NO22G01640.1, NO22G01640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01640.1
Unique NameNO22G01640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1401
Alignment locationchr22:480373..481773 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:480373..481773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G01640.1 vs.
Match: EWM21518.1 (hypothetical protein Naga_100679g2 [Nannochloropsis gaditana])

HSP 1 Score: 352.1 bits (902), Expect = 2.700e-93
Identity = 216/483 (44.72%), Postives = 280/483 (57.97%), Query Frame = 0 
Query:   10 SSSTSTSWLIACLA------------LGLLVRLDSTSSISSTAPEVDADKTSGSSG----PFPSSYSPPSPRFLLRQQRQRQLQQP--------VQTDAQTDLSPSIPVSVALGGNAASSPSMSSPFSSLKNTTITTTSDPPANTNPTDAPSGNSGTVDSSSINSEATHHVDLPVLLGLDSGRPAKVLYPSRIPHDHNLPLVLVLHAWGSNATYHASYLGVTDRVQQYNFVALLPNGILNSKGFRFWNAPACCNRENIAVDDLGYLTDLLNEAKRKLPIDPEKIFVIGHSNGGQMALYLTCRYNESGRIRGLVSIAGFSLPPGCQLSQPSSALFVHGTEDDVVPYESSVQVFNQWVERQNCLPERNPVLPSSSTVSASASSIGASREP---PSSIPFCKRSKNPDPTSLLLPQS------PSSLMSSASSNCTQFTRDFDCDSGKAKGVKDPTFSNYRDSNCGLSGNETVITQYVDCGIGREG 460
            SS++STS  I   A            + LLV   +   +SS   E ++   S + G    P P S  PP       + R+  +  P        V+    + +S ++P+  AL  +A+     SS  S L          P   T     P                   + LP  +GL+SGRPA VLYP        LPLV+VLHAWGSNA+ HA+YLGV++R+ ++ F+ALLPNGI NSKG+RFWNAPACCNRE IAVDDLGYLTDLL EA+ +LP+DP ++++ GHSNGGQMALYL CR    G IRGLVSIAGF  PP C   +P SALF+HGT+D VVP+++S+Q F++WVE + CL E     P ++++ +SA  IGAS  P    SS P+C+ SK  DP+S+L P        P S   S +S C+QFTRD DCD   A G KDP  S+YRD+NC L G ETV+TQYV CG G +G
Sbjct:    5 SSTSSTSTAIVSRATTFLFSRRLHFIVSLLVLCGTLLPVSSGTREAESGPASSAPGFSAAPPPLSLRPPP------KAREETMSSPHYMPKSEGVEEVNLSAISDTMPLDPALSSSASKPDPTSSATSPLPRDQA-----PKIRTARRMPP-------------------IALPSFIGLESGRPAAVLYPPHAALSPPLPLVVVLHAWGSNASEHAAYLGVSERLSRFQFIALLPNGIKNSKGYRFWNAPACCNREGIAVDDLGYLTDLLQEARDRLPVDPARVYLTGHSNGGQMALYLACRSGGEGHIRGLVSIAGFGPPPACPAPRPCSALFIHGTDDAVVPFDTSLQAFDKWVEGEGCLAESPLSTPPAASLPSSA--IGASSPPTPTASSQPYCRLSKPSDPSSMLNPSEFPAPILPFSSPHSPASTCSQFTRDLDCDPSFAVGAKDPRLSSYRDANCALRGEETVVTQYVGCG-GEKG 454
The following BLAST results are available for this feature:
BLAST of NO22G01640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21518.12.700e-9344.72hypothetical protein Naga_100679g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01640NO22G01640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01640.1NO22G01640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01640.1.cds1NO22G01640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01640.1 ID=NO22G01640.1|Name=NO22G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1401bp
ATGGCCCGCTCCCGCGTCCCCTCCATTTCATCCTCCACCTCCACCTCGTG
GCTTATAGCATGCCTGGCCCTGGGCCTCCTCGTACGACTCGACAGTACCA
GCAGCATCAGCAGTACCGCCCCAGAGGTTGACGCAGACAAGACCTCAGGA
