NO22G00800.1, NO22G00800.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO22G00800.1
Unique Name	NO22G00800.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2892
Alignment location	chr22:262468..265727 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr22	genome	chr22:262468..265727 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO22G00800.1 vs.
Match: EWM21418.1 (dhhc zinc finger domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 407.1 bits (1045), Expect = 6.100e-110
Identity = 233/387 (60.21%), Postives = 272/387 (70.28%), Query Frame = 0

Query:    1 MLSPIAESPQKERAAEQDEEEGITATVRARAQHKYELQANDEEDEGKDEGEEEEDRLLNVYSR-RRWSRLETMEIESGRKTPTRGPGTRSTSSYRSLGTQDSSSFGASPGEAATAGAGGGGGAAAAAGATHNPPRFPSSSSSSTYSSGAARWRSPLNILVSTRNVMSQIMTFSRGGMECPLPFLCDEDHPDPCECLCNLIQMPRVPAARHHYLIYRSPAPIAYSSSSLPSSSSSR---NERIYTIGPHWAGLVFTIFLVCLASYLFITHVALELGSIFVGIACVYTFLTLATLLRTACLDPGFITRSVPPSLPRRKFCQVCRLYTGPTAQHCEDCKVCIEGLDHHCPWMGHCVGKGNLGAFLCFNCVWLTYVLFVLGCLAAQGGVFG 384
            MLSPIAESP KE+AAEQDEE G T  V     H  +++   EEDE      +   R +   +R  +  R   ME+ESG +         S++ Y SLGT    S       +A AG           GATH+P   PS S+SS+ ++    WR PL++L+STRN++ QI++FSRGGMECPLP L DEDHPDP ECLCNLI MPRVPAARHHYLIY SP P + S    P SSS       R+YT+GPHWAG+VFT+FLVCLAS+LFI+HV + LG  FV +A VYT LTL TLLRTACLDPG ITRSVPPSLPRRK+C +CRLYTGPTA+HCEDC VCIEG+DHHCPWMGHCVG GN+GAFLCFNCVWLTYVLFVL CLAAQ GVFG
Sbjct:    1 MLSPIAESPLKEQAAEQDEE-GETKNVN----HSRDVEHVVEEDEENLLSADALRRRIQESTRCGKPFRGTPMEMESGCEALRTPSPWLSSAPYISLGTTSMPS-------SAPAGH---------LGATHSP--LPSRSASSSRTNP---WRRPLDLLISTRNIVGQILSFSRGGMECPLPVLYDEDHPDPFECLCNLINMPRVPAARHHYLIYLSPPPPSSSLGPSPPSSSCPPPPGGRLYTVGPHWAGVVFTVFLVCLASFLFISHVCVPLGPFFVLVAGVYTGLTLLTLLRTACLDPGLITRSVPPSLPRRKYCSICRLYTGPTARHCEDCGVCIEGMDHHCPWMGHCVGSGNMGAFLCFNCVWLTYVLFVLACLAAQSGVFG 361

The following BLAST results are available for this feature:

BLAST of NO22G00800.1 vs.

BLAST of NO22G00800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM21418.1	6.100e-110	60.21	dhhc zinc finger domain-containing protein [Nannoc...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO22G00800	NO22G00800	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO22G00800.1	NO22G00800.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO22G00800.1.cds1	NO22G00800.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00800.1.cds2	NO22G00800.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00800.1.cds3	NO22G00800.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr22:262468..265727+
coding sequence from alignment at chr22:262468..265727+

mRNA sequence

>NO22G00800.1 ID=NO22G00800.1|Name=NO22G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2892bp
CGGGTGCTGCCGCTGCGAGCCTGTGTGGATGGTATGTGTGGGCAAAGAGG
GAAGGAGGGGATAAGACAAGGGCATGAAGATGACGAATCGGAAAAGATTG
GAGGCCGAGCGATACGTTGCCATCCTCGTGCAGCAAGGACCACGCAAAAC
GTGGCGGGGTCTCTCCATGCTGGTGGCAGCACAAGCAAAAGGAGGAGAGT
GGTTCCGGGCGCGGGAAAGGAGGACACCAGGGACGACTTAATTAAGTCTT
TGCCGTAGGTGCCGTGCATCATCAATCTTTCTCTTTCCTTGCCCCGGCTG
CTAGCGTGGCCATCTTGGTCCTGCCCCGTGTCCAACACAGCGGCTGTCCA
AGGAAAGTGTGGCCTTTGAACGCGAATTCGGTGAGGTACCGTGAGGATTG
TCCATGGTTTCCCGCAGGCTGCGAAGGAAAGGAGGAAAAGGACCTGTCGA
GGGGCAGGTTAGGACTCGAGGAGGGCGGAGAGGAGGCAGAAGAAGCGAGT
CCCTTTGACCAGCACTCTCGCAACAAAGAGAAAAATGCCAACGCATACAA
TGACAGTACACACACATGCTTTGCAAGTGGGTGGTGAGAGTGGTCACCGA
AACAAGAAAAGCAGTGCGAGGCCTTGATGCCTCGATGCTTCTTGCTTGGT
TCGCTTGCTCACTTGTCTTCTCTCGATCTCCGTCTCGCTCGATTTCCTTT
GGAAATTTGGTGTGGTTTAGAATGTGCAACTGCTTTCACGTCATACACTG
CACACCACTGTCATATGACACGTGTTTTTTAATATCTACATCCAGCTGCT
TCTCGAGAATGCGCCACAACGCACTCCACGTCATAGGCGCATCATAATTA
TCTCGCCTGACCCGTCTTGAAGCAGCGCGCAGGCTGCTGCTGCTGCCCAT
AGTCAAGCTCCTGCGCTGGGCCCTGCACGACCCACGCACCGTTCTCTTTC
CCTTGAGAACCACCGAGACGGAGAGGCATGAGTGACCAAGACGCTTCCAA
GACATTTGATCGATGCCCGTGAATCCCGCTCGCCCCTTGGCCCCTAATCT
GGGTCACACAGCACAACATGAATCAAAAGAATAAATGTGCCCTCCTCCCC
TGGCTACCCCAATCACACAGGATAAGCAGCAGTAGTGGCAGCAGCTGTGG
CCGATGCTCTCCCCCATTGCCGAGTCCCCACAGAAGGAGCGGGCAGCGGA
GCAAGACGAGGAAGAGGGAATAACAGCGACTGTGCGAGCGCGTGCACAAC
ATAAATATGAACTCCAAGCAAACGATGAGGAGGACGAGGGGAAGGACGAG
GGAGAAGAAGAGGAGGATCGGTTGTTAAACGTTTACTCCAGAAGAAGATG
GAGCCGGTTGGAGACGATGGAAATTGAGAGCGGTCGCAAGACACCCACAA
GAGGTCCTGGCACCCGCTCCACCTCCTCCTATAGAAGCCTCGGCACGCAG
GACTCTTCCTCTTTCGGCGCATCGCCAGGAGAAGCAGCAACAGCAGGAGC
GGGAGGAGGAGGGGGAGCAGCAGCAGCAGCAGGAGCGACGCACAACCCTC
CGCGTTTTCCCTCCTCCTCTTCTTCCTCCACTTATTCCTCGGGCGCGGCG
AGATGGAGAAGCCCATTGAATATTTTGGTGTCGACCAGGAATGTTATGAG
CCAGATAATGACCTTCTCGAGGGGAGGGATGGAGTGTCCGTTGCCTTTCT
TGTGCGACGAGGACCATCCCGATCCATGTGAATGCCTCTGCAATCTCATA
CAGATGCCCCGCGTCCCCGCCGCCCGCCATCACTACCTCATCTATCGCTC
ACCAGCTCCTATCGCCTATTCCTCCTCCTCCCTTCCTTCTTCGTCCTCGT
CAAGAAATGAGCGAATTTATACGATTGGCCCGCATTGGGCAGGTCTTGTT
TTTACCATATTTTTGGTCTGTCTGGCTTCGTATTTGTTCATCACCCACGT
CGCTCTCGAGCTTGGCTCGATCTTCGTAGGTATTGCATGTGTGTACACAT
TCCTGACTTTGGCGACGCTCTTAAGAACTGCCTGTCTGGACCCCGGGTTT
ATCACTCGCTCGGTTCCTCCCTCCCTCCCTCGTCGTAAATTCTGCCAGGT
GTGTCGGTTGTACACAGGACCTACCGCCCAGCACTGCGAGGACTGCAAAG
TGTGCATAGAAGGGCTGGATCATCACTGCCCGTGGATGGGACACTGTGTG
GGGAAGGGGAATCTAGGCGCGTTTTTGTGTTTCAATTGCGTGTGGTTGAC
CTACGTGTTGTTCGTGCTTGGATGTTTGGCAGCGCAGGGTGGGGTGTTTG
GGAGGGAGGGGGCGGGAGCTGGAGGCATGAAAGGAGGGAAGTAGAGTGCC
CCTTATTTCTGTCTTCTTGTTTTTGATCAATGCAAGTAGAGAAAGAAGGT
GCCAATTAAGGTCAGGTGTGTTCGGAAGACTCTGAGTGTCGTGCGGGATG
AAAGCCGCTACTGACAAGTTGTGCAGTCTGGAGGACGCACTAACGAACGA
AGGGGGAAGTGTTCAACTCGTCAGACACGTAGGGAATGAGCGCCAAGCAT
TTTCTTATTTACCTTGGACTTTTGTGATTGGTTAATTGTTCAACCCTACG
TTGTATGTAGAGCGCGTATGTGGGCATGGGCAAGGGAATGAAGAAATTCG
AAGGTTATGGGGAAGTGGACGAGCGAGAGGAGACGAGCGAAAATGGATGA
AAGATTCGAAATAGAAAAGCAGCCCATGACGAGGCAAATTGATCATCAAA
CGAGCGTGGCGTCGATACTTTATTTTTCGGCAAAGTGTTCGAGAAATGAA
AGCGTATAATGGAAATTAGAAGAGGCGAAATGATATCAAGGGCTTTAAAT
CAGAGAAAAGGTGAGAAAATCTGAGAGGCGACAAGCATCCGG

protein sequence of NO22G00800.1

>NO22G00800.1-protein ID=NO22G00800.1-protein|Name=NO22G00800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=397bp
MLSPIAESPQKERAAEQDEEEGITATVRARAQHKYELQANDEEDEGKDEG
EEEEDRLLNVYSRRRWSRLETMEIESGRKTPTRGPGTRSTSSYRSLGTQD
SSSFGASPGEAATAGAGGGGGAAAAAGATHNPPRFPSSSSSSTYSSGAAR
WRSPLNILVSTRNVMSQIMTFSRGGMECPLPFLCDEDHPDPCECLCNLIQ
MPRVPAARHHYLIYRSPAPIAYSSSSLPSSSSSRNERIYTIGPHWAGLVF
TIFLVCLASYLFITHVALELGSIFVGIACVYTFLTLATLLRTACLDPGFI
TRSVPPSLPRRKFCQVCRLYTGPTAQHCEDCKVCIEGLDHHCPWMGHCVG
KGNLGAFLCFNCVWLTYVLFVLGCLAAQGGVFGREGAGAGGMKGGK*

mRNA from alignment at chr22:262468..265727+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO22G00800.1 ID=NO22G00800.1|Name=NO22G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=3260bp|location=Sequence derived from alignment at chr22:262468..265727+ (Nannochloropsis oceanica)
CGGGTGCTGCCGCTGCGAGCCTGTGTGGATGGTATGTGTGGGCAAAGAGG
GAAGGAGGGGATAAGACAAGGGCATGAAGATGACGAATCGGAAAAGATTG
GAGGCCGAGCGATACGTTGCCATCCTCGTGCAGCAAGGACCACGCAAAAC
GTGGCGGGGTCTCTCCATGCTGGTGGCAGCACAAGCAAAAGGAGGAGAGT
GGTTCCGGGCