NO22G00960.1, NO22G00960.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO22G00960.1
Unique Name	NO22G00960.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1494
Alignment location	chr22:302091..304210 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr22	genome	chr22:302091..304210 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO22G00960.1 vs.
Match: EWM21443.1 (kynurenine-oxoglutarate transaminase [Nannochloropsis gaditana])

HSP 1 Score: 724.9 bits (1870), Expect = 1.700e-205
Identity = 364/485 (75.05%), Postives = 406/485 (83.71%), Query Frame = 0

Query:    1 MLKTVGFVRTSFILPCAPGPGSCASFRPRAVVPPSSLASLFTSSPHGFHRHMSSEEEFDSGPADRLKGFEKPTVWQEFTPLAAQVKAVNLGQGFPDWPTPSFCKSAAINAIESNLNQYCRSGGLPALTSALAHHYSPLFERELNAEKEVTVSVGVSEGLFAAIHSLVNPGDEVILIEPAFDIYAAQIQMAGGTCVHVPLRPPSSSISFSPSSSTSWHLDWGELSAAFSPRTRLLLLNTPQNPTGKVFTREELEKISSLVQAHPRALVLSDEVYENITFDEHQHTRLATLPGMWERTLTLSSAGKTFSVTGWKIGWLIGPERLIGGVMCCNQWVQFSVATPLQAAVAEMLTKAKEPYEGFPSYYAWLKEEYSRKRSLLIDALTTAGLKPFVPEGGFFIVADTSNITVPSSYLWETTPASPSPMSRDWAFCRFMTLEAGVAAIPPSAFYKEGHKKLAENHARFAFCKADESILEAKTRFGRWKKEGE 486
            MLK   F R S++L  +    S  S+  R +VP  S   L T       R MSSE+ FD GPADRLKGFEKPTVWQEFTPLAAQ++AVNLGQGFPDWPTP FCK+AA+ AIE N NQYCRS GLP L SALA HYSPLF R L+ + EVTVSVGVSEGLFAAIHSLVNPGDEVILIEPAFDIYAAQ++MAGGTCV+VPLRPPS      PSSST W LDWGE++AAF+PRTRLLLLNTPQNPTGKVF R EL+K++ LV+AHPRALVLSDEVYEN+T+  H+H RLATLPGMWERTLTLSSAGKTF VTGWKIGWLIGP  LI GVMCCNQ+VQFSVATPLQAAVAEML +A+EPY  FPSYYAWL++EY RKR+LL+DAL TAGL+P VPEGGFFI+ADTSNI VP  YL E+TPASP+PMSRDWAFCR++TLEAGVAAIPPSAFYKE HK LA+NHARFAFCKAD SI+EAK RF RW+ + E
Sbjct:    1 MLKISAFARVSWLL--SGWASSLPSYHRRTLVP--SFTRLLT-------RQMSSED-FDFGPADRLKGFEKPTVWQEFTPLAAQMQAVNLGQGFPDWPTPDFCKTAAVRAIEENHNQYCRSAGLPDLASALATHYSPLFGRTLDPDTEVTVSVGVSEGLFAAIHSLVNPGDEVILIEPAFDIYAAQVKMAGGTCVYVPLRPPS------PSSST-WSLDWGEVAAAFTPRTRLLLLNTPQNPTGKVFARSELQKLADLVRAHPRALVLSDEVYENLTYPGHEHVRLATLPGMWERTLTLSSAGKTFCVTGWKIGWLIGPTHLIRGVMCCNQYVQFSVATPLQAAVAEMLRRAQEPYMEFPSYYAWLRDEYMRKRTLLVDALRTAGLEPIVPEGGFFIIADTSNIQVPPRYLGESTPASPNPMSRDWAFCRYLTLEAGVAAIPPSAFYKEEHKHLAKNHARFAFCKADASIVEAKARFLRWRGKDE 466

The following BLAST results are available for this feature:

BLAST of NO22G00960.1 vs.