TCGAGCGGGCCCTTCCCCTCAAGCTACTCTCCGCCTTCTCCCCGTTTTTT
GCTGCGACAGCAACGACAACGCCAACTACAACAACCAGTTCAAACAGACG
CGCAGACCGACCTTTCACCTTCAATCCCCGTCTCAGTGGCCCTAGGAGGC
AATGCTGCGTCATCACCTTCCATGTCCTCCCCATTCTCCTCCCTCAAGAA
CACCACGATCACTACCACGAGTGATCCTCCTGCTAACACAAATCCCACTG
ACGCTCCGAGCGGAAACAGCGGCACTGTGGATAGCAGCAGCATAAACAGC
GAGGCCACGCACCATGTGGACCTCCCCGTCTTACTCGGCCTCGACAGCGG
CCGCCCCGCAAAAGTTCTGTACCCCTCCCGCATCCCCCATGACCATAACC
TGCCCCTCGTCCTGGTCCTCCACGCTTGGGGAAGCAATGCCACCTATCAC
GCATCCTATCTCGGAGTGACTGATCGAGTGCAACAATATAATTTCGTTGC
CCTTCTTCCCAACGGGATCCTAAATTCTAAAGGTTTCCGGTTCTGGAACG
CCCCTGCTTGTTGCAACCGTGAGAATATCGCCGTCGATGACCTCGGGTAC
CTCACTGATCTCCTTAACGAGGCCAAGCGAAAGCTACCCATCGATCCTGA
AAAAATCTTTGTCATCGGTCACTCGAATGGGGGGCAGATGGCTCTTTACC
TCACCTGTCGCTACAATGAATCGGGGCGCATCCGAGGCCTTGTCTCCATC
GCGGGCTTCAGCCTCCCCCCTGGGTGTCAGCTGTCCCAACCTTCTTCTGC
CTTATTCGTGCATGGGACAGAGGATGACGTAGTACCCTACGAGTCAAGTG
TCCAGGTTTTCAACCAGTGGGTGGAACGCCAAAACTGCCTTCCCGAGCGA
AACCCTGTGCTCCCTTCCTCCTCCACCGTGTCGGCCTCGGCGTCGTCCAT
AGGTGCCTCGCGAGAGCCTCCTTCCTCTATCCCCTTTTGTAAGCGCAGTA
AGAACCCGGATCCTACATCATTGCTCTTGCCTCAGTCGCCTTCCTCCCTC
ATGTCCTCCGCTTCTTCCAACTGCACTCAATTTACCCGCGACTTCGACTG
CGACTCGGGCAAGGCAAAAGGGGTCAAGGACCCTACCTTTTCTAATTACC
GTGACAGCAATTGTGGCTTAAGCGGGAATGAAACGGTCATCACGCAGTAC
GTTGATTGTGGTATTGGGAGGGAGGGGGGGGGGAAGGAGGTGCGAATGTG
A
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protein sequence of NO22G01640.1

>NO22G01640.1-protein ID=NO22G01640.1-protein|Name=NO22G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp
MARSRVPSISSSTSTSWLIACLALGLLVRLDSTSSISSTAPEVDADKTSG
SSGPFPSSYSPPSPRFLLRQQRQRQLQQPVQTDAQTDLSPSIPVSVALGG
NAASSPSMSSPFSSLKNTTITTTSDPPANTNPTDAPSGNSGTVDSSSINS
EATHHVDLPVLLGLDSGRPAKVLYPSRIPHDHNLPLVLVLHAWGSNATYH
ASYLGVTDRVQQYNFVALLPNGILNSKGFRFWNAPACCNRENIAVDDLGY
LTDLLNEAKRKLPIDPEKIFVIGHSNGGQMALYLTCRYNESGRIRGLVSI
AGFSLPPGCQLSQPSSALFVHGTEDDVVPYESSVQVFNQWVERQNCLPER
NPVLPSSSTVSASASSIGASREPPSSIPFCKRSKNPDPTSLLLPQSPSSL
MSSASSNCTQFTRDFDCDSGKAKGVKDPTFSNYRDSNCGLSGNETVITQY
VDCGIGREGGGKEVRM*
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mRNA from alignment at chr22:480373..481773+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01640.1 ID=NO22G01640.1|Name=NO22G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1401bp|location=Sequence derived from alignment at chr22:480373..481773+ (Nannochloropsis oceanica)
ATGGCCCGCTCCCGCGTCCCCTCCATTTCATCCTCCACCTCCACCTCGTG
GCTTATAGCATGCCTGGCCCTGGGCCTCCTCGTACGACTCGACAGTACCA
GCAGCATCAGCAGTACCGCCCCAGAGGTTGACGCAGACAAGACCTCAGGA
TCGAGCGGGCCCTTCCCCTCAAGCTACTCTCCGCCTTCTCCCCGTTTTTT
GCTGCGACAGCAACGACAACGCCAACTACAACAACCAGTTCAAACAGACG
CGCAGACCGACCTTTCACCTTCAATCCCCGTCTCAGTGGCCCTAGGAGGC
AATGCTGCGTCATCACCTTCCATGTCCTCCCCATTCTCCTCCCTCAAGAA
CACCACGATCACTACCACGAGTGATCCTCCTGCTAACACAAATCCCACTG
ACGCTCCGAGCGGAAACAGCGGCACTGTGGATAGCAGCAGCATAAACAGC
GAGGCCACGCACCATGTGGACCTCCCCGTCTTACTCGGCCTCGACAGCGG
