NO22G01120.1, NO22G01120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01120.1
Unique NameNO22G01120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length432
Alignment locationchr22:343010..343441 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:343010..343441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G01120.1 vs.
Match: EWM21448.1 (Golgin subfamily A member 7/ERF4 [Nannochloropsis gaditana])

HSP 1 Score: 221.1 bits (562), Expect = 2.200e-54
Identity = 102/142 (71.83%), Postives = 117/142 (82.39%), Query Frame = 0 
Query:    1 MTYDLARLAPPESLARPRKEVASLVATGLRFINGVSSSYDTTFPPALAGVMSETDFVEAVGRVNNVLVMYWPCTMCFVCGYVLSPVTLGLSFGCPNMCIQEAEHYARRELEYLNHSEAFRNAGMVWSLRKSFLQSWLVIELP 143
            M ++  R APPESLARPRKEVA L ATGLRFINGVSSSYDTTFPP L  V+SE+ F+EA+GR+NNVL MYWPCT CF+CGYV SPVTLGLS  CP +C+ EAE + ++ELE LNHS  FR+ GMVW LRKS LQSW+VIELP
Sbjct:    1 MVFNAPRRAPPESLARPRKEVALLRATGLRFINGVSSSYDTTFPPVLENVLSESAFIEAIGRLNNVLAMYWPCTACFLCGYVFSPVTLGLSLACPRICVGEAEKHGQQELEQLNHSHLFRSLGMVWGLRKSLLQSWIVIELP 142
The following BLAST results are available for this feature:
BLAST of NO22G01120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21448.12.200e-5471.83Golgin subfamily A member 7/ERF4 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01120NO22G01120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01120.1NO22G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01120.1.cds1NO22G01120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01120.1 ID=NO22G01120.1|Name=NO22G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=432bp
ATGACGTACGATCTTGCGCGGCTGGCGCCGCCCGAGTCTTTGGCCAGGCC
ACGGAAAGAAGTGGCCTCGCTAGTCGCCACGGGGCTGCGCTTTATCAATG
GCGTTTCCTCCTCCTACGATACGACCTTCCCACCCGCACTCGCAGGGGTA
ATGAGCGAAACTGATTTCGTGGAAGCGGTGGGGAGGGTGAACAATGTATT
AGTCATGTACTGGCCGTGCACGATGTGCTTTGTCTGTGGGTATGTCCTGA
GCCCTGTTACCTTAGGACTTTCTTTTGGATGCCCTAACATGTGTATCCAA
GAGGCGGAGCATTACGCGCGAAGGGAGCTGGAGTACTTGAATCACTCGGA
AGCCTTTCGAAACGCAGGCATGGTATGGAGCTTGCGCAAGAGTTTTTTGC
AGTCGTGGCTGGTGATCGAGTTGCCTTCGTGA
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protein sequence of NO22G01120.1

>NO22G01120.1-protein ID=NO22G01120.1-protein|Name=NO22G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MTYDLARLAPPESLARPRKEVASLVATGLRFINGVSSSYDTTFPPALAGV
MSETDFVEAVGRVNNVLVMYWPCTMCFVCGYVLSPVTLGLSFGCPNMCIQ
EAEHYARRELEYLNHSEAFRNAGMVWSLRKSFLQSWLVIELPS*
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mRNA from alignment at chr22:343010..343441-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01120.1 ID=NO22G01120.1|Name=NO22G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=432bp|location=Sequence derived from alignment at chr22:343010..343441- (Nannochloropsis oceanica)
ATGACGTACGATCTTGCGCGGCTGGCGCCGCCCGAGTCTTTGGCCAGGCC
ACGGAAAGAAGTGGCCTCGCTAGTCGCCACGGGGCTGCGCTTTATCAATG
GCGTTTCCTCCTCCTACGATACGACCTTCCCACCCGCACTCGCAGGGGTA
ATGAGCGAAACTGATTTCGTGGAAGCGGTGGGGAGGGTGAACAATGTATT
AGTCATGTACTGGCCGTGCACGATGTGCTTTGTCTGTGGGTATGTCCTGA
GCCCTGTTACCTTAGGACTTTCTTTTGGATGCCCTAACATGTGTATCCAA
GAGGCGGAGCATTACGCGCGAAGGGAGCTGGAGTACTTGAATCACTCGGA
AGCCTTTCGAAACGCAGGCATGGTATGGAGCTTGCGCAAGAGTTTTTTGC
AGTCGTGGCTGGTGATCGAGTTGCCTTCGTGA
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Coding sequence (CDS) from alignment at chr22:343010..343441-

>NO22G01120.1 ID=NO22G01120.1|Name=NO22G01120.1|organism=Nannochloropsis oceanica|type=CDS|length=432bp|location=Sequence derived from alignment at chr22:343010..343441- (Nannochloropsis oceanica)
ATGACGTACGATCTTGCGCGGCTGGCGCCGCCCGAGTCTTTGGCCAGGCC
ACGGAAAGAAGTGGCCTCGCTAGTCGCCACGGGGCTGCGCTTTATCAATG
GCGTTTCCTCCTCCTACGATACGACCTTCCCACCCGCACTCGCAGGGGTA
ATGAGCGAAACTGATTTCGTGGAAGCGGTGGGGAGGGTGAACAATGTATT
AGTCATGTACTGGCCGTGCACGATGTGCTTTGTCTGTGGGTATGTCCTGA
GCCCTGTTACCTTAGGACTTTCTTTTGGATGCCCTAACATGTGTATCCAA
GAGGCGGAGCATTACGCGCGAAGGGAGCTGGAGTACTTGAATCACTCGGA
AGCCTTTCGAAACGCAGGCATGGTATGGAGCTTGCGCAAGAGTTTTTTGC
AGTCGTGGCTGGTGATCGAGTTGCCTTCGTGA
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Synonyms
Publications