAAGTACAGTGGTCACCCCGTCCCCGCCT
CCTTGCCCCCACATTTCTCCTTGCCACCACCTTTCAAAGGGACAGCAGTA
CCAACGGCAGCAGCCCAGCCCGTGGTGCTGAAGATTCTCCCACCCTCTCT
CAACAAATTACCCCATCGGCTTCGCAGCCTTCGCAACAGCAGCAGCAGCA
GCAGCCGGCAAATGAGGGCACGCCCTTGATTGGAAGTTATGATAGCATTG
GGTCTCCGTTTCGACAAGGAATATGGTCGACCTGGGGGTTGAGCGCTGGA
GTTGGCAATGTAGAGAGTCCTGGTAGTAATAATGGTATGAGCAGTATGGG
AAACGTGGAGGCGGGCTTGTCAGGGATTACCTCGCCCAGTAGCCTGGAGG
ACAGACGTTCTCGCTCTCCTCTCTCCTCCGTCATGCTTTTTCTTAGCATC
CTCTTCTTCGCCTCTTCCTGCGGTGTCATAGCCCTCGCCACCTTCTCCAC
CTCCTCCTCCTCTGCCTCCTCCTCTGCCTCCTCTTCCTCCTCCTCATCCT
CTCTTTCCCCCTTCTCCTCTTCTACAACACATGAGATGGTCACTTTTGCT
GCAGAAAATACCCTTTCTATGACCCTACCACACCTCCCCCCCTCCCCCTC
CTCCTTCCACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCATCC
CGGCCCCCAGCCCTTCATCCTCCCTCGCCTCCCTTCATACCTCTCCTCCT
ACCCTCTTTCCCGTCCTGCCCCAGTCCCTTGCTCTGGGTGTTTGTTGGGC
TCCCAAACACAACATGACCAATCCCAGCGTCGAAATCCTTGAAGACGCCC
TCCTGATCCGACGTCACTTTCGGCAAGTCCGTACGTTCTATTCGTCCTAC
TACTCCTTGCCCGTCCTCCCTCTCTTCGTTCGGGCAGGGATCAAGGTGGT
GCTAGGGGTATTCATGTACCCAGAAGAACCCTCGTGGACCGAAGCGGAGA
AGCAGACGGCGATACAGAGTGCGATTGCCTACCCGGAAGAGACTCTCGCC
ATCTACGTGGGGAATGAGAATGTGTATCCCTATAAAAACTTTACGGTCGA
CATGTTGGTCAAGCATATGAGGGATGTCAGGGAAGGGGTGAGGGAGGGTT
TGTTGCTGAAGGCCAAGGAGGGAGGATGGGAGGGAAGCAAGATCCCGCCT
GTGGGGACGGTGCAGAGGTTGACTGAATGGATGATAGAGGGGAAGGAGAT
GGATCGGCTTGCGGAAAGTTCGGATCTAATTGGGGTAAATTTATATCCGT
ATTTCAGCGTTGATGGAGAGGACCTGGAGACACAGTGGGCCAAAATGGTG
AAGCGCTATCCGAAGCACGCGCACAAAATACGAATGACCGAAACGGGCTG
GCCCAGCGCAGGGAACCCTAATTTCGCGAATTTTACGGCTAGCCACGACC
AAGCCCGAGACTTCTATAGCACTTACTTGAAATGGGCTTGTAAGCAGTCA
AAACCGGAGGGAGGGAAAGAGGGATGGGTGAGCCCTGCAGCAACAGCCGT
AAAAGAGACGTTTTATTACGCTTATTTTGATGGGAGGGCTCCGAGCGTCG
CCCCTGATTACGAGGCTCACTTCGGGTTGGTGAGCGAAAGTGACAACACA
CCCAAATTTCCTTTGGCAGAAGGTGGGCTGTGTCCGACTAAAATGAAGGA
ACAAGGAATGAAGGACGAGACAGAGAGAGGGGTGGAAGGAGGGATAGAGG
ACGACATGAAAGAGTAG
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Synonyms
Publications