NO22G00800.2, NO22G00800.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00800.2
Unique NameNO22G00800.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3091
Alignment locationchr22:262468..265727 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:262468..265727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00800.2 vs.
Match: EWM21418.1 (dhhc zinc finger domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 389.8 bits (1000), Expect = 8.300e-105
Identity = 204/315 (64.76%), Postives = 235/315 (74.60%), Query Frame = 0 
Query:    1 MEIESGRKTPTRGPGTRSTSSYRSLGTQDSSSFGASPGEAATAGAGGGGGAAAAAGATHNPPRFPSSSSSSTYSSGAARWRSPLNILVSTRNVMSQIMTFSRGGMECPLPFLCDEDHPDPCECLCNLIQMPRVPAARHHYLIYRSPAPIAYSSSSLPSSSSSR---NERIYTIGPHWAGLVFTIFLVCLASYLFITHVALELGSIFVGIACVYTFLTLATLLRTACLDPGFITRSVPPSLPRRKFCQVCRLYTGPTAQHCEDCKVCIEGLDHHCPWMGHCVGKGNLGAFLCFNCVWLTYVLFVLGCLAAQGGVFG 313
            ME+ESG +         S++ Y SLGT    S       +A AG           GATH+P   PS S+SS+ ++    WR PL++L+STRN++ QI++FSRGGMECPLP L DEDHPDP ECLCNLI MPRVPAARHHYLIY SP P + S    P SSS       R+YT+GPHWAG+VFT+FLVCLAS+LFI+HV + LG  FV +A VYT LTL TLLRTACLDPG ITRSVPPSLPRRK+C +CRLYTGPTA+HCEDC VCIEG+DHHCPWMGHCVG GN+GAFLCFNCVWLTYVLFVL CLAAQ GVFG
Sbjct:   68 MEMESGCEALRTPSPWLSSAPYISLGTTSMPS-------SAPAGH---------LGATHSP--LPSRSASSSRTNP---WRRPLDLLISTRNIVGQILSFSRGGMECPLPVLYDEDHPDPFECLCNLINMPRVPAARHHYLIYLSPPPPSSSLGPSPPSSSCPPPPGGRLYTVGPHWAGVVFTVFLVCLASFLFISHVCVPLGPFFVLVAGVYTGLTLLTLLRTACLDPGLITRSVPPSLPRRKYCSICRLYTGPTARHCEDCGVCIEGMDHHCPWMGHCVGSGNMGAFLCFNCVWLTYVLFVLACLAAQSGVFG 361
The following BLAST results are available for this feature:
BLAST of NO22G00800.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21418.18.300e-10564.76dhhc zinc finger domain-containing protein [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00800NO22G00800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00800.2NO22G00800.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00800.2.cds1NO22G00800.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00800.2.cds2NO22G00800.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00800.2 ID=NO22G00800.2|Name=NO22G00800.2|organism=Nannochloropsis oceanica|type=mRNA|length=3091bp
CGGGTGCTGCCGCTGCGAGCCTGTGTGGATGGTATGTGTGGGCAAAGAGG
GAAGGAGGGGATAAGACAAGGGCATGAAGATGACGAATCGGAAAAGATTG
GAGGCCGAGCGATACGTTGCCATCCTCGTGCAGCAAGGACCACGCAAAAC
GTGGCGGGGTCTCTCCATGCTGGTGGCAGCACAAGCAAAAGGAGGAGAGT
GGTTCCGGGCGCGGGAAAGGAGGACACCAGGGACGACTTAATTAAGTCTT
TGCCGTAGGTGCCGTGCATCATCAATCTTTCTCTTTCCTTGCCCCGGCTG
CTAGCGTGGCCATCTTGGTCCTGCCCCGTGTCCAACACAGCGGCTGTCCA
AGGAAAGTGTGGCCTTTGAACGCGAATTCGGTGAGGTACCGTGAGGATTG
TCCATGGTTTCCCGCAGGCTGCGAAGGAAAGGAGGAAAAGGACCTGTCGA
GGGGCAGGTTAGGACTCGAGGAGGGCGGAGAGGAGGCAGAAGAAGCGAGT
CCCTTTGACCAGCACTCTCGCAACAAAGAGAAAAATGCCAACGCATACAA
TGACAGTACACACACATGCTTTGCAAGTGGGTGGTGAGAGTGGTCACCGA
AACAAGAAAAGCAGTGCGAGGCCTTGATGCCTCGATGCTTCTTGCTTGGT
TCGCTTGCTCACTTGTCTTCTCTCGATCTCCGTCTCGCTCGATTTCCTTT
GGAAATTTGGTGTGGTTTAGAATGTGCAACTGCTTTCACGTCATACACTG
CACACCACTGTCATATGACACGTGTTTTTTAATATCTACATCCAGCTGCT
TCTCGAGAATGCGCCACAACGCACTCCACGTCATAGGCGCATCATAATTA
TCTCGCCTGACCCGTCTTGAAGCAGCGCGCAGGCTGCTGCTGCTGCCCAT
AGTCAAGCTCCTGCGCTGGGCCCTGCACGACCCACGCACCGTTCTCTTTC
CCTTGAGAACCACCGAGACGGAGAGGCATGAGTGACCAAGACGCTTCCAA
GACATTTGATCGATGCCCGTGAATCCCGCTCGCCCCTTGGCCCCTAATCT
GGGTCACACAGCACAACATGAATCAAAAGAATAAATGTGCCCTCCTCCCC
TGGCTACCCCAATCACACAGGATAAGCAGCAGTAGTGGCAGCAGCTGTGG
CCGATGCTCTCCCCCATTGCCGAGTCCCCACAGAAGGAGCGGGCAGCGGA
GCAAGACGAGGAAGAGGGAATAACAGCGACTGTGCGAGCGCGTGCACAAC
ATAAATATGAACTCCAAGCAAACGATGAGGAGGACGAGGGGAAGGACGAG
GGAGAAGAAGAGGAGGATCGGTTGTTAAACGTTTACTCCAGAAGAAGATG
GAGCCGGTTGGAGACGGTAACTAGAGGAAGGGAGGGAGGAAGGGATTGAG
GGGCAGAACTGTGTGTCCATGCCCCTTTGAAATATGTTCTTTTTACTTCT
AAAACCAATGAGGAGGGTACAGTTTATTTCACGTGGCTGCTCTAAAAAAC
GCAGCAATGTTTATTACCCTGTTATTCCTCTTTCCTCTTCTCCCCCATTC
CTCCACACTTTATAGATGGAAATTGAGAGCGGTCGCAAGACACCCACAAG
AGGTCCTGGCACCCGCTCCACCTCCTCCTATAGAAGCCTCGGCACGCAGG
ACTCTTCCTCTTTCGGCGCATCGCCAGGAGAAGCAGCAACAGCAGGAGCG
GGAGGAGGAGGGGGAGCAGCAGCAGCAGCAGGAGCGACGCACAACCCTCC
GCGTTTTCCCTCCTCCTCTTCTTCCTCCACTTATTCCTCGGGCGCGGCGA
GATGGAGAAGCCCATTGAATATTTTGGTGTCGACCAGGAATGTTATGAGC
CAGATAATGACCTTCTCGAGGGGAGGGATGGAGTGTCCGTTGCCTTTCTT
GTGCGACGAGGACCATCCCGATCCATGTGAATGCCTCTGCAATCTCATAC
AGATGCCCCGCGTCCCCGCCGCCCGCCATCACTACCTCATCTATCGCTCA
CCAGCTCCTATCGCCTATTCCTCCTCCTCCCTTCCTTCTTCGTCCTCGTC
AAGAAATGAGCGAATTTATACGATTGGCCCGCATTGGGCAGGTCTTGTTT
TTACCATATTTTTGGTCTGTCTGGCTTCGTATTTGTTCATCACCCACGTC
GCTCTCGAGCTTGGCTCGATCTTCGTAGGTATTGCATGTGTGTACACATT
CCTGACTTTGGCGACGCTCTTAAGAACTGCCTGTCTGGACCCCGGGTTTA
TCACTCGCTCGGTTCCTCCCTCCCTCCCTCGTCGTAAATTCTGCCAGGTG
TGTCGGTTGTACACAGGACCTACCGCCCAGCACTGCGAGGACTGCAAAGT
GTGCATAGAAGGGCTGGATCATCACTGCCCGTGGATGGGACACTGTGTGG
GGAAGGGGAATCTAGGCGCGTTTTTGTGTTTCAATTGCGTGTGGTTGACC
TACGTGTTGTTCGTGCTTGGATGTTTGGCAGCGCAGGGTGGGGTGTTTGG
GAGGGAGGGGGCGGGAGCTGGAGGCATGAAAGGAGGGAAGTAGAGTGCCC
CTTATTTCTGTCTTCTTGTTTTTGATCAATGCAAGTAGAGAAAGAAGGTG
CCAATTAAGGTCAGGTGTGTTCGGAAGACTCTGAGTGTCGTGCGGGATGA
AAGCCGCTACTGACAAGTTGTGCAGTCTGGAGGACGCACTAACGAACGAA
GGGGGAAGTGTTCAACTCGTCAGACACGTAGGGAATGAGCGCCAAGCATT
TTCTTATTTACCTTGGACTTTTGTGATTGGTTAATTGTTCAACCCTACGT
TGTATGTAGAGCGCGTATGTGGGCATGGGCAAGGGAATGAAGAAATTCGA
AGGTTATGGGGAAGTGGACGAGCGAGAGGAGACGAGCGAAAATGGATGAA
AGATTCGAAATAGAAAAGCAGCCCATGACGAGGCAAATTGATCATCAAAC
GAGCGTGGCGTCGATACTTTATTTTTCGGCAAAGTGTTCGAGAAATGAAA
GCGTATAATGGAAATTAGAAGAGGCGAAATGATATCAAGGGCTTTAAATC
AGAGAAAAGGTGAGAAAATCTGAGAGGCGACAAGCATCCGG
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protein sequence of NO22G00800.2

>NO22G00800.2-protein ID=NO22G00800.2-protein|Name=NO22G00800.2|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MEIESGRKTPTRGPGTRSTSSYRSLGTQDSSSFGASPGEAATAGAGGGGG
AAAAAGATHNPPRFPSSSSSSTYSSGAARWRSPLNILVSTRNVMSQIMTF
SRGGMECPLPFLCDEDHPDPCECLCNLIQMPRVPAARHHYLIYRSPAPIA
YSSSSLPSSSSSRNERIYTIGPHWAGLVFTIFLVCLASYLFITHVALELG
SIFVGIACVYTFLTLATLLRTACLDPGFITRSVPPSLPRRKFCQVCRLYT
GPTAQHCEDCKVCIEGLDHHCPWMGHCVGKGNLGAFLCFNCVWLTYVLFV
LGCLAAQGGVFGREGAGAGGMKGGK*
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mRNA from alignment at chr22:262468..265727+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00800.2 ID=NO22G00800.2|Name=NO22G00800.2|organism=Nannochloropsis oceanica|type=mRNA|length=3260bp|location=Sequence derived from alignment at chr22:262468..265727+ (Nannochloropsis oceanica)
CGGGTGCTGCCGCTGCGAGCCTGTGTGGATGGTATGTGTGGGCAAAGAGG
GAAGGAGGGGATAAGACAAGGGCATGAAGATGACGAATCGGAAAAGATTG
GAGGCCGAGCGATACGTTGCCATCCTCGTGCAGCAAGGACCACGCAAAAC
GTGGCGGGGTCTCTCCATGCTGGTGGCAGCACAAGCAAAAGGAGGAGAGT
GGTTCCGGGCGCGGGAAAGGAGGACACCAGGGACGACTTAATTAAGTCTT
TGCCGTAGGTGCCGTGCATCATCAATCTTTCTCTTTCCTTGCCCCGGCTG
CTAGCGTGGCCATCTTGGTCCTGCCCCGTGTCCAACACAGCGGCTGTCCA
AGGAAAGTGTGGCCTTTGAACGCGAATTCGGTGAGGTACCGTGAGGATTG
TCCATGGTTTCCCGCAGGCTGCGAAGGAAAGGAGGAAAAGGACCTGTCGA
GGGGCAGGTTAGGACTCGAGGAGGGCGGAGAGGAGGCAGAAGAAGCGAGT
CCCTTTGACCAGCACTCTCGCAACAAAGAGAAAAATGCCAACGCATACAA
TGACAGTACACACACATGCTTTGCAAGTGGGTGGTGAGAGTGGTCACCGA
AACAAGAAAAGCAGTGCGAGGCCTTGATGCCTCGATGCTTCTTGCTTGGT
TCGCTTGCTCACTTGTCTTCTCTCGATCTCCGTCTCGCTCGATTTCCTTT
GGAAATTTGGTGTGGTTTAGAATGTGCAACTGCTTTCACGTCATACACTG
CACACCACTGTCATATGACACGTGTTTTTTAATATCTACATCCAGCTGCT
TCTCGAGAATGCGCCACAACGCACTCCACGTCATAGGCGCATCATAATTA
TCTCGCCTGACCCGTCTTGAAGCAGCGCGCAGGCTGCTGCTGCTGCCCAT
AGTCAAGCTCCTGCGCTGGGCCCTGCACGACCCACGCACCGTTCTCTTTC
CCTTGAGAACCACCGAGACGGAGAGGCATGAGTGACCAAGACGCTTCCAA
GACATTTGATCGATGCCCGTGAATCCCGCTCGCCCCTTGGCCCCTAATCT
GGGTCACACAGCACAACATGAATCAAAAGAATAAATGTGCCCTCCTCCCC
TGGCTACCCCAATCACACAGGATAAGCAGCAGTAGTGGCAGCAGCTGTGG
CCGATGCTCTCCCCCATTGCCGAGTCCCCACAGAAGGAGCGGGCAGCGGA
GCAAGACGAGGAAGAGGGAATAACAGCGACTGTGCGAGCGCGTGCACAAC
ATAAATATGAACTCCAAGCAAACGATGAGGAGGACGAGGGGAAGGACGAG
GGAGAAGAAGAGGAGGATCGGTTGTTAAACGTTTACTCCAGAAGAAGATG
GAGCCGGTTGGAGACGGTAACTAGAGGAAGGGAGGGAGGAAGGGATTGAG
GGGCAGAACTGTGTGTCCATGCCCCTTTGAAATATGTTCTTTTTACTTCT
AAAACCAATGAGGAGGGTACAGTTTATTTCACGTGGCTGCTCTAAAAAAC
GCAGCAATGTTTATTACCCTGTTATTCCTCTTTCCTCTTCTCCCCCATTC
CTCCACACTTTATAGATGGAAATTGAGAGCGGTCGCAAGACACCCACAAG
AGGTCCTGGCACCCGCTCCACCTCCTCCTATAGAAGCCTCGGCACGCAGG
ACTCTTCCTCTTTCGGCGCATCGCCAGGAGAAGCAGCAACAGCAGGAGCG
GGAGGAGGAGGGGGAGCAGCAGCAGCAGCAGGAGCGACGCACAACCCTCC
GCGTTTTCCCTCCTCCTCTTCTTCCTCCACTTATTCCTCGGGCGCGGCGA
GATGGAGAAGCCCATTGAATATTTTGGTGTCGACCAGGAATGTTATGAGC
CAGATAATGACCTTCTCGAGGGGAGGGATGGAGTGTCCGTTGCCTTTCTT
GTGCGACGAGGACCATCCCGATCCATGTGTAAGTAATGAAGTAATTGTAT
GATTAATGTGAAGGGTGTCAAAGAATGAATGCAGATATGTCCGTTTGTCG
ACGATTTCGTCTGCCAACTCAACCCCAACCTCATCACGTGTCTTGGCTCT
CTCCTCCCCTCGCTCCCTCACTCGCTTCCTTCCTCTCGCCCCCACAGGAA
TGCCTCTGCAATCTCATACAGATGCCCCGCGTCCCCGCCGCCCGCCATCA
CTACCTCATCTATCGCTCACCAGCTCCTATCGCCTATTCCTCCTCCTCCC
TTCCTTCTTCGTCCTCGTCAAGAAATGAGCGAATTTATACGATTGGCCCG
CATTGGGCAGGTCTTGTTTTTACCATATTTTTGGTCTGTCTGGCTTCGTA
TTTGTTCATCACCCACGTCGCTCTCGAGCTTGGCTCGATCTTCGTAGGTA
TTGCATGTGTGTACACATTCCTGACTTTGGCGACGCTCTTAAGAACTGCC
TGTCTGGACCCCGGGTTTATCACTCGCTCGGTTCCTCCCTCCCTCCCTCG
TCGTAAATTCTGCCAGGTGTGTCGGTTGTACACAGGACCTACCGCCCAGC
ACTGCGAGGACTGCAAAGTGTGCATAGAAGGGCTGGATCATCACTGCCCG
TGGATGGGACACTGTGTGGGGAAGGGGAATCTAGGCGCGTTTTTGTGTTT
CAATTGCGTGTGGTTGACCTACGTGTTGTTCGTGCTTGGATGTTTGGCAG
CGCAGGGTGGGGTGTTTGGGAGGGAGGGGGCGGGAGCTGGAGGCATGAAA
GGAGGGAAGTAGAGTGCCCCTTATTTCTGTCTTCTTGTTTTTGATCAATG
CAAGTAGAGAAAGAAGGTGCCAATTAAGGTCAGGTGTGTTCGGAAGACTC
TGAGTGTCGTGCGGGATGAAAGCCGCTACTGACAAGTTGTGCAGTCTGGA
GGACGCACTAACGAACGAAGGGGGAAGTGTTCAACTCGTCAGACACGTAG
GGAATGAGCGCCAAGCATTTTCTTATTTACCTTGGACTTTTGTGATTGGT
TAATTGTTCAACCCTACGTTGTATGTAGAGCGCGTATGTGGGCATGGGCA
AGGGAATGAAGAAATTCGAAGGTTATGGGGAAGTGGACGAGCGAGAGGAG
ACGAGCGAAAATGGATGAAAGATTCGAAATAGAAAAGCAGCCCATGACGA
GGCAAATTGATCATCAAACGAGCGTGGCGTCGATACTTTATTTTTCGGCA
AAGTGTTCGAGAAATGAAAGCGTATAATGGAAATTAGAAGAGGCGAAATG
ATATCAAGGGCTTTAAATCAGAGAAAAGGTGAGAAAATCTGAGAGGCGAC
AAGCATCCGG
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Coding sequence (CDS) from alignment at chr22:262468..265727+

>NO22G00800.2 ID=NO22G00800.2|Name=NO22G00800.2|organism=Nannochloropsis oceanica|type=CDS|length=978bp|location=Sequence derived from alignment at chr22:262468..265727+ (Nannochloropsis oceanica)
ATGGAAATTGAGAGCGGTCGCAAGACACCCACAAGAGGTCCTGGCACCCG
CTCCACCTCCTCCTATAGAAGCCTCGGCACGCAGGACTCTTCCTCTTTCG
GCGCATCGCCAGGAGAAGCAGCAACAGCAGGAGCGGGAGGAGGAGGGGGA
GCAGCAGCAGCAGCAGGAGCGACGCACAACCCTCCGCGTTTTCCCTCCTC
CTCTTCTTCCTCCACTTATTCCTCGGGCGCGGCGAGATGGAGAAGCCCAT
TGAATATTTTGGTGTCGACCAGGAATGTTATGAGCCAGATAATGACCTTC
TCGAGGGGAGGGATGGAGTGTCCGTTGCCTTTCTTGTGCGACGAGGACCA
TCCCGATCCATGTGAATGCCTCTGCAATCTCATACAGATGCCCCGCGTCC
CCGCCGCCCGCCATCACTACCTCATCTATCGCTCACCAGCTCCTATCGCC
TATTCCTCCTCCTCCCTTCCTTCTTCGTCCTCGTCAAGAAATGAGCGAAT
TTATACGATTGGCCCGCATTGGGCAGGTCTTGTTTTTACCATATTTTTGG
TCTGTCTGGCTTCGTATTTGTTCATCACCCACGTCGCTCTCGAGCTTGGC
TCGATCTTCGTAGGTATTGCATGTGTGTACACATTCCTGACTTTGGCGAC
GCTCTTAAGAACTGCCTGTCTGGACCCCGGGTTTATCACTCGCTCGGTTC
CTCCCTCCCTCCCTCGTCGTAAATTCTGCCAGGTGTGTCGGTTGTACACA
GGACCTACCGCCCAGCACTGCGAGGACTGCAAAGTGTGCATAGAAGGGCT
GGATCATCACTGCCCGTGGATGGGACACTGTGTGGGGAAGGGGAATCTAG
GCGCGTTTTTGTGTTTCAATTGCGTGTGGTTGACCTACGTGTTGTTCGTG
CTTGGATGTTTGGCAGCGCAGGGTGGGGTGTTTGGGAGGGAGGGGGCGGG
AGCTGGAGGCATGAAAGGAGGGAAGTAG
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Synonyms
Publications