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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr22 | genome | chr22:471321..473935 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO22G01610.1 vs.
Match: XP_009823871.1 (hypothetical protein H257_02076 [Aphanomyces astaci]; ETV87072.1 hypothetical protein H257_02076 [Aphanomyces astaci]) HSP 1 Score: 88.2 bits (217), Expect = 1.100e-13 Identity = 87/300 (29.00%), Postives = 120/300 (40.00%), Query Frame = 0
Query: 398 VLPVYSLPIHVSSSSSSSTSTAATTTSSKSAALGIHSCRGVFVPSLHRHLLVAESPGQVGIGGKIWDAGLVLTQYLAAHPNVIRGGRKGEVGEMGAVAAAVVGVREEKGGRAGGRTREKRRRECRVIELGAGTGIAGIAASLLGAGHVVVTDLPHVVPLIQTNIDLNVPPSSLSSSSSPPCIARAYAWGEGTACLFYEGRGGESDDRKGGAQAAKGKIQGKREVEDEDGREDEAEGKFDVILLADVVYEPKYYSALVKALRDLSYSETLIIFAHRERHPDCSWFFTEADREFSRKMVHCD 698
VLPV SLPI + +T+ ++ LGI CR V+V + R + +AESPG +GIGGK+WD+ L+LT + A A V G VIELG+G G+ G+A + LP V ++ T+ID VP L Y R + D+ G E +DV+LL+DVVY+P Y LV +LRDL+ +T I+ HR RHP FF EF+ + D
Sbjct: 268 VLPVVSLPIQ------AIPTTSTILFEYENDPLGIQCCRSVWVEGVDRFITLAESPGNLGIGGKLWDSSLILT------------------AYLAAHPAVVSGKH--------------------VIELGSGLGLVGLACA----------SLPAVASVVLTDIDDVVP------------------------LLEYNVRLNDLSDKASVKPLWWGT-----------SIEHLFNAPYDVVLLSDVVYDPFGYKPLVASLRDLTSPDTTILMGHRSRHPQEKQFFDSLQLEFTLTSIPLD 478
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO22G01610.1 ID=NO22G01610.1|Name=NO22G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2391bp
CTTCTAAGACCTCCCCACCCCATAACTCAAACTCAGCACACTACAACGCT
TGTCCACAGCAGCATGGTAAACGACCAGAAGGACAACGATGAGGATCCCG
CCGTGGTGCTGGACGCGCTGCGGGAAAGAGGAAACACAAGTTATAAGCAA
GGCCGGTACTCAGAAGCCATCATTGCCTGGACCGAGGCTCTGTCTGTCAC
CACCGCAACCATTCAAGGCAGCAACGTAAGTGTCACTGCCACGACTACCA
CGGGCAACACCAGCATTGCATCCATCCTTCTCTCCAACCGAGCCCAAGCC
CAGCTTCAACTTCGAGAATATGTCCTCGCTGACCTCGATGCCGCCGCTGC
TCTTCGTCTCGATCCCCACAATACCAAAGCCTCTATCCGCCGTGCCACGG
CCCTTCTTGCCCGTGAGCGTTTCACCACCGCCCACCGTGTGCTCAACCAT
GCCCTCGCCTCCTCCTCGTCTTCCCTCCCTCCCTCCTTCCTCAAGTCATT
GCACGCTCTCCGGGCACAAGCAAGGCACTTAACGCAATTGTCTGCCACGC
CTGCAGCACGCGATGCAGCAGCAGTGGAAGCAGAGGGGTTAGTGGACGAG
GCACAGACCTTGCGTCTCTCTTTCCGCGACGCCCCGCTGGCAGGGAGGGA
AGGAGGGAGGGAAGGTGTGTGCTGGGGGGAGTGGATTGAGATGTCGGTGT
TTTTGGCCAATGAGTTCGGTTTGTGGCGACGGACGGACTTTCCGATGATG
GAGGAGAATGAGGGAGAGAGGGATGAAGGGAAGGGCGGAGGGGGTTGGCT
GCCGGTGCGCTTCAGTGTGCTGGACCATGGGAGTGATAACTGTGAGGTCA
GTCAAATGGTAGGCGTGGAGGTAGAAAGACTGCCTTCACAGACAGAGGAC
GAAGAGGAGGACGAGGGGAAGAAGGAGGAGGAAGAGGGAGGGAAGGAGGA
AAGAAGACGGGTGGCCTTTAGGAAGGGATCCAGTTGTCGACTGAGGGTAC
GTGTACGCTTCGTTTTGCTTGGGCATAACGCTGCTGCTGCTGCTGGTGCT
GATGCTGCTGTTGCTGCTACTACTACTGCTTCCTCTTCTTCTTCTTCCTC
CTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCCC
CCTCCCCTCCTTCCTCATTATCATCATCGCCATCCTCCGACTTTTCCTCC
TGCGCAGTAGTCCACATTAAGGTCTCTTTGCCTTCGGAAAAGCTTACGCG
CCAAGTCCTCCCCGTGTATTCCCTCCCCATCCACGTCTCATCTTCCTCCT
CCTCTTCTACCTCTACCGCAGCCACCACCACCTCCTCAAAGTCCGCTGCC
CTGGGCATCCACTCCTGCCGAGGTGTCTTCGTCCCCTCCCTCCATCGGCA
CCTGCTCGTGGCGGAGTCTCCCGGCCAGGTCGGGATAGGAGGAAAAATCT
GGGATGCGGGCCTTGTGCTCACTCAGTACCTCGCCGCACACCCGAATGTG
ATTAGAGGAGGGAGGAAGGGAGAGGTTGGAGAGATGGGTGCGGTAGCAGC
AGCAGTAGTAGGAGTTAGAGAGGAGAAGGGAGGAAGGGCGGGAGGGAGGA
CGAGGGAGAAGAGGAGGAGGGAGTGCCGAGTTATTGAGTTGGGGGCCGGA
ACGGGGATCGCGGGAATCGCTGCCTCTTTACTGGGAGCAGGCCACGTGGT
CGTGACTGATCTTCCTCATGTTGTTCCTTTGATTCAAACCAACATTGATC
TTAACGTTCCTCCTTCCTCCCTCTCATCCTCGTCCTCGCCCCCGTGCATT
GCCCGGGCTTATGCATGGGGGGAGGGTACCGCCTGTCTGTTTTACGAGGG
AAGAGGGGGAGAGAGCGACGACAGGAAGGGGGGCGCACAGGCAGCAAAAG
GGAAGATCCAGGGAAAGAGGGAGGTCGAAGACGAAGACGGGCGGGAGGAC
GAGGCGGAGGGAAAGTTTGATGTCATCCTTCTGGCGGATGTTGTGTATGA
ACCGAAGTACTATTCTGCCCTAGTAAAGGCGCTGAGGGACTTGTCTTATT
CCGAGACTCTCATTATTTTTGCTCACCGGGAACGGCATCCTGACTGCTCT
TGGTTCTTTACAGAGGCCGATAGGGAGTTTAGCAGGAAGATGGTTCATTG
TGATTTTCAGGTGGAGGGGGAGAGAGGCAGCGAGGAAGGACCCGCATGGA
GGGGGGGGGAAAGGCGGCATGTCAGGATGTGGTAATATATGAGATGAGGT
TGAAAAAGGGAAGGAAGGAGGAAAGAGAGGAGGTGATAGGTTACTGAGGC
GCTTAGAAAGGCATATGTACTAATATTGCTATCCATAGAAATCAACGCGA
CGACGAATAATAGTAATGATAATAGTAACGACAATGACCGA back to topprotein sequence of NO22G01610.1 >NO22G01610.1-protein ID=NO22G01610.1-protein|Name=NO22G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=724bp
MVNDQKDNDEDPAVVLDALRERGNTSYKQGRYSEAIIAWTEALSVTTATI
QGSNVSVTATTTTGNTSIASILLSNRAQAQLQLREYVLADLDAAAALRLD
PHNTKASIRRATALLARERFTTAHRVLNHALASSSSSLPPSFLKSLHALR
AQARHLTQLSATPAARDAAAVEAEGLVDEAQTLRLSFRDAPLAGREGGRE
GVCWGEWIEMSVFLANEFGLWRRTDFPMMEENEGERDEGKGGGGWLPVRF
SVLDHGSDNCEVSQMVGVEVERLPSQTEDEEEDEGKKEEEEGGKEERRRV
AFRKGSSCRLRVRVRFVLLGHNAAAAAGADAAVAATTTASSSSSSSSSSS
SSSSSSSSSSSSPSPPSSLSSSPSSDFSSCAVVHIKVSLPSEKLTRQVLP
VYSLPIHVSSSSSSSTSTAATTTSSKSAALGIHSCRGVFVPSLHRHLLVA
ESPGQVGIGGKIWDAGLVLTQYLAAHPNVIRGGRKGEVGEMGAVAAAVVG
VREEKGGRAGGRTREKRRRECRVIELGAGTGIAGIAASLLGAGHVVVTDL
PHVVPLIQTNIDLNVPPSSLSSSSSPPCIARAYAWGEGTACLFYEGRGGE
SDDRKGGAQAAKGKIQGKREVEDEDGREDEAEGKFDVILLADVVYEPKYY
SALVKALRDLSYSETLIIFAHRERHPDCSWFFTEADREFSRKMVHCDFQV
EGERGSEEGPAWRGGERRHVRMW* back to topmRNA from alignment at chr22:471321..473935- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO22G01610.1 ID=NO22G01610.1|Name=NO22G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2615bp|location=Sequence derived from alignment at chr22:471321..473935- (Nannochloropsis oceanica)
CTTCTAAGACCTCCCCACCCCATAACTCAAACTCAGCACACTACAACGCT
TGTCCACAGCAGCATGGTAAACGACCAGAAGGACAACGATGAGGATCCCG
CCGTGGTGCTGGACGCGCTGCGGGAAAGAGGAAACACAAGTTATAAGCAA
GGTACGTGGTTTCACTAGGACGTGGGGCGTAGGAGAGCATGGCCTCCCAC
AGGACGCACAGTGAAAGTTGGCTATAGAGAATCCAATATAGCAATTTTGG
TACCTCTCTTAATGTTGGCTATTTAAAATCTTTGCCGAGACCTTTTTCAA
CCCGCACGCTTGAGCAGTAGTCCCTGTCTATTTCATCTCTTCCCCCTCCT
CCCCACGGGACCTAAATATATATAGGCCGGTACTCAGAAGCCATCATTGC
CTGGACCGAGGCTCTGTCTGTCACCACCGCAACCATTCAAGGCAGCAACG
TAAGTGTCACTGCCACGACTACCACGGGCAACACCAGCATTGCATCCATC
CTTCTCTCCAACCGAGCCCAAGCCCAGCTTCAACTTCGAGAATATGTCCT
CGCTGACCTCGATGCCGCCGCTGCTCTTCGTCTCGATCCCCACAATACCA
AAGCCTCTATCCGCCGTGCCACGGCCCTTCTTGCCCGTGAGCGTTTCACC
ACCGCCCACCGTGTGCTCAACCATGCCCTCGCCTCCTCCTCGTCTTCCCT
CCCTCCCTCCTTCCTCAAGTCATTGCACGCTCTCCGGGCACAAGCAAGGC
ACTTAACGCAATTGTCTGCCACGCCTGCAGCACGCGATGCAGCAGCAGTG
GAAGCAGAGGGGTTAGTGGACGAGGCACAGACCTTGCGTCTCTCTTTCCG
CGACGCCCCGCTGGCAGGGAGGGAAGGAGGGAGGGAAGGTGTGTGCTGGG
GGGAGTGGATTGAGATGTCGGTGTTTTTGGCCAATGAGTTCGGTTTGTGG
CGACGGACGGACTTTCCGATGATGGAGGAGAATGAGGGAGAGAGGGATGA
AGGGAAGGGCGGAGGGGGTTGGCTGCCGGTGCGCTTCAGTGTGCTGGACC
ATGGGAGTGATAACTGTGAGGTCAGTCAAATGGTAGGCGTGGAGGTAGAA
AGACTGCCTTCACAGACAGAGGACGAAGAGGAGGACGAGGGGAAGAAGGA
GGAGGAAGAGGGAGGGAAGGAGGAAAGAAGACGGGTGGCCTTTAGGAAGG
GATCCAGTTGTCGACTGAGGGTACGTGTACGCTTCGTTTTGCTTGGGCAT
AACGCTGCTGCTGCTGCTGGTGCTGATGCTGCTGTTGCTGCTACTACTAC
TGCTTCCTCTTCTTCTTCTTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCGTCCCCCTCCCCTCCTTCCTCATTATCATCA
TCGCCATCCTCCGACTTTTCCTCCTGCGCAGTAGTCCACATTAAGGTCTC
TTTGCCTTCGGAAAAGCTTACGCGCCAAGTCCTCCCCGTGTATTCCCTCC
CCATCCACGTCTCATCTTCCTCCTCCTCTTCTACCTCTACCGCAGCCACC
ACCACCTCCTCAAAGTCCGCTGCCCTGGGCATCCACTCCTGCCGAGGTGT
CTTCGTCCCCTCCCTCCATCGGCACCTGCTCGTGGCGGAGTCTCCCGGCC
AGGTCGGGATAGGAGGAAAAATCTGGGATGCGGGCCTTGTGCTCACTCAG
TACCTCGCCGCACACCCGAATGTGATTAGAGGAGGGAGGAAGGGAGAGGT
TGGAGAGATGGGTGCGGTAGCAGCAGCAGTAGTAGGAGTTAGAGAGGAGA
AGGGAGGAAGGGCGGGAGGGAGGACGAGGGAGAAGAGGAGGAGGGAGTGC
CGAGTTATTGAGTTGGGGGCCGGAACGGGGATCGCGGGAATCGCTGCCTC
TTTACTGGGAGCAGGCCACGTGGTCGTGACTGATCTTCCTCATGTTGTTC
CTTTGATTCAAACCAACATTGATCTTAACGTTCCTCCTTCCTCCCTCTCA
TCCTCGTCCTCGCCCCCGTGCATTGCCCGGGCTTATGCATGGGGGGAGGG
TACCGCCTGTCTGTTTTACGAGGGAAGAGGGGGAGAGAGCGACGACAGGA
AGGGGGGCGCACAGGCAGCAAAAGGGAAGATCCAGGGAAAGAGGGAGGTC
GAAGACGAAGACGGGCGGGAGGACGAGGCGGAGGGAAAGTTTGATGTCAT
CCTTCTGGCGGATGTTGTGTATGAACCGAAGTACTATTCTGCCCTAGTAA
AGGCGCTGAGGGACTTGTCTTATTCCGAGACTCTCATTATTTTTGCTCAC
CGGGAACGGCATCCTGACTGCTCTTGGTTCTTTACAGAGGCCGATAGGGA
GTTTAGCAGGAAGATGGTTCATTGTGATTTTCAGGTGGAGGGGGAGAGAG
GCAGCGAGGAAGGACCCGCATGGAGGGGGGGGGAAAGGCGGCATGTCAGG
ATGTGGTAATATATGAGATGAGGTTGAAAAAGGGAAGGAAGGAGGAAAGA
GAGGAGGTGATAGGTTACTGAGGCGCTTAGAAAGGCATATGTACTAATAT
TGCTATCCATAGAAATCAACGCGACGACGAATAATAGTAATGATAATAGT
AACGACAATGACCGA back to topCoding sequence (CDS) from alignment at chr22:471321..473935- >NO22G01610.1 ID=NO22G01610.1|Name=NO22G01610.1|organism=Nannochloropsis oceanica|type=CDS|length=2172bp|location=Sequence derived from alignment at chr22:471321..473935- (Nannochloropsis oceanica)
ATGGTAAACGACCAGAAGGACAACGATGAGGATCCCGCCGTGGTGCTGGA
CGCGCTGCGGGAAAGAGGAAACACAAGTTATAAGCAAGGCCGGTACTCAG
AAGCCATCATTGCCTGGACCGAGGCTCTGTCTGTCACCACCGCAACCATT
CAAGGCAGCAACGTAAGTGTCACTGCCACGACTACCACGGGCAACACCAG
CATTGCATCCATCCTTCTCTCCAACCGAGCCCAAGCCCAGCTTCAACTTC
