NO22G01200.1, NO22G01200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01200.1
Unique NameNO22G01200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1440
Alignment locationchr22:355086..356525 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:355086..356525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G01200.1 vs.
Match: EWM21473.1 (embryogenesis-associated protein emb8 [Nannochloropsis gaditana])

HSP 1 Score: 638.3 bits (1645), Expect = 2.000e-179
Identity = 317/462 (68.61%), Postives = 370/462 (80.09%), Query Frame = 0 
Query:    3 ELEHQQQLQSFPAPLYPSSSTSPGSVAMAWLGRNGENLRRVLRDLTIKGQQMPRSRKAATALLVGLLATLYYGRSKDELQVHTQRTEMTEAIMALLSLDESSAFKSTWATHNGHIATLHGYLRPQPPCLPCTQEIVHTDDGGHFALEWYSERVGASAVTAANTRKVSMTALREDLRTRPIVLLLHGVNDSGQHSYMRHLAHVVCTKKGWRAVCMTYRGCGTLSLTSPQCYDAANTADIALAVDTIRARFPAASLFLVGFSLGANIMVKYLGEEGPRAVGRIFGAVAISNPWAFHPQIESLHYTNKPGSFHRISAWVYSILVAHEYKKYVRRHKNQLRERLKELQRPLESMHTLRELDENVTVPLNGWRDLNHYMTAASSSEYIEGVAIPLLGLNALDDPLVSREALEHTVAKASKNPNVILVNTTRGGHIGWGGQARTASWAENLTVEFIHAAAKVQGLLLD 465
            E+E +QQL      L PSSS       ++   R+ E LR  L  L  + Q+   SRKAA+AL +G+L  LY   SKDE+ V+ QR EMTE IM  LSLD  SAFKSTWATHNGH +TL GYLRPQPPCLPCT+E+++ DDGGHFALEW +ERV  S   +A + + +M  L EDLRTRPIV +LHGVNDSGQH YMRHLAHVVCT+KGWRAVCMTYRGCG+LSLTS Q YDAANT D+ALAV+TI ARFPAA LFLVGFSLGANIMVKYLGE+G R   R++GAVAISNPWAFHP +ESLHYT+KP S  RI AW+YS LVA+EYKKYVRRH+ QL +RLK LQRPLESMHTLR+LDEN+TVPLNGW+DL HYMT+ASSSE++  V +PLLG+NALDDPLVSREAL HT+ +AS+NPNVILV TTRGGHIGWGGQA+TASWAENL V+F+ A A++Q  + D
Sbjct:    5 EVEPRQQL------LPPSSSAPSAEHFLSPSFRSLERLRAALDQLGEELQRRAPSRKAASALALGVLTALYLRWSKDEVHVYAQRNEMTEIIMVFLSLDAKSAFKSTWATHNGHFSTLQGYLRPQPPCLPCTRELIYADDGGHFALEWLNERVSDSLEASARSPE-NMLGLAEDLRTRPIVCILHGVNDSGQHPYMRHLAHVVCTRKGWRAVCMTYRGCGSLSLTSAQAYDAANTGDVALAVETICARFPAAPLFLVGFSLGANIMVKYLGEQGARVRQRVWGAVAISNPWAFHPHLESLHYTSKPRSLRRIPAWIYSFLVAYEYKKYVRRHRAQLADRLKALQRPLESMHTLRDLDENITVPLNGWKDLEHYMTSASSSEWLRHVEVPLLGVNALDDPLVSREALTHTIERASRNPNVILVTTTRGGHIGWGGQAKTASWAENLCVDFLQACARMQDTMGD 459
The following BLAST results are available for this feature:
BLAST of NO22G01200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21473.12.000e-17968.61embryogenesis-associated protein emb8 [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01200NO22G01200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01200.1NO22G01200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01200.1.cds1NO22G01200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01200.1 ID=NO22G01200.1|Name=NO22G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1440bp
ATGGTCGAATTAGAGCACCAGCAACAACTCCAGTCCTTTCCAGCCCCATT
GTATCCCTCCTCATCAACATCCCCTGGCAGTGTAGCGATGGCCTGGCTGG
GCCGTAACGGGGAAAATTTGCGCCGCGTGCTAAGGGACCTCACCATCAAG
GGCCAGCAGATGCCGCGGAGTCGCAAGGCTGCGACGGCGTTGCTGGTCGG
CCTACTGGCTACCTTGTACTATGGGAGGAGTAAGGACGAGCTTCAGGTGC
ATACACAACGGACGGAAATGACGGAAGCTATCATGGCCTTGCTAAGCCTC
GATGAGTCGTCGGCGTTCAAAAGTACTTGGGCGACGCATAATGGCCACAT
AGCAACGTTGCATGGCTATCTACGGCCCCAACCCCCTTGCTTACCTTGCA
CCCAAGAAATTGTGCATACAGATGACGGGGGCCACTTTGCATTGGAATGG
TACAGTGAGCGAGTGGGGGCGTCGGCGGTAACAGCAGCCAACACAAGGAA
GGTGAGTATGACCGCACTCCGCGAGGATTTGCGGACGCGACCTATCGTCC
TGCTTCTTCACGGCGTGAACGATAGCGGACAGCATTCGTACATGCGTCAT
TTAGCTCACGTGGTCTGCACAAAAAAAGGATGGCGAGCCGTATGCATGAC
CTACCGAGGCTGTGGTACCTTGTCCTTGACTTCGCCACAATGCTATGATG
CTGCCAACACGGCAGACATCGCCCTGGCCGTAGACACAATCCGAGCGCGT
TTTCCTGCCGCATCTTTGTTCCTGGTGGGCTTTTCCCTTGGCGCAAATAT
CATGGTCAAGTACTTGGGCGAAGAAGGGCCTCGGGCTGTGGGCAGGATCT
TTGGGGCGGTCGCGATTTCAAATCCGTGGGCATTTCATCCCCAGATTGAG
TCTTTGCATTACACCAACAAACCTGGCAGCTTCCATCGCATTTCGGCCTG
GGTCTACTCCATCTTGGTGGCACACGAGTACAAGAAATACGTGCGTCGAC
ACAAGAATCAATTGAGAGAGCGTCTGAAGGAGCTGCAGCGGCCACTAGAG
AGCATGCACACGCTGCGCGAGCTAGACGAAAACGTGACAGTGCCACTGAA
TGGTTGGCGAGACTTGAATCATTACATGACTGCAGCGTCAAGCTCTGAGT
ATATTGAAGGGGTGGCGATCCCGTTGCTGGGCCTTAATGCCTTGGACGAT
CCTCTCGTGAGCCGCGAGGCTCTAGAGCACACAGTTGCGAAAGCGAGCAA
GAATCCGAATGTGATCCTTGTGAATACCACCCGGGGCGGGCATATAGGCT
GGGGAGGACAGGCTAGGACGGCGAGCTGGGCGGAGAACTTGACCGTGGAG
TTCATACATGCGGCTGCGAAGGTGCAGGGCTTGTTGCTGGACAGGGAAGA
GCCAGAAAAGGAAATTGAGAGGCCACACGCGCGCTTGTGA
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protein sequence of NO22G01200.1

>NO22G01200.1-protein ID=NO22G01200.1-protein|Name=NO22G01200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=480bp
MVELEHQQQLQSFPAPLYPSSSTSPGSVAMAWLGRNGENLRRVLRDLTIK
GQQMPRSRKAATALLVGLLATLYYGRSKDELQVHTQRTEMTEAIMALLSL
DESSAFKSTWATHNGHIATLHGYLRPQPPCLPCTQEIVHTDDGGHFALEW
YSERVGASAVTAANTRKVSMTALREDLRTRPIVLLLHGVNDSGQHSYMRH
LAHVVCTKKGWRAVCMTYRGCGTLSLTSPQCYDAANTADIALAVDTIRAR
FPAASLFLVGFSLGANIMVKYLGEEGPRAVGRIFGAVAISNPWAFHPQIE
SLHYTNKPGSFHRISAWVYSILVAHEYKKYVRRHKNQLRERLKELQRPLE
SMHTLRELDENVTVPLNGWRDLNHYMTAASSSEYIEGVAIPLLGLNALDD
PLVSREALEHTVAKASKNPNVILVNTTRGGHIGWGGQARTASWAENLTVE
FIHAAAKVQGLLLDREEPEKEIERPHARL*
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mRNA from alignment at chr22:355086..356525-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01200.1 ID=NO22G01200.1|Name=NO22G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1440bp|location=Sequence derived from alignment at chr22:355086..356525- (Nannochloropsis oceanica)
ATGGTCGAATTAGAGCACCAGCAACAACTCCAGTCCTTTCCAGCCCCATT
GTATCCCTCCTCATCAACATCCCCTGGCAGTGTAGCGATGGCCTGGCTGG
GCCGTAACGGGGAAAATTTGCGCCGCGTGCTAAGGGACCTCACCATCAAG
GGCCAGCAGATGCCGCGGAGTCGCAAGGCTGCGACGGCGTTGCTGGTCGG
CCTACTGGCTACCTTGTACTATGGGAGGAGTAAGGACGAGCTTCAGGTGC
ATACACAACGGACGGAAATGACGGAAGCTATCATGGCCTTGCTAAGCCTC
GATGAGTCGTCGGCGTTCAAAAGTACTTGGGCGACGCATAATGGCCACAT
AGCAACGTTGCATGGCTATCTACGGCCCCAACCCCCTTGCTTACCTTGCA
CCCAAGAAATTGTGCATACAGATGACGGGGGCCACTTTGCATTGGAATGG
TACAGTGAGCGAGTGGGGGCGTCGGCGGTAACAGCAGCCAACACAAGGAA
GGTGAGTATGACCGCACTCCGCGAGGATTTGCGGACGCGACCTATCGTCC
TGCTTCTTCACGGCGTGAACGATAGCGGACAGCATTCGTACATGCGTCAT
TTAGCTCACGTGGTCTGCACAAAAAAAGGATGGCGAGCCGTATGCATGAC
CTACCGAGGCTGTGGTACCTTGTCCTTGACTTCGCCACAATGCTATGATG
CTGCCAACACGGCAGACATCGCCCTGGCCGTAGACACAATCCGAGCGCGT
TTTCCTGCCGCATCTTTGTTCCTGGTGGGCTTTTCCCTTGGCGCAAATAT
CATGGTCAAGTACTTGGGCGAAGAAGGGCCTCGGGCTGTGGGCAGGATCT
TTGGGGCGGTCGCGATTTCAAATCCGTGGGCATTTCATCCCCAGATTGAG
TCTTTGCATTACACCAACAAACCTGGCAGCTTCCATCGCATTTCGGCCTG
GGTCTACTCCATCTTGGTGGCACACGAGTACAAGAAATACGTGCGTCGAC
ACAAGAATCAATTGAGAGAGCGTCTGAAGGAGCTGCAGCGGCCACTAGAG
AGCATGCACACGCTGCGCGAGCTAGACGAAAACGTGACAGTGCCACTGAA
TGGTTGGCGAGACTTGAATCATTACATGACTGCAGCGTCAAGCTCTGAGT
ATATTGAAGGGGTGGCGATCCCGTTGCTGGGCCTTAATGCCTTGGACGAT
CCTCTCGTGAGCCGCGAGGCTCTAGAGCACACAGTTGCGAAAGCGAGCAA
GAATCCGAATGTGATCCTTGTGAATACCACCCGGGGCGGGCATATAGGCT
GGGGAGGACAGGCTAGGACGGCGAGCTGGGCGGAGAACTTGACCGTGGAG
TTCATACATGCGGCTGCGAAGGTGCAGGGCTTGTTGCTGGACAGGGAAGA
GCCAGAAAAGGAAATTGAGAGGCCACACGCGCGCTTGTGA
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Coding sequence (CDS) from alignment at chr22:355086..356525-

>NO22G01200.1 ID=NO22G01200.1|Name=NO22G01200.1|organism=Nannochloropsis oceanica|type=CDS|length=1440bp|location=Sequence derived from alignment at chr22:355086..356525- (Nannochloropsis oceanica)
ATGGTCGAATTAGAGCACCAGCAACAACTCCAGTCCTTTCCAGCCCCATT
GTATCCCTCCTCATCAACATCCCCTGGCAGTGTAGCGATGGCCTGGCTGG
GCCGTAACGGGGAAAATTTGCGCCGCGTGCTAAGGGACCTCACCATCAAG
GGCCAGCAGATGCCGCGGAGTCGCAAGGCTGCGACGGCGTTGCTGGTCGG
CCTACTGGCTACCTTGTACTATGGGAGGAGTAAGGACGAGCTTCAGGTGC
ATACACAACGGACGGAAATGACGGAAGCTATCATGGCCTTGCTAAGCCTC
GATGAGTCGTCGGCGTTCAAAAGTACTTGGGCGACGCATAATGGCCACAT
AGCAACGTTGCATGGCTATCTACGGCCCCAACCCCCTTGCTTACCTTGCA
CCCAAGAAATTGTGCATACAGATGACGGGGGCCACTTTGCATTGGAATGG
TACAGTGAGCGAGTGGGGGCGTCGGCGGTAACAGCAGCCAACACAAGGAA
GGTGAGTATGACCGCACTCCGCGAGGATTTGCGGACGCGACCTATCGTCC
TGCTTCTTCACGGCGTGAACGATAGCGGACAGCATTCGTACATGCGTCAT
TTAGCTCACGTGGTCTGCACAAAAAAAGGATGGCGAGCCGTATGCATGAC
CTACCGAGGCTGTGGTACCTTGTCCTTGACTTCGCCACAATGCTATGATG
CTGCCAACACGGCAGACATCGCCCTGGCCGTAGACACAATCCGAGCGCGT
TTTCCTGCCGCATCTTTGTTCCTGGTGGGCTTTTCCCTTGGCGCAAATAT
CATGGTCAAGTACTTGGGCGAAGAAGGGCCTCGGGCTGTGGGCAGGATCT
TTGGGGCGGTCGCGATTTCAAATCCGTGGGCATTTCATCCCCAGATTGAG
TCTTTGCATTACACCAACAAACCTGGCAGCTTCCATCGCATTTCGGCCTG
GGTCTACTCCATCTTGGTGGCACACGAGTACAAGAAATACGTGCGTCGAC
ACAAGAATCAATTGAGAGAGCGTCTGAAGGAGCTGCAGCGGCCACTAGAG
AGCATGCACACGCTGCGCGAGCTAGACGAAAACGTGACAGTGCCACTGAA
TGGTTGGCGAGACTTGAATCATTACATGACTGCAGCGTCAAGCTCTGAGT
ATATTGAAGGGGTGGCGATCCCGTTGCTGGGCCTTAATGCCTTGGACGAT
CCTCTCGTGAGCCGCGAGGCTCTAGAGCACACAGTTGCGAAAGCGAGCAA
GAATCCGAATGTGATCCTTGTGAATACCACCCGGGGCGGGCATATAGGCT
GGGGAGGACAGGCTAGGACGGCGAGCTGGGCGGAGAACTTGACCGTGGAG
TTCATACATGCGGCTGCGAAGGTGCAGGGCTTGTTGCTGGACAGGGAAGA
GCCAGAAAAGGAAATTGAGAGGCCACACGCGCGCTTGTGA
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Synonyms
Publications