|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr22 | genome | chr22:296337..298863 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO22G00930.1 vs.
Match: XP_005853493.1 (mitochondrion protein [Nannochloropsis gaditana CCMP526]; EKU22866.1 mitochondrion protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 665.6 bits (1716), Expect = 1.700e-187 Identity = 408/708 (57.63%), Postives = 511/708 (72.18%), Query Frame = 0
Query: 1 MLALRRRAVALTTTTIVNSSSSSGSSCSLARALSTKPPSFSRHPPPHPNAKARPLGDLKKTAPP-PTGTGAPPPPSGGPVPPTPHEPSGGLGLGTAIGMVILAGGTAVTGYYYVLADEKEKAQIEGYVAEAKAMVGLASSATTAAGADAAVETAAAAEKTKVKVEKVVHDVEEGTARASENVKAKIREASTTATNAFHDVEDKASANVHGSNGDERKRKKTEVEA---EGPAAKENGGMAAAEKQAKGALSTAKGITAHAAVENAEKLADQIMADIHERTNHKKEEEAAATAAAAATAEEASPKESSSIGKLQTDAALKHFATYEDRGKDLRFDSLTRAAEEALAQGEALRKHLEVTLLKDLSSLSTEALQHRVFQLVGELQERTKWEALRLHEAVRKAEVEVSGKYVELIAKLREESMEEVGRQARALDAEKQLAVQQVLDEKEKECKLLLEQEMASFIADATKAFEEERARDRAEIEGKAKRDLENAMYEKETAHQSLVAGRMEELDKLKAQVEALDEVFKTDTDYEHLSWKVHKVSAALLAFELALQTSLPLKKELSALKNVTKGDPVMDAVLSSLPPALDDGVFTLSELQVRFPIVQSAAREAAFVPASSPGMLGHMFGSVLAAITIKPRGLVEGAGADEVLSRAAYHVERGNLAGAVGELESMEGLVGRAVTSWVVDAKGRLVMEQAVRAMNARSAVLNASMV 705
ML+ RRRA A+ T ++ + S RALSTKPP SR P +L K PP P PPP GP PP + SGG GLG A+GM++LAGGTA TGYYYVLAD+ EK+Q+EGY+A+ K+ VGLA T A + +V+ DVE TA A+ +VK ++++A+T A+ A H VE+K + + G ++ + A +G A + G A ++ K A +G +AVENAE LA QI++DI +R KKEE+ A A + A S++G+ Q +AALKHFA YE RGK+LRFD+LTRAAEEALAQGEALR HLE TLLKDL+ LS EALQ RV QLVGELQERTKWEALRLHEAVRKAE+EVSGKYVELI KLREES+EEVGRQ+RAL+AEKQ+A+ + ++EK+K CK LLE+EM SF A+ T AFE+ERA+DRA +E +AKR+LEN +YE+ET +Q+ +AGR+EEL +LK +VEAL+ VF+TDTDYEH+SWKVH+VSAALLAFELALQ+S PL++E++AL++VTKGDPV+DAVL+ LPPA +GV T SELQVRFP+VQ AAREAAFVP SSPGM+GHMF +LAA+TI+PRGLVEG+GADE L+RAAYHVERG+LA AV ELE + GL GR V W+ DA+GRL + QA RAMNARSA+LN SMV
Sbjct: 1 MLSSRRRA-AVPTFVMLGQRWLAVSPSPYLRALSTKPPLSSRPP------------NLYKAPPPGPKAPRGNPPPPAGPEPPA-QKASGGFGLGAALGMIVLAGGTAATGYYYVLADQNEKSQMEGYLAKVKSTVGLAPPFEI-----ETPPTGDATSNRENEVKNAKGDVEAATAGAAASVKTELQKATTRASQAVHAVEEKVATALRGGKEAPTSGRENSMGASVKKGGAEDGDDGGAELSEKVKEAAGEVEG-EVRSAVENAEHLAAQIISDIEDRA--KKEEDPGAVATEEGENKTAGAPTESALGRKQAEAALKHFAGYESRGKELRFDTLTRAAEEALAQGEALRNHLEQTLLKDLAVLSNEALQLRVVQLVGELQERTKWEALRLHEAVRKAEMEVSGKYVELIRKLREESVEEVGRQSRALEAEKQVALLKAMEEKDKACKTLLEEEMRSFTANVTAAFEQERAQDRALVEAQAKRELENVLYERETGYQAALAGRLEELGRLKGEVEALEAVFETDTDYEHVSWKVHRVSAALLAFELALQSSQPLRREIAALQHVTKGDPVLDAVLAGLPPAASEGVLTPSELQVRFPMVQKAAREAAFVPESSPGMVGHMFAGLLAAVTIQPRGLVEGSGADETLARAAYHVERGHLAEAVQELEGLGGLAGRTVEDWLQDARGRLELTQAARAMNARSALLNVSMV 686
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO22G00930.1 ID=NO22G00930.1|Name=NO22G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=2527bp
AAACATAGAGTAGAGGGCTTGCTGGACCAAGTGCATCGACCGGGGGGCGA
TCGTCTGTGTCCACTCAGCTGCCCCTGGAAACTCCTCGGCAGTGCTCGCT
CGATCATTCCCTCATCATCATGCTTGCCCTCCGACGACGCGCCGTGGCAC
TGACCACCACCACCATTGTGAATTCGAGCAGTAGCAGTGGGTCATCATGT
TCATTGGCCCGGGCGCTCTCCACCAAGCCACCTTCCTTCTCCAGGCATCC
TCCTCCCCATCCCAATGCCAAGGCTCGTCCTCTTGGCGACCTCAAGAAGA
CTGCCCCGCCACCGACGGGCACCGGTGCTCCTCCTCCTCCTTCTGGAGGG
CCTGTGCCCCCTACGCCTCACGAACCATCGGGCGGCTTAGGTCTCGGCAC
CGCGATAGGGATGGTGATCTTGGCAGGCGGGACAGCCGTGACAGGGTATT
ACTACGTGCTGGCCGACGAGAAGGAGAAGGCGCAAATCGAGGGCTACGTC
GCCGAGGCTAAAGCTATGGTTGGGCTTGCTTCTTCTGCGACTACTGCTGC
TGGTGCAGATGCTGCTGTTGAGACTGCCGCTGCTGCAGAGAAGACGAAGG
TAAAAGTGGAGAAGGTAGTGCATGATGTCGAGGAGGGGACGGCGAGAGCT
TCAGAGAATGTGAAGGCAAAAATTCGGGAGGCAAGCACCACGGCCACAAA
TGCCTTTCATGACGTGGAAGATAAGGCATCTGCGAACGTGCATGGCAGTA
ATGGCGATGAGAGGAAGAGGAAGAAGACGGAGGTCGAGGCGGAGGGACCA
GCAGCAAAAGAGAACGGGGGCATGGCGGCAGCGGAGAAGCAGGCGAAGGG
AGCACTGTCCACTGCCAAAGGGATCACGGCTCACGCGGCCGTCGAAAATG
CGGAGAAGCTCGCCGACCAAATCATGGCGGACATCCATGAACGTACCAAC
CACAAGAAAGAAGAAGAAGCAGCAGCAACAGCAGCAGCAGCAGCCACCGC
GGAAGAAGCGTCGCCCAAGGAATCCTCCTCAATTGGCAAGCTCCAGACGG
ACGCGGCACTGAAACATTTCGCCACGTACGAGGACAGGGGGAAAGACTTG
CGTTTTGACTCCTTGACGCGAGCAGCCGAAGAGGCCTTAGCACAGGGAGA
