NO22G00860.1, NO22G00860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00860.1
Unique NameNO22G00860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1011
Alignment locationchr22:275584..276594 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:275584..276594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00860.1 vs.
Match: EWM21486.1 (alpha beta hydrolase fold-3 domain protein [Nannochloropsis gaditana])

HSP 1 Score: 406.8 bits (1044), Expect = 6.700e-110
Identity = 201/331 (60.73%), Postives = 257/331 (77.64%), Query Frame = 0 
Query:    4 PSPSSSLSAASQAFLAQFFPPTAPLQRDIPIDLGRVNMETATRKFGGPLPSVRRIDNLSVPCLGDLSADVKIRVYWPLVEQEKKLPVVLYAHGGGWVKGNLNTHDNLCRRLAIGSGQVVVAVDYRLSPESRYPDALDDLEAAFKWVGGQPTLDSTQVTVAGDSAGGNLVSALVVRLLTKKDGEVKPDHQVKRQVLIYPIVDMRMEGESYEKYGAGFGLSEVSIQYYIEMYLGRSYTD--------ALVTNPEVSPILFGQPEMMPTTMIVTAECDPLASEAGALRERLEAAGVSVKHVVYPGIVHAYLTYFDLFPESEISVEEIVGWLKKE 327
            PSP S L+ ASQAFLAQ +PP AP  RD+P+D+GR  ME A R  GGP  SVRR+++LS+P L D +A VK+RVY P ++    LPV+LYAHGGG+VKGNL THD LCRR+A+GS  VVVAVDYRLSPE R+P ALDD+EAA+ WV GQ   D+T++++AGDSAGGNL+SAL VRL  K + +V+P+H+++RQVLIYP+VD+R  GESYE YG G+GLS  +I YY+E YLG +YTD        A++  PEVS IL+  PE +P T+I+TA CDPLASEAG L+ERLEAAGV V+ ++YP  VHAY+T+FD+FPESE S+EEIV +L ++
Sbjct:    2 PSPMS-LTPASQAFLAQIYPPNAPPARDMPLDVGRAKMEAAARALGGPYLSVRRVEDLSIPSL-DGNASVKVRVYSPKIDAT--LPVLLYAHGGGFVKGNLETHDQLCRRIAVGSDHVVVAVDYRLSPEHRFPAALDDVEAAYTWVVGQVAWDATRISLAGDSAGGNLMSALAVRLAGKPESQVRPEHRIRRQVLIYPVVDVRRRGESYETYGTGYGLSATAIDYYLESYLGPAYTDAKDEDARRAVLEKPEVSTILYQHPEKLPPTLILTAACDPLASEAGLLKERLEAAGVPVRQIIYPDTVHAYMTFFDIFPESEQSLEEIVRFLNED 328
The following BLAST results are available for this feature:
BLAST of NO22G00860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21486.16.700e-11060.73alpha beta hydrolase fold-3 domain protein [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00860NO22G00860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00860.1NO22G00860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00860.1.cds1NO22G00860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00860.1 ID=NO22G00860.1|Name=NO22G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1011bp
ATGTCATCGCCCTCTCCTTCCTCCTCCTTGTCGGCCGCATCCCAAGCCTT
TCTGGCCCAGTTTTTCCCTCCCACAGCCCCGCTCCAACGCGACATTCCCA
TCGACCTCGGCCGGGTCAACATGGAGACGGCCACCCGTAAATTTGGGGGT
CCCTTGCCCAGTGTCCGCCGCATCGACAATCTGAGCGTGCCTTGCTTGGG
TGATTTGAGCGCGGACGTTAAGATAAGGGTGTATTGGCCTTTGGTGGAGC
AGGAGAAGAAGCTGCCTGTGGTTCTGTACGCGCACGGCGGCGGGTGGGTG
AAAGGCAACCTGAACACACACGACAATCTATGTCGGCGCTTGGCCATAGG
CTCAGGACAGGTGGTCGTTGCGGTAGATTATCGACTTAGCCCTGAAAGTC
GGTATCCTGATGCATTGGACGACTTGGAGGCGGCATTCAAATGGGTGGGA
GGACAACCAACACTCGACTCCACGCAAGTGACGGTGGCAGGGGACAGTGC
CGGGGGGAATCTAGTCAGTGCTTTGGTGGTGAGACTGCTCACTAAAAAGG
ATGGAGAGGTCAAACCGGACCATCAGGTGAAGAGACAGGTGTTGATTTAC
CCGATTGTGGACATGCGGATGGAGGGCGAGAGTTATGAAAAGTATGGGGC
AGGTTTTGGGTTGTCCGAGGTTTCGATCCAATATTACATTGAGATGTACC
TGGGCCGTAGTTACACGGATGCATTGGTGACGAATCCAGAGGTGTCTCCC
ATCTTGTTTGGACAGCCTGAAATGATGCCGACGACGATGATAGTGACGGC
GGAATGTGACCCACTCGCGAGCGAGGCGGGTGCGTTACGGGAGCGATTGG
AGGCGGCAGGGGTGAGTGTGAAGCACGTGGTGTATCCGGGGATAGTGCAT
GCTTATTTGACGTATTTTGATTTGTTTCCCGAGTCAGAAATAAGTGTGGA
AGAGATCGTGGGGTGGTTGAAAAAAGAGACCTTGGCGGTAGGGGTGCAGG
GAGGGGTGTGA
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protein sequence of NO22G00860.1

>NO22G00860.1-protein ID=NO22G00860.1-protein|Name=NO22G00860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MSSPSPSSSLSAASQAFLAQFFPPTAPLQRDIPIDLGRVNMETATRKFGG
PLPSVRRIDNLSVPCLGDLSADVKIRVYWPLVEQEKKLPVVLYAHGGGWV
KGNLNTHDNLCRRLAIGSGQVVVAVDYRLSPESRYPDALDDLEAAFKWVG
GQPTLDSTQVTVAGDSAGGNLVSALVVRLLTKKDGEVKPDHQVKRQVLIY
PIVDMRMEGESYEKYGAGFGLSEVSIQYYIEMYLGRSYTDALVTNPEVSP
ILFGQPEMMPTTMIVTAECDPLASEAGALRERLEAAGVSVKHVVYPGIVH
AYLTYFDLFPESEISVEEIVGWLKKETLAVGVQGGV*
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mRNA from alignment at chr22:275584..276594-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00860.1 ID=NO22G00860.1|Name=NO22G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1011bp|location=Sequence derived from alignment at chr22:275584..276594- (Nannochloropsis oceanica)
ATGTCATCGCCCTCTCCTTCCTCCTCCTTGTCGGCCGCATCCCAAGCCTT
TCTGGCCCAGTTTTTCCCTCCCACAGCCCCGCTCCAACGCGACATTCCCA
TCGACCTCGGCCGGGTCAACATGGAGACGGCCACCCGTAAATTTGGGGGT
CCCTTGCCCAGTGTCCGCCGCATCGACAATCTGAGCGTGCCTTGCTTGGG
TGATTTGAGCGCGGACGTTAAGATAAGGGTGTATTGGCCTTTGGTGGAGC
AGGAGAAGAAGCTGCCTGTGGTTCTGTACGCGCACGGCGGCGGGTGGGTG
AAAGGCAACCTGAACACACACGACAATCTATGTCGGCGCTTGGCCATAGG
CTCAGGACAGGTGGTCGTTGCGGTAGATTATCGACTTAGCCCTGAAAGTC
GGTATCCTGATGCATTGGACGACTTGGAGGCGGCATTCAAATGGGTGGGA
GGACAACCAACACTCGACTCCACGCAAGTGACGGTGGCAGGGGACAGTGC
CGGGGGGAATCTAGTCAGTGCTTTGGTGGTGAGACTGCTCACTAAAAAGG
ATGGAGAGGTCAAACCGGACCATCAGGTGAAGAGACAGGTGTTGATTTAC
CCGATTGTGGACATGCGGATGGAGGGCGAGAGTTATGAAAAGTATGGGGC
AGGTTTTGGGTTGTCCGAGGTTTCGATCCAATATTACATTGAGATGTACC
TGGGCCGTAGTTACACGGATGCATTGGTGACGAATCCAGAGGTGTCTCCC
ATCTTGTTTGGACAGCCTGAAATGATGCCGACGACGATGATAGTGACGGC
GGAATGTGACCCACTCGCGAGCGAGGCGGGTGCGTTACGGGAGCGATTGG
AGGCGGCAGGGGTGAGTGTGAAGCACGTGGTGTATCCGGGGATAGTGCAT
GCTTATTTGACGTATTTTGATTTGTTTCCCGAGTCAGAAATAAGTGTGGA
AGAGATCGTGGGGTGGTTGAAAAAAGAGACCTTGGCGGTAGGGGTGCAGG
GAGGGGTGTGA
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Coding sequence (CDS) from alignment at chr22:275584..276594-

>NO22G00860.1 ID=NO22G00860.1|Name=NO22G00860.1|organism=Nannochloropsis oceanica|type=CDS|length=1011bp|location=Sequence derived from alignment at chr22:275584..276594- (Nannochloropsis oceanica)
ATGTCATCGCCCTCTCCTTCCTCCTCCTTGTCGGCCGCATCCCAAGCCTT
TCTGGCCCAGTTTTTCCCTCCCACAGCCCCGCTCCAACGCGACATTCCCA
TCGACCTCGGCCGGGTCAACATGGAGACGGCCACCCGTAAATTTGGGGGT
CCCTTGCCCAGTGTCCGCCGCATCGACAATCTGAGCGTGCCTTGCTTGGG
TGATTTGAGCGCGGACGTTAAGATAAGGGTGTATTGGCCTTTGGTGGAGC
AGGAGAAGAAGCTGCCTGTGGTTCTGTACGCGCACGGCGGCGGGTGGGTG
AAAGGCAACCTGAACACACACGACAATCTATGTCGGCGCTTGGCCATAGG
CTCAGGACAGGTGGTCGTTGCGGTAGATTATCGACTTAGCCCTGAAAGTC
GGTATCCTGATGCATTGGACGACTTGGAGGCGGCATTCAAATGGGTGGGA
GGACAACCAACACTCGACTCCACGCAAGTGACGGTGGCAGGGGACAGTGC
CGGGGGGAATCTAGTCAGTGCTTTGGTGGTGAGACTGCTCACTAAAAAGG
ATGGAGAGGTCAAACCGGACCATCAGGTGAAGAGACAGGTGTTGATTTAC
CCGATTGTGGACATGCGGATGGAGGGCGAGAGTTATGAAAAGTATGGGGC
AGGTTTTGGGTTGTCCGAGGTTTCGATCCAATATTACATTGAGATGTACC
TGGGCCGTAGTTACACGGATGCATTGGTGACGAATCCAGAGGTGTCTCCC
ATCTTGTTTGGACAGCCTGAAATGATGCCGACGACGATGATAGTGACGGC
GGAATGTGACCCACTCGCGAGCGAGGCGGGTGCGTTACGGGAGCGATTGG
AGGCGGCAGGGGTGAGTGTGAAGCACGTGGTGTATCCGGGGATAGTGCAT
GCTTATTTGACGTATTTTGATTTGTTTCCCGAGTCAGAAATAAGTGTGGA
AGAGATCGTGGGGTGGTTGAAAAAAGAGACCTTGGCGGTAGGGGTGCAGG
GAGGGGTGTGA
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Synonyms
Publications