GAGAATATGTCCTCGCTGACCTCGATGCCGCCGCTGCTCTTCGTCTCGAT
CCCCACAATACCAAAGCCTCTATCCGCCGTGCCACGGCCCTTCTTGCCCG
TGAGCGTTTCACCACCGCCCACCGTGTGCTCAACCATGCCCTCGCCTCCT
CCTCGTCTTCCCTCCCTCCCTCCTTCCTCAAGTCATTGCACGCTCTCCGG
GCACAAGCAAGGCACTTAACGCAATTGTCTGCCACGCCTGCAGCACGCGA
TGCAGCAGCAGTGGAAGCAGAGGGGTTAGTGGACGAGGCACAGACCTTGC
GTCTCTCTTTCCGCGACGCCCCGCTGGCAGGGAGGGAAGGAGGGAGGGAA
GGTGTGTGCTGGGGGGAGTGGATTGAGATGTCGGTGTTTTTGGCCAATGA
GTTCGGTTTGTGGCGACGGACGGACTTTCCGATGATGGAGGAGAATGAGG
GAGAGAGGGATGAAGGGAAGGGCGGAGGGGGTTGGCTGCCGGTGCGCTTC
AGTGTGCTGGACCATGGGAGTGATAACTGTGAGGTCAGTCAAATGGTAGG
CGTGGAGGTAGAAAGACTGCCTTCACAGACAGAGGACGAAGAGGAGGACG
AGGGGAAGAAGGAGGAGGAAGAGGGAGGGAAGGAGGAAAGAAGACGGGTG
GCCTTTAGGAAGGGATCCAGTTGTCGACTGAGGGTACGTGTACGCTTCGT
TTTGCTTGGGCATAACGCTGCTGCTGCTGCTGGTGCTGATGCTGCTGTTG
CTGCTACTACTACTGCTTCCTCTTCTTCTTCTTCCTCCTCCTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCCCCCTCCCCTCCTTC
CTCATTATCATCATCGCCATCCTCCGACTTTTCCTCCTGCGCAGTAGTCC
ACATTAAGGTCTCTTTGCCTTCGGAAAAGCTTACGCGCCAAGTCCTCCCC
GTGTATTCCCTCCCCATCCACGTCTCATCTTCCTCCTCCTCTTCTACCTC
TACCGCAGCCACCACCACCTCCTCAAAGTCCGCTGCCCTGGGCATCCACT
CCTGCCGAGGTGTCTTCGTCCCCTCCCTCCATCGGCACCTGCTCGTGGCG
GAGTCTCCCGGCCAGGTCGGGATAGGAGGAAAAATCTGGGATGCGGGCCT
TGTGCTCACTCAGTACCTCGCCGCACACCCGAATGTGATTAGAGGAGGGA
GGAAGGGAGAGGTTGGAGAGATGGGTGCGGTAGCAGCAGCAGTAGTAGGA
GTTAGAGAGGAGAAGGGAGGAAGGGCGGGAGGGAGGACGAGGGAGAAGAG
GAGGAGGGAGTGCCGAGTTATTGAGTTGGGGGCCGGAACGGGGATCGCGG
GAATCGCTGCCTCTTTACTGGGAGCAGGCCACGTGGTCGTGACTGATCTT
CCTCATGTTGTTCCTTTGATTCAAACCAACATTGATCTTAACGTTCCTCC
TTCCTCCCTCTCATCCTCGTCCTCGCCCCCGTGCATTGCCCGGGCTTATG
CATGGGGGGAGGGTACCGCCTGTCTGTTTTACGAGGGAAGAGGGGGAGAG
AGCGACGACAGGAAGGGGGGCGCACAGGCAGCAAAAGGGAAGATCCAGGG
AAAGAGGGAGGTCGAAGACGAAGACGGGCGGGAGGACGAGGCGGAGGGAA
AGTTTGATGTCATCCTTCTGGCGGATGTTGTGTATGAACCGAAGTACTAT
TCTGCCCTAGTAAAGGCGCTGAGGGACTTGTCTTATTCCGAGACTCTCAT
TATTTTTGCTCACCGGGAACGGCATCCTGACTGCTCTTGGTTCTTTACAG
AGGCCGATAGGGAGTTTAGCAGGAAGATGGTTCATTGTGATTTTCAGGTG
GAGGGGGAGAGAGGCAGCGAGGAAGGACCCGCATGGAGGGGGGGGGAAAG
GCGGCATGTCAGGATGTGGTAA back to top
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