AGCGTTACGGAAGCACCTGGAAGTGACTCTGCTGAAGGATTTATCTTCTC
TGAGCACGGAAGCTTTGCAGCATCGTGTTTTTCAACTAGTGGGGGAACTG
CAGGAGAGGACGAAGTGGGAGGCGCTGCGATTGCACGAAGCGGTGCGGAA
GGCTGAGGTGGAGGTGAGTGGGAAATATGTGGAACTGATCGCCAAACTCC
GAGAGGAGAGCATGGAGGAAGTGGGTCGACAAGCCCGGGCGTTGGACGCG
GAGAAACAATTGGCGGTGCAGCAGGTGTTGGACGAGAAGGAAAAAGAATG
CAAATTGCTTCTGGAACAGGAAATGGCGTCGTTTATCGCGGATGCGACCA
AGGCGTTTGAGGAGGAACGAGCGAGGGACAGGGCCGAGATAGAAGGGAAG
GCAAAGCGGGATTTGGAGAACGCTATGTATGAGAAGGAAACTGCTCACCA
ATCCCTCGTCGCCGGGCGGATGGAAGAGCTCGACAAGCTCAAGGCGCAGG
TTGAGGCCCTGGACGAGGTTTTCAAAACGGATACCGACTATGAGCACCTC
TCTTGGAAAGTCCACAAGGTCTCTGCTGCTCTCCTCGCCTTCGAGCTCGC
TCTACAAACATCCCTCCCCTTAAAAAAGGAACTCTCTGCCCTCAAGAACG
TCACGAAGGGAGACCCCGTCATGGATGCTGTGCTGTCATCCCTCCCTCCC
GCCCTTGACGACGGTGTCTTTACCCTCTCCGAGCTGCAGGTCAGGTTCCC
TATTGTGCAATCTGCAGCGCGCGAAGCTGCTTTTGTGCCCGCGTCAAGCC
CGGGGATGCTCGGCCATATGTTCGGAAGTGTCCTTGCGGCCATCACAATC
AAACCACGCGGGTTGGTCGAGGGAGCAGGGGCAGACGAGGTGCTTTCTCG
CGCGGCGTATCACGTGGAGCGGGGGAATCTGGCGGGAGCGGTTGGCGAAC
TGGAGAGCATGGAAGGCTTGGTCGGGAGGGCGGTGACAAGCTGGGTGGTA
GATGCGAAGGGCAGGTTAGTGATGGAGCAGGCAGTGAGGGCCATGAATGC
AAGGAGTGCCGTGCTGAATGCCAGTATGGTGTAAGAAAGGAGAACGAGGG
ATGGAGGGGGAGGGATGGGGAGGAGAAATGGAAACAGGAAGGGATAAAAT
GGAGGATCGGCCGGGCAGTGATAGAGAGCAGGAGAAGTGGCAAGGAGGAG
TAGGAGAGGAATTTCGTTAGAGAACGAGTGCGAGGAAGGACAAGTAGATA
CATTACTACATTGTAAGCGTCAAATTTCCATAGAGCTAGGGGAGGAGAAG
AGGAAAGGATAAAGGAGGGAAAGGCCTACGAAGAAAGAGAAGGAATAAAG
AAGAAGGGTGGTGTCATAATGACTGGA back to topprotein sequence of NO22G00930.1 >NO22G00930.1-protein ID=NO22G00930.1-protein|Name=NO22G00930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=705bp
MLALRRRAVALTTTTIVNSSSSSGSSCSLARALSTKPPSFSRHPPPHPNA
KARPLGDLKKTAPPPTGTGAPPPPSGGPVPPTPHEPSGGLGLGTAIGMVI
LAGGTAVTGYYYVLADEKEKAQIEGYVAEAKAMVGLASSATTAAGADAAV
ETAAAAEKTKVKVEKVVHDVEEGTARASENVKAKIREASTTATNAFHDVE
DKASANVHGSNGDERKRKKTEVEAEGPAAKENGGMAAAEKQAKGALSTAK
GITAHAAVENAEKLADQIMADIHERTNHKKEEEAAATAAAAATAEEASPK