BLAST of NO22G00960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM21443.1	1.700e-205	75.05	kynurenine-oxoglutarate transaminase [Nannochlorop...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO22G00960	NO22G00960	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO22G00960.1	NO22G00960.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO22G00960.1.cds1	NO22G00960.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00960.1.cds2	NO22G00960.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00960.1.cds3	NO22G00960.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00960.1.cds4	NO22G00960.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00960.1.cds5	NO22G00960.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr22:302091..304210-
coding sequence from alignment at chr22:302091..304210-

mRNA sequence

>NO22G00960.1 ID=NO22G00960.1|Name=NO22G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1494bp
ATGCTCAAGACGGTAGGATTTGTGAGGACTTCCTTCATTCTTCCTTGTGC
GCCGGGCCCGGGTAGCTGTGCCTCCTTTCGCCCCCGCGCGGTCGTCCCCC
CGTCTTCCCTGGCCTCACTGTTCACTAGTTCCCCGCACGGCTTTCACAGG
CACATGAGTTCGGAGGAGGAGTTTGATTCTGGTCCTGCAGACCGCTTGAA
GGGCTTCGAGAAACCGACCGTCTGGCAAGAATTCACCCCCCTGGCCGCCC
AGGTCAAGGCCGTTAACCTCGGCCAAGGATTCCCCGATTGGCCCACCCCA
TCTTTCTGCAAGTCCGCGGCGATCAACGCGATCGAGAGCAATCTTAACCA
ATATTGTCGCTCCGGGGGGTTACCCGCCTTGACGTCTGCTCTCGCCCACC
ACTACTCCCCTCTGTTCGAACGAGAATTAAATGCCGAGAAGGAAGTGACC
GTGTCTGTGGGGGTATCGGAAGGTCTTTTTGCGGCCATTCACTCATTAGT
AAACCCGGGGGATGAGGTCATTTTGATCGAGCCCGCATTTGACATCTATG
CCGCGCAGATCCAAATGGCTGGCGGTACCTGCGTCCATGTCCCTCTCCGT
CCTCCCTCCTCCTCCATCTCCTTCTCTCCTTCCTCCTCCACCTCCTGGCA
CCTAGACTGGGGTGAACTTTCTGCGGCATTTTCCCCTCGCACACGCCTTC
TCCTTCTCAACACCCCCCAGAATCCGACGGGAAAAGTATTTACCCGCGAA
GAGCTCGAAAAGATTTCCTCCCTCGTCCAGGCTCACCCTCGCGCCCTCGT
CCTCTCCGACGAGGTTTACGAAAACATCACATTCGACGAACACCAGCACA
CCCGCCTGGCCACCTTGCCGGGAATGTGGGAGCGAACATTGACGCTGTCT
TCGGCGGGGAAAACGTTCAGCGTGACGGGGTGGAAGATAGGCTGGTTGAT
CGGCCCAGAGAGATTGATTGGCGGCGTCATGTGCTGTAACCAGTGGGTAC
AATTTTCGGTGGCGACTCCTCTACAGGCAGCGGTAGCGGAGATGTTGACA
AAAGCGAAGGAGCCGTATGAAGGTTTTCCCTCTTACTATGCGTGGCTGAA
AGAGGAATACTCGCGCAAGCGCTCTCTTCTAATCGATGCCCTGACAACCG
CGGGTCTCAAGCCCTTCGTCCCCGAAGGCGGATTTTTCATAGTCGCAGAC
ACAAGCAACATAACCGTTCCCTCCTCCTATTTGTGGGAAACGACCCCTGC
CTCCCCCTCGCCCATGTCACGGGATTGGGCATTTTGTCGTTTTATGACGC
TAGAAGCAGGCGTGGCTGCTATTCCGCCTTCGGCCTTCTATAAAGAAGGG
CATAAAAAGCTTGCAGAAAATCATGCGAGGTTTGCCTTTTGTAAGGCGGA
CGAGAGCATTCTCGAGGCCAAGACCCGATTTGGCAGGTGGAAGAAGGAGG
GAGAGAGGGAGAGAGAGGATGATGGTGGAGATGGAAAGGCCTAG

protein sequence of NO22G00960.1

>NO22G00960.1-protein ID=NO22G00960.1-protein|Name=NO22G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=498bp
MLKTVGFVRTSFILPCAPGPGSCASFRPRAVVPPSSLASLFTSSPHGFHR
HMSSEEEFDSGPADRLKGFEKPTVWQEFTPLAAQVKAVNLGQGFPDWPTP
SFCKSAAINAIESNLNQYCRSGGLPALTSALAHHYSPLFERELNAEKEVT
VSVGVSEGLFAAIHSLVNPGDEVILIEPAFDIYAAQIQMAGGTCVHVPLR
PPSSSISFSPSSSTSWHLDWGELSAAFSPRTRLLLLNTPQNPTGKVFTRE
ELEKISSLVQAHPRALVLSDEVYENITFDEHQHTRLATLPGMWERTLTLS
SAGKTFSVTGWKIGWLIGPERLIGGVMCCNQWVQFSVATPLQAAVAEMLT
KAKEPYEGFPSYYAWLKEEYSRKRSLLIDALTTAGLKPFVPEGGFFIVAD
TSNITVPSSYLWETTPASPSPMSRDWAFCRFMTLEAGVAAIPPSAFYKEG
HKKLAENHARFAFCKADESILEAKTRFGRWKKEGEREREDDGGDGKA*

mRNA from alignment at chr22:302091..304210-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO22G00960.1 ID=NO22G00960.1|Name=NO22G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=2120bp|location=Sequence derived from alignment at chr22:302091..304210- (Nannochloropsis oceanica)
ATGCTCAAGACGGTAGGATTTGTGAGGACTTCCTTCATTCTTCCTTGTGC
GCCGGGCCCGGGTAGCTGTGCCTCCTTTCGCCCCCGCGCGGTCGTCCCCC
CGTCTTCCCTGGCCTCACTGTTCACTAGGTAGGAACGGCAGAATTGGCAC
CATCTGTAGAGATCTTGATGGACAGTCACGCTTGACCCATTAAATCGGAG
GGTAATCGGACATGCTTGCCGCAGACAGGGCTGGAAACTGCGCGGCCTCG
CCTGTCTGATTTCTTCCACGTCATTCATTATACGCCCCCGTTTCACCCAG
TTCCCCGCACGGCTTTCACAGGCACATGAGTTCGGAGGAGGAGTTTGATT
CTGGTCCTGCAGACCGCTTGAAGGGCTTCGAGGTACATGCACAATGGTGG
GAGGGCGGAGAGGGTGTCGTTGGATGCATTCTTCATGCTCTTTCTGTTGT
CTCTTAATTGTCTCCTACTCTCCCTCGTGCAAGTCGTTTTTCTTGAAGCA
AACATGTTTGTAGGTACCTGTGCCGCGACATTTTCAATCCGCCTGGCACC
CTCCCACTCATGCGTACGCACCCATGGATGAACAGAAACCGACCGTCTGG
CAAGAATTCACCCCCCTGGCCGCCCAGGTCAAGGCCGTTAACCTCGGCCA
AGGATTCCCCGATTGGCCCACCCCATCTTTCTGCAAGTCCGCGGCGATCA
ACGCGATCGAGAGCAATCTTAACCAATATTGTCGCTCCGGGGGGTTACCC
GCCTTGACGTCTGCTCTCGCCCACCACTACTCCCCTCTGTTCGAACGAGA
ATTAAATGCCGAGAAGGAAGTGACCGTGTCTGTGGGGGTATCGGAAGGTC
TTTTTGCGGCCATTCACTCATTAGTAAACCCGGGGGATGAGGTCATTTTG
ATCGAGCCCGCATTTGACATCTATGCCGCGCAGGTAGGGAATGAGGGAAG
GAGGGGAGGGAGGAAGGGAGAAGGGTTGGCGTTTCAGGTCGCAGCCCATG
GTTAAGCTAAACACTTACAAGATATCGCACCATTTTCTCTTCCCCCCTCC
TTTCCTCCCATTCTGTTTCCTTTTTTTAGATCCAAATGGCTGGCGGTACC
TGCGTCCATGTCCCTCTCCGTCCTCCCTCCTCCTCCATCTCCTTCTCTCC
TTCCTCCTCCACCTCCTGGCACCTAGACTGGGGTGAACTTTCTGCGGCAT
TTTCCCCTCGCACACGCCTTCTCCTTCTCAACACCCCCCAGAATCCGACG
GGAAAAGTATTTACCCGCGAAGAGCTCGAAAAGATTTCCTCCCTCGTCCA
GGCTCACCCTCGCGCCCTCGTCCTCTCCGACGAGGTTTACGAAAACATCA
CATTCGACGAACACCAGCACACCCGCCTGGCCACCTTGCCGGGAATGTGG
GAGCGAACATTGACGCTGTCTTCGGCGGGGAAAACGTTCAGCGTGACGGG
GTGGAAGATAGGCTGGTTGATCGGCCCAGAGAGATTGATTGGCGGCGTCA
TGTGCTGTAACCAGTGGGTACAATTTTCGGTGGCGACTCCTCTACAGGCA
GCGGTAGCGGAGATGTTGACAAAAGCGAAGGAGCCGTATGAAGGTTTTCC
CTCTTACTATGCGTGGCTGAAAGAGGAATACTCGCGCAAGCGGTAGGAAG
GGAGGGAAAGCGGGAGGGAGGAAGGGACTGATCTCACATCGCTTCGCTCA
TTCCAGCTTCTCTTTTCCTTCCTTCCCCTCCCTCCCTTCCCCCGCAGCTC
TCTTCTAATCGATGCCCTGACAACCGCGGGTCTCAAGCCCTTCGTCCCCG
AAGGCGGATTTTTCATAGTCGCAGACACAAGCAACATAACCGTTCCCTCC
TCCTATTTGTGGGAAACGACCCCTGCCTCCCCCTCGCCCATGTCACGGGA
TTGGGCATTTTGTCGTTTTATGACGCTAGAAGCAGGCGTGGCTGCTATTC
CGCCTTCGGCCTTCTATAAAGAAGGGCATAAAAAGCTTGCAGAAAATCAT
GCGAGGTTTGCCTTTTGTAAGGCGGACGAGAGCATTCTCGAGGCCAAGAC
CCGATTTGGCAGGTGGAAGAAGGAGGGAGAGAGGGAGAGAGAGGATGATG
GTGGAGATGGAAAGGCCTAG

Coding sequence (CDS) from alignment at chr22:302091..304210-

>NO22G00960.1 ID=NO22G00960.1|Name=NO22G00960.1|organism=Nannochloropsis oceanica|type=CDS|length=1494bp|location=Sequence derived from alignment at chr22:302091..304210- (Nannochloropsis oceanica)
ATGCTCAAGACGGTAGGATTTGTGAGGACTTCCTTCATTCTTCCTTGTGC
GCCGGGCCCGGGTAGCTGTGCCTCCTTTCGCCCCCGCGCGGTCGTCCCCC
CGTCTTCCCTGGCCTCACTGTTCACTAGTTCCCCGCACGGCTTTCACAGG
CACATGAGTTCGGAGGAGGAGTTTGATTCTGGTCCTGCAGACCGCTTGAA
GGGCTTCGAGAAACCGACCGTCTGGCAAGAATTCACCCCCCTGGCCGCCC
AGGTCAAGGCCGTTAACCTCGGCCAAGGATTCCCCGATTGGCCCACCCCA
TCTTTCTGCAAGTCCGCGGCGATCAACGCGATCGAGAGCAATCTTAACCA
ATATTGTCGCTCCGGGGGGTTACCCGCCTTGACGTCTGCTCTCGCCCACC
ACTACTCCCCTCTGTTCGAACGAGAATTAAATGCCGAGAAGGAAGTGACC
GTGTCTGTGGGGGTATCGGAAGGTCTTTTTGCGGCCATTCACTCATTAGT
AAACCCGGGGGATGAGGTCATTTTGATCGAGCCCGCATTTGACATCTATG
CCGCGCAGATCCAAATGGCTGGCGGTACCTGCGTCCATGTCCCTCTCCGT
CCTCCCTCCTCCTCCATCTCCTTCTCTCCTTCCTCCTCCACCTCCTGGCA
CCTAGACTGGGGTGAACTTTCTGCGGCATTTTCCCCTCGCACACGCCTTC
TCCTTCTCAACACCCCCCAGAATCCGACGGGAAAAGTATTTACCCGCGAA
GAGCTCGAAAAGATTTCCTCCCTCGTCCAGGCTCACCCTCGCGCCCTCGT
CCTCTCCGACGAGGTTTACGAAAACATCACATTCGACGAACACCAGCACA
CCCGCCTGGCCACCTTGCCGGGAATGTGGGAGCGAACATTGACGCTGTCT
TCGGCGGGGAAAACGTTCAGCGTGACGGGGTGGAAGATAGGCTGGTTGAT
CGGCCCAGAGAGATTGATTGGCGGCGTCATGTGCTGTAACCAGTGGGTAC
AATTTTCGGTGGCGACTCCTCTACAGGCAGCGGTAGCGGAGATGTTGACA
AAAGCGAAGGAGCCGTATGAAGGTTTTCCCTCTTACTATGCGTGGCTGAA
AGAGGAATACTCGCGCAAGCGCTCTCTTCTAATCGATGCCCTGACAACCG
CGGGTCTCAAGCCCTTCGTCCCCGAAGGCGGATTTTTCATAGTCGCAGAC
ACAAGCAACATAACCGTTCCCTCCTCCTATTTGTGGGAAACGACCCCTGC
CTCCCCCTCGCCCATGTCACGGGATTGGGCATTTTGTCGTTTTATGACGC
TAGAAGCAGGCGTGGCTGCTATTCCGCCTTCGGCCTTCTATAAAGAAGGG
CATAAAAAGCTTGCAGAAAATCATGCGAGGTTTGCCTTTTGTAAGGCGGA
CGAGAGCATTCTCGAGGCCAAGACCCGATTTGGCAGGTGGAAGAAGGAGG
GAGAGAGGGAGAGAGAGGATGATGGTGGAGATGGAAAGGCCTAG

Synonyms

Publications