CCGCCCCGCAAAAGTTCTGTACCCCTCCCGCATCCCCCATGACCATAACC
TGCCCCTCGTCCTGGTCCTCCACGCTTGGGGAAGCAATGCCACCTATCAC
GCATCCTATCTCGGAGTGACTGATCGAGTGCAACAATATAATTTCGTTGC
CCTTCTTCCCAACGGGATCCTAAATTCTAAAGGTTTCCGGTTCTGGAACG
CCCCTGCTTGTTGCAACCGTGAGAATATCGCCGTCGATGACCTCGGGTAC
CTCACTGATCTCCTTAACGAGGCCAAGCGAAAGCTACCCATCGATCCTGA
AAAAATCTTTGTCATCGGTCACTCGAATGGGGGGCAGATGGCTCTTTACC
TCACCTGTCGCTACAATGAATCGGGGCGCATCCGAGGCCTTGTCTCCATC
GCGGGCTTCAGCCTCCCCCCTGGGTGTCAGCTGTCCCAACCTTCTTCTGC
CTTATTCGTGCATGGGACAGAGGATGACGTAGTACCCTACGAGTCAAGTG
TCCAGGTTTTCAACCAGTGGGTGGAACGCCAAAACTGCCTTCCCGAGCGA
AACCCTGTGCTCCCTTCCTCCTCCACCGTGTCGGCCTCGGCGTCGTCCAT
AGGTGCCTCGCGAGAGCCTCCTTCCTCTATCCCCTTTTGTAAGCGCAGTA
AGAACCCGGATCCTACATCATTGCTCTTGCCTCAGTCGCCTTCCTCCCTC
ATGTCCTCCGCTTCTTCCAACTGCACTCAATTTACCCGCGACTTCGACTG
CGACTCGGGCAAGGCAAAAGGGGTCAAGGACCCTACCTTTTCTAATTACC
GTGACAGCAATTGTGGCTTAAGCGGGAATGAAACGGTCATCACGCAGTAC
GTTGATTGTGGTATTGGGAGGGAGGGGGGGGGGAAGGAGGTGCGAATGTG
A
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Coding sequence (CDS) from alignment at chr22:480373..481773+

>NO22G01640.1 ID=NO22G01640.1|Name=NO22G01640.1|organism=Nannochloropsis oceanica|type=CDS|length=1401bp|location=Sequence derived from alignment at chr22:480373..481773+ (Nannochloropsis oceanica)
ATGGCCCGCTCCCGCGTCCCCTCCATTTCATCCTCCACCTCCACCTCGTG
GCTTATAGCATGCCTGGCCCTGGGCCTCCTCGTACGACTCGACAGTACCA
GCAGCATCAGCAGTACCGCCCCAGAGGTTGACGCAGACAAGACCTCAGGA
TCGAGCGGGCCCTTCCCCTCAAGCTACTCTCCGCCTTCTCCCCGTTTTTT
GCTGCGACAGCAACGACAACGCCAACTACAACAACCAGTTCAAACAGACG
CGCAGACCGACCTTTCACCTTCAATCCCCGTCTCAGTGGCCCTAGGAGGC
AATGCTGCGTCATCACCTTCCATGTCCTCCCCATTCTCCTCCCTCAAGAA
CACCACGATCACTACCACGAGTGATCCTCCTGCTAACACAAATCCCACTG
ACGCTCCGAGCGGAAACAGCGGCACTGTGGATAGCAGCAGCATAAACAGC
GAGGCCACGCACCATGTGGACCTCCCCGTCTTACTCGGCCTCGACAGCGG
CCGCCCCGCAAAAGTTCTGTACCCCTCCCGCATCCCCCATGACCATAACC
TGCCCCTCGTCCTGGTCCTCCACGCTTGGGGAAGCAATGCCACCTATCAC
GCATCCTATCTCGGAGTGACTGATCGAGTGCAACAATATAATTTCGTTGC
CCTTCTTCCCAACGGGATCCTAAATTCTAAAGGTTTCCGGTTCTGGAACG
CCCCTGCTTGTTGCAACCGTGAGAATATCGCCGTCGATGACCTCGGGTAC
CTCACTGATCTCCTTAACGAGGCCAAGCGAAAGCTACCCATCGATCCTGA
AAAAATCTTTGTCATCGGTCACTCGAATGGGGGGCAGATGGCTCTTTACC
TCACCTGTCGCTACAATGAATCGGGGCGCATCCGAGGCCTTGTCTCCATC
GCGGGCTTCAGCCTCCCCCCTGGGTGTCAGCTGTCCCAACCTTCTTCTGC
CTTATTCGTGCATGGGACAGAGGATGACGTAGTACCCTACGAGTCAAGTG
TCCAGGTTTTCAACCAGTGGGTGGAACGCCAAAACTGCCTTCCCGAGCGA
AACCCTGTGCTCCCTTCCTCCTCCACCGTGTCGGCCTCGGCGTCGTCCAT
AGGTGCCTCGCGAGAGCCTCCTTCCTCTATCCCCTTTTGTAAGCGCAGTA
AGAACCCGGATCCTACATCATTGCTCTTGCCTCAGTCGCCTTCCTCCCTC
ATGTCCTCCGCTTCTTCCAACTGCACTCAATTTACCCGCGACTTCGACTG
CGACTCGGGCAAGGCAAAAGGGGTCAAGGACCCTACCTTTTCTAATTACC
GTGACAGCAATTGTGGCTTAAGCGGGAATGAAACGGTCATCACGCAGTAC
GTTGATTGTGGTATTGGGAGGGAGGGGGGGGGGAAGGAGGTGCGAATGTG
A
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Synonyms
Publications