ESSSIGKLQTDAALKHFATYEDRGKDLRFDSLTRAAEEALAQGEALRKHL
EVTLLKDLSSLSTEALQHRVFQLVGELQERTKWEALRLHEAVRKAEVEVS
GKYVELIAKLREESMEEVGRQARALDAEKQLAVQQVLDEKEKECKLLLEQ
EMASFIADATKAFEEERARDRAEIEGKAKRDLENAMYEKETAHQSLVAGR
MEELDKLKAQVEALDEVFKTDTDYEHLSWKVHKVSAALLAFELALQTSLP
LKKELSALKNVTKGDPVMDAVLSSLPPALDDGVFTLSELQVRFPIVQSAA
REAAFVPASSPGMLGHMFGSVLAAITIKPRGLVEGAGADEVLSRAAYHVE
RGNLAGAVGELESMEGLVGRAVTSWVVDAKGRLVMEQAVRAMNARSAVLN
ASMV* back to topmRNA from alignment at chr22:296337..298863+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO22G00930.1 ID=NO22G00930.1|Name=NO22G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=2527bp|location=Sequence derived from alignment at chr22:296337..298863+ (Nannochloropsis oceanica)
AAACATAGAGTAGAGGGCTTGCTGGACCAAGTGCATCGACCGGGGGGCGA
TCGTCTGTGTCCACTCAGCTGCCCCTGGAAACTCCTCGGCAGTGCTCGCT
CGATCATTCCCTCATCATCATGCTTGCCCTCCGACGACGCGCCGTGGCAC
TGACCACCACCACCATTGTGAATTCGAGCAGTAGCAGTGGGTCATCATGT
TCATTGGCCCGGGCGCTCTCCACCAAGCCACCTTCCTTCTCCAGGCATCC
TCCTCCCCATCCCAATGCCAAGGCTCGTCCTCTTGGCGACCTCAAGAAGA
CTGCCCCGCCACCGACGGGCACCGGTGCTCCTCCTCCTCCTTCTGGAGGG
CCTGTGCCCCCTACGCCTCACGAACCATCGGGCGGCTTAGGTCTCGGCAC
CGCGATAGGGATGGTGATCTTGGCAGGCGGGACAGCCGTGACAGGGTATT
ACTACGTGCTGGCCGACGAGAAGGAGAAGGCGCAAATCGAGGGCTACGTC
GCCGAGGCTAAAGCTATGGTTGGGCTTGCTTCTTCTGCGACTACTGCTGC
TGGTGCAGATGCTGCTGTTGAGACTGCCGCTGCTGCAGAGAAGACGAAGG
TAAAAGTGGAGAAGGTAGTGCATGATGTCGAGGAGGGGACGGCGAGAGCT
TCAGAGAATGTGAAGGCAAAAATTCGGGAGGCAAGCACCACGGCCACAAA
TGCCTTTCATGACGTGGAAGATAAGGCATCTGCGAACGTGCATGGCAGTA
ATGGCGATGAGAGGAAGAGGAAGAAGACGGAGGTCGAGGCGGAGGGACCA
GCAGCAAAAGAGAACGGGGGCATGGCGGCAGCGGAGAAGCAGGCGAAGGG
AGCACTGTCCACTGCCAAAGGGATCACGGCTCACGCGGCCGTCGAAAATG
CGGAGAAGCTCGCCGACCAAATCATGGCGGACATCCATGAACGTACCAAC
CACAAGAAAGAAGAAGAAGCAGCAGCAACAGCAGCAGCAGCAGCCACCGC
GGAAGAAGCGTCGCCCAAGGAATCCTCCTCAATTGGCAAGCTCCAGACGG
ACGCGGCACTGAAACATTTCGCCACGTACGAGGACAGGGGGAAAGACTTG
CGTTTTGACTCCTTGACGCGAGCAGCCGAAGAGGCCTTAGCACAGGGAGA
AGCGTTACGGAAGCACCTGGAAGTGACTCTGCTGAAGGATTTATCTTCTC
TGAGCACGGAAGCTTTGCAGCATCGTGTTTTTCAACTAGTGGGGGAACTG
CAGGAGAGGACGAAGTGGGAGGCGCTGCGATTGCACGAAGCGGTGCGGAA
GGCTGAGGTGGAGGTGAGTGGGAAATATGTGGAACTGATCGCCAAACTCC
GAGAGGAGAGCATGGAGGAAGTGGGTCGACAAGCCCGGGCGTTGGACGCG
GAGAAACAATTGGCGGTGCAGCAGGTGTTGGACGAGAAGGAAAAAGAATG
CAAATTGCTTCTGGAACAGGAAATGGCGTCGTTTATCGCGGATGCGACCA
AGGCGTTTGAGGAGGAACGAGCGAGGGACAGGGCCGAGATAGAAGGGAAG
GCAAAGCGGGATTTGGAGAACGCTATGTATGAGAAGGAAACTGCTCACCA
ATCCCTCGTCGCCGGGCGGATGGAAGAGCTCGACAAGCTCAAGGCGCAGG
TTGAGGCCCTGGACGAGGTTTTCAAAACGGATACCGACTATGAGCACCTC
TCTTGGAAAGTCCACAAGGTCTCTGCTGCTCTCCTCGCCTTCGAGCTCGC
TCTACAAACATCCCTCCCCTTAAAAAAGGAACTCTCTGCCCTCAAGAACG
TCACGAAGGGAGACCCCGTCATGGATGCTGTGCTGTCATCCCTCCCTCCC
GCCCTTGACGACGGTGTCTTTACCCTCTCCGAGCTGCAGGTCAGGTTCCC
TATTGTGCAATCTGCAGCGCGCGAAGCTGCTTTTGTGCCCGCGTCAAGCC
CGGGGATGCTCGGCCATATGTTCGGAAGTGTCCTTGCGGCCATCACAATC
AAACCACGCGGGTTGGTCGAGGGAGCAGGGGCAGACGAGGTGCTTTCTCG
CGCGGCGTATCACGTGGAGCGGGGGAATCTGGCGGGAGCGGTTGGCGAAC
TGGAGAGCATGGAAGGCTTGGTCGGGAGGGCGGTGACAAGCTGGGTGGTA
GATGCGAAGGGCAGGTTAGTGATGGAGCAGGCAGTGAGGGCCATGAATGC
AAGGAGTGCCGTGCTGAATGCCAGTATGGTGTAAGAAAGGAGAACGAGGG
ATGGAGGGGGAGGGATGGGGAGGAGAAATGGAAACAGGAAGGGATAAAAT
GGAGGATCGGCCGGGCAGTGATAGAGAGCAGGAGAAGTGGCAAGGAGGAG
TAGGAGAGGAATTTCGTTAGAGAACGAGTGCGAGGAAGGACAAGTAGATA
CATTACTACATTGTAAGCGTCAAATTTCCATAGAGCTAGGGGAGGAGAAG
AGGAAAGGATAAAGGAGGGAAAGGCCTACGAAGAAAGAGAAGGAATAAAG
AAGAAGGGTGGTGTCATAATGACTGGA back to topCoding sequence (CDS) from alignment at chr22:296337..298863+ >NO22G00930.1 ID=NO22G00930.1|Name=NO22G00930.1|organism=Nannochloropsis oceanica|type=CDS|length=2115bp|location=Sequence derived from alignment at chr22:296337..298863+ (Nannochloropsis oceanica)
ATGCTTGCCCTCCGACGACGCGCCGTGGCACTGACCACCACCACCATTGT
GAATTCGAGCAGTAGCAGTGGGTCATCATGTTCATTGGCCCGGGCGCTCT
CCACCAAGCCACCTTCCTTCTCCAGGCATCCTCCTCCCCATCCCAATGCC
AAGGCTCGTCCTCTTGGCGACCTCAAGAAGACTGCCCCGCCACCGACGGG
CACCGGTGCTCCTCCTCCTCCTTCTGGAGGGCCTGTGCCCCCTACGCCTC
ACGAACCATCGGGCGGCTTAGGTCTCGGCACCGCGATAGGGATGGTGATC
TTGGCAGGCGGGACAGCCGTGACAGGGTATTACTACGTGCTGGCCGACGA
GAAGGAGAAGGCGCAAATCGAGGGCTACGTCGCCGAGGCTAAAGCTATGG
TTGGGCTTGCTTCTTCTGCGACTACTGCTGCTGGTGCAGATGCTGCTGTT
GAGACTGCCGCTGCTGCAGAGAAGACGAAGGTAAAAGTGGAGAAGGTAGT
GCATGATGTCGAGGAGGGGACGGCGAGAGCTTCAGAGAATGTGAAGGCAA
AAATTCGGGAGGCAAGCACCACGGCCACAAATGCCTTTCATGACGTGGAA
GATAAGGCATCTGCGAACGTGCATGGCAGTAATGGCGATGAGAGGAAGAG
GAAGAAGACGGAGGTCGAGGCGGAGGGACCAGCAGCAAAAGAGAACGGGG
GCATGGCGGCAGCGGAGAAGCAGGCGAAGGGAGCACTGTCCACTGCCAAA
GGGATCACGGCTCACGCGGCCGTCGAAAATGCGGAGAAGCTCGCCGACCA
AATCATGGCGGACATCCATGAACGTACCAACCACAAGAAAGAAGAAGAAG
CAGCAGCAACAGCAGCAGCAGCAGCCACCGCGGAAGAAGCGTCGCCCAAG
GAATCCTCCTCAATTGGCAAGCTCCAGACGGACGCGGCACTGAAACATTT
CGCCACGTACGAGGACAGGGGGAAAGACTTGCGTTTTGACTCCTTGACGC
GAGCAGCCGAAGAGGCCTTAGCACAGGGAGAAGCGTTACGGAAGCACCTG
GAAGTGACTCTGCTGAAGGATTTATCTTCTCTGAGCACGGAAGCTTTGCA
GCATCGTGTTTTTCAACTAGTGGGGGAACTGCAGGAGAGGACGAAGTGGG
AGGCGCTGCGATTGCACGAAGCGGTGCGGAAGGCTGAGGTGGAGGTGAGT
GGGAAATATGTGGAACTGATCGCCAAACTCCGAGAGGAGAGCATGGAGGA
AGTGGGTCGACAAGCCCGGGCGTTGGACGCGGAGAAACAATTGGCGGTGC
AGCAGGTGTTGGACGAGAAGGAAAAAGAATGCAAATTGCTTCTGGAACAG
GAAATGGCGTCGTTTATCGCGGATGCGACCAAGGCGTTTGAGGAGGAACG
AGCGAGGGACAGGGCCGAGATAGAAGGGAAGGCAAAGCGGGATTTGGAGA
ACGCTATGTATGAGAAGGAAACTGCTCACCAATCCCTCGTCGCCGGGCGG
ATGGAAGAGCTCGACAAGCTCAAGGCGCAGGTTGAGGCCCTGGACGAGGT
TTTCAAAACGGATACCGACTATGAGCACCTCTCTTGGAAAGTCCACAAGG
TCTCTGCTGCTCTCCTCGCCTTCGAGCTCGCTCTACAAACATCCCTCCCC
TTAAAAAAGGAACTCTCTGCCCTCAAGAACGTCACGAAGGGAGACCCCGT
CATGGATGCTGTGCTGTCATCCCTCCCTCCCGCCCTTGACGACGGTGTCT
TTACCCTCTCCGAGCTGCAGGTCAGGTTCCCTATTGTGCAATCTGCAGCG
CGCGAAGCTGCTTTTGTGCCCGCGTCAAGCCCGGGGATGCTCGGCCATAT
GTTCGGAAGTGTCCTTGCGGCCATCACAATCAAACCACGCGGGTTGGTCG
AGGGAGCAGGGGCAGACGAGGTGCTTTCTCGCGCGGCGTATCACGTGGAG
CGGGGGAATCTGGCGGGAGCGGTTGGCGAACTGGAGAGCATGGAAGGCTT
GGTCGGGAGGGCGGTGACAAGCTGGGTGGTAGATGCGAAGGGCAGGTTAG
TGATGGAGCAGGCAGTGAGGGCCATGAATGCAAGGAGTGCCGTGCTGAAT
GCCAGTATGGTGTAA back to top
|