NO22G01400.2, NO22G01400.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01400.2
Unique NameNO22G01400.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1389
Alignment locationchr22:414580..416925 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:414580..416925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G01400.2 vs.
Match: EWM21496.1 (hypersensitive-induced response protein [Nannochloropsis gaditana])

HSP 1 Score: 456.1 bits (1172), Expect = 7.200e-125
Identity = 232/247 (93.93%), Postives = 242/247 (97.98%), Query Frame = 0 
Query:    1 MPFSCCCLQCVDTSTMGIQERFGNFVGILPPGLNCIMWPIDNVVGRVSARVQQLVCDCGTKTKDNVFVSVQVIVQYQVIVTQAYDAYYKLTDPNLQIRSYVEDIVRSTVPRMELDSAFEAKEELAHAIRDSLQQTMGTYGYTIIQSLVVDIRVDEKVKTAMNEINAAKRLREAAAEKAEADKIVQVKAAEASAESKYLSGMGIARERKAIVDGLRGSVEEFSEVVDGATPKDVMDLILLTQYFDMLK 248
            MPFSCCCLQC+DTST+GIQERFGNFV ILPPG+N I WPIDNVVGRVSARVQQLVCDCGTKTKDNVFV+VQVIVQYQVIV+QAYDAYYKLTDPNLQIRSYVEDIVRSTVP+MELD AFEAKEELAHAIRDSLQQTMGTYGYTIIQSLV+DIRVDEKVKTAMNEINA+KRLREAAAEKAEADKIVQVKAAEASAESKYL+GMGIARERKAIVDGLRGSVEEFSE V+GATPKDVMDLILLTQYFDMLK
Sbjct:    1 MPFSCCCLQCIDTSTLGIQERFGNFVRILPPGMNLICWPIDNVVGRVSARVQQLVCDCGTKTKDNVFVAVQVIVQYQVIVSQAYDAYYKLTDPNLQIRSYVEDIVRSTVPKMELDMAFEAKEELAHAIRDSLQQTMGTYGYTIIQSLVLDIRVDEKVKTAMNEINASKRLREAAAEKAEADKIVQVKAAEASAESKYLNGMGIARERKAIVDGLRGSVEEFSETVEGATPKDVMDLILLTQYFDMLK 247
The following BLAST results are available for this feature:
BLAST of NO22G01400.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21496.17.200e-12593.93hypersensitive-induced response protein [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01400NO22G01400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01400.2NO22G01400.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01400.2.cds1NO22G01400.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01400.2.cds2NO22G01400.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01400.2.cds3NO22G01400.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01400.2.cds4NO22G01400.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01400.2.cds5NO22G01400.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01400.2 ID=NO22G01400.2|Name=NO22G01400.2|organism=Nannochloropsis oceanica|type=mRNA|length=1389bp
AGAACCGCAGGGAAAGTAAGCCGGGACCCGGCAAAGCTTTGTGGGAGAAG
GCCCATCATCGTAACCCTTCCAAGGGCGTCCAGGGTTCTTGATTTCCTCA
CGGGTCATCGCTCGTGTACCATGCCCTTCTCATGCTGTTGCCTGCAGTGT
GTGGACACTTCAACTATGGGCATTCAAGAACGCTTCGGTAATTTTGTCGG
CATTTTGCCTCCGGGACTGAATTGCATCATGTGGCCGATCGACAACGTGG
TGGGCCGTGTGAGTGCGCGGGTCCAGCAGCTGGTTTGTGACTGCGGCACC
AAGACCAAGGATAATGTCTTTGTATCCGTGCAAGTGATCGTCCAGTACCA
AGTTATTGTCACGCAAGCCTACGATGCTTACTATAAGCTCACTGATCCCA
ACCTCCAAATTCGCTCGTACGTAGAGGACATCGTGCGCTCCACTGTGCCA
AGGATGGAGTTGGACTCGGCATTTGAGGCGAAAGAAGAGCTTGCGCACGC
CATCCGCGACTCGCTGCAGCAAACCATGGGGACGTACGGGTACACCATCA
TCCAGAGCCTGGTGGTGGACATTCGGGTGGACGAGAAGGTCAAGACGGCC
ATGAATGAGATTAACGCTGCTAAGCGTTTGAGGGAGGCGGCGGCCGAGAA
GGCAGAGGCGGATAAAATCGTGCAGGTCAAGGCCGCGGAAGCCTCTGCCG
AGAGCAAATACCTCTCGGGGATGGGCATCGCGCGGGAGAGGAAGGCGATC
GTGGATGGCCTACGGGGAAGCGTGGAGGAGTTCTCGGAGGTGGTGGATGG
AGCCACGCCGAAGGATGTGATGGATTTAATTTTGCTGACGCAGTACTTCG
ATATGCTCAAGGTATGCTAGTGGGCTGGGAGGGGAGAGGATGGGGTCGAG
GACGGACGAATTAAGCGTGTCCTGCATGCGTCGGTCCCTATATTTCACCA
CCTCCTTTTTGTGTATGTGGTGTTACTTTTCATCGAGGCTATCACGCACA
GTCTTCTAGGCTCCCTTGCTGGCTTGGCCCTTGCGATGCGACATCTTTTT
GTAAAGCCCGCATACGCATATCTTACTCCCTCCTCCTTTCCGCCATTGCA
CACACATACAGGACGTGGGCAGTAATCCCAGTGCCACCACCCTCTTTATG
AACCACGGCCCCAGTGCCGTCACGGAGCTCAAGGAGCAGTTGAAGGAAGG
CATCATGACCAAGGCCACAACTGCTTCTTCTTGAGACAAACTAAGGAAAA
AGTATTCGAAAATGCCGCATGAACATTTTTTTGAATTTCGAATGGGGGGA
GGCGAGGCCCGTGACGCGTGCGTAGACAGGGTGCACCCCGACAGGACAAA
AAGTGGAAAGGGAAGATGAAAATGCATGTCACCGGCAGA
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protein sequence of NO22G01400.2

>NO22G01400.2-protein ID=NO22G01400.2-protein|Name=NO22G01400.2|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MPFSCCCLQCVDTSTMGIQERFGNFVGILPPGLNCIMWPIDNVVGRVSAR
VQQLVCDCGTKTKDNVFVSVQVIVQYQVIVTQAYDAYYKLTDPNLQIRSY
VEDIVRSTVPRMELDSAFEAKEELAHAIRDSLQQTMGTYGYTIIQSLVVD
IRVDEKVKTAMNEINAAKRLREAAAEKAEADKIVQVKAAEASAESKYLSG
MGIARERKAIVDGLRGSVEEFSEVVDGATPKDVMDLILLTQYFDMLKVC*
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mRNA from alignment at chr22:414580..416925-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01400.2 ID=NO22G01400.2|Name=NO22G01400.2|organism=Nannochloropsis oceanica|type=mRNA|length=2346bp|location=Sequence derived from alignment at chr22:414580..416925- (Nannochloropsis oceanica)
AGAACCGCAGGGAAAGTAAGCCGGGACCCGGCAAAGCTTTGTGGGAGAAG
GCCCATCATCGTAACCCTTCCAAGGGCGTCCAGGGTTCTTGATTTCCTCA
CGGGTCATCGCTCGTGTACCATGCCCTTCTCATGCTGTTGCCTGCAGTGT
GTGGACACTTCAACTATGGGCATTCAAGAACGCTTCGGTAATTTTGTCGG
GTGAGTATAGTGCTCATATCTGTCAGTGGGCGGCCTTGGGGAGGTCTTGT
CGCGACTAGGCTGGCAACGTGTGTGTGTGGACTGGGAACAGCAGTGAAAC
GTACCGCCCACTATCCATTTGAATGTTGATGCTTTGTTGCGCTGCAGGCA
GTATTTTTTCCCGACACAAATGTAAGCGTGAGGGGATTAAACAGGGGAGA
TGAGAGAGCGTGGCGCGAGTACCTTGAATCCTTGCGTATATGCCCTGTCA
TGTCCTGGTCTTTGAATCAACCATTTTCTCATACATCTCGCACTCGTCCT
AAACAATACTATTCTGAACAGCATTTTGCCTCCGGGACTGAATTGCATCA
TGTGGCCGATCGACAACGTGGTGGGCCGTGTGAGTGCGCGGGTCCAGCAG
CTGGTTTGTGACTGCGGCACCAAGACCAAGGATAATGTCTTTGTATCCGT
GCAAGTGATCGTCCAGTACCAAGTTATTGTCACGCAAGCCTACGATGCTT
ACTATAAGCTCACTGATCCCAACCTCCAAATTCGCTCGTAAGTATCCCCT
GTCTCTTTCTGTCCCTCTGTGTACTTCTGTCTTTGTGTCTTTCTATCTCG
GGTTGTGTGGGTGTGGGTGTGGGTGTGTGTGTGTGGGTGTGTGTGTGTGT
GTATGTGTGTATGTACGTACGTATGTATGTATGTGTGTGTGTCGCTCTCT
CTCCTTCTTTTTCTTTTTCCCCCTCTTTTTCCTTCTCTCTCTATCTCATT
CATTCCTTTTCCCCTCTGTCCGTTTTCACCCACGCCCACGCCATCACATC
TCAACTCGACATCTCTTTCACATTAAATTCTCTCTTCCCACTCCTGTTAT
GTAGGTACGTAGAGGACATCGTGCGCTCCACTGTGCCAAGGATGGAGTTG
GACTCGGCATTTGAGGCGAAAGAAGAGCTTGCGCACGCCATCCGCGACTC
GCTGCAGCAAACCATGGGGACGTACGGGTAAGTCAGCACTGAGTGCGTTT
GTGTTCTTCCTTTTTCCGTCGGCCATGCGACAAAGCAGCTTTCTGGACAT
GAAGTGAGCAGATTTCCGGGTAGCTGACTTCTCTCTTCCAGTTTCTACTG
TGCCCCTTAGGAGCTGCAGATAAGGACGACTGGCAATCACCACACCACTC
ACCTATGCATTCAAACCCTCCAGGTACACCATCATCCAGAGCCTGGTGGT
GGACATTCGGGTGGACGAGAAGGTCAAGACGGCCATGAATGAGATTAACG
CTGCTAAGCGTTTGAGGGAGGTAAGTGGGAAGAGAACACCCCACGTCCTC
CACTTGTCTCTTCCGACGACTGTGTCCGTTCTGTCAGCCGTTTAGACCAT
TCTCCAAAGACTCATGTCATGACCAACCCTCCCTCTATAACAGGCGGCGG
CCGAGAAGGCAGAGGCGGATAAAATCGTGCAGGTCAAGGCCGCGGAAGCC
TCTGCCGAGAGCAAATACCTCTCGGGGATGGGCATCGCGCGGGAGAGGAA
GGCGATCGTGGATGGCCTACGGGGAAGCGTGGAGGAGTTCTCGGAGGTGG
TGGATGGAGCCACGCCGAAGGATGTGATGGATTTAATTTTGCTGACGCAG
TACTTCGATATGCTCAAGGTATGCTAGTGGGCTGGGAGGGGAGAGGATGG
GGTCGAGGACGGACGAATTAAGCGTGTCCTGCATGCGTCGGTCCCTATAT
TTCACCACCTCCTTTTTGTGTATGTGGTGTTACTTTTCATCGAGGCTATC
ACGCACAGTCTTCTAGGCTCCCTTGCTGGCTTGGCCCTTGCGATGCGACA
TCTTTTTGTAAAGCCCGCATACGCATATCTTACTCCCTCCTCCTTTCCGC
CATTGCACACACATACAGGACGTGGGCAGTAATCCCAGTGCCACCACCCT
CTTTATGAACCACGGCCCCAGTGCCGTCACGGAGCTCAAGGAGCAGTTGA
AGGAAGGCATCATGACCAAGGCCACAACTGCTTCTTCTTGAGACAAACTA
AGGAAAAAGTATTCGAAAATGCCGCATGAACATTTTTTTGAATTTCGAAT
GGGGGGAGGCGAGGCCCGTGACGCGTGCGTAGACAGGGTGCACCCCGACA
GGACAAAAAGTGGAAAGGGAAGATGAAAATGCATGTCACCGGCAGA
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Coding sequence (CDS) from alignment at chr22:414580..416925-

>NO22G01400.2 ID=NO22G01400.2|Name=NO22G01400.2|organism=Nannochloropsis oceanica|type=CDS|length=750bp|location=Sequence derived from alignment at chr22:414580..416925- (Nannochloropsis oceanica)
ATGCCCTTCTCATGCTGTTGCCTGCAGTGTGTGGACACTTCAACTATGGG
CATTCAAGAACGCTTCGGTAATTTTGTCGGCATTTTGCCTCCGGGACTGA
ATTGCATCATGTGGCCGATCGACAACGTGGTGGGCCGTGTGAGTGCGCGG
GTCCAGCAGCTGGTTTGTGACTGCGGCACCAAGACCAAGGATAATGTCTT
TGTATCCGTGCAAGTGATCGTCCAGTACCAAGTTATTGTCACGCAAGCCT
ACGATGCTTACTATAAGCTCACTGATCCCAACCTCCAAATTCGCTCGTAC
GTAGAGGACATCGTGCGCTCCACTGTGCCAAGGATGGAGTTGGACTCGGC
ATTTGAGGCGAAAGAAGAGCTTGCGCACGCCATCCGCGACTCGCTGCAGC
AAACCATGGGGACGTACGGGTACACCATCATCCAGAGCCTGGTGGTGGAC
ATTCGGGTGGACGAGAAGGTCAAGACGGCCATGAATGAGATTAACGCTGC
TAAGCGTTTGAGGGAGGCGGCGGCCGAGAAGGCAGAGGCGGATAAAATCG
TGCAGGTCAAGGCCGCGGAAGCCTCTGCCGAGAGCAAATACCTCTCGGGG
ATGGGCATCGCGCGGGAGAGGAAGGCGATCGTGGATGGCCTACGGGGAAG
CGTGGAGGAGTTCTCGGAGGTGGTGGATGGAGCCACGCCGAAGGATGTGA
TGGATTTAATTTTGCTGACGCAGTACTTCGATATGCTCAAGGTATGCTAG
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Synonyms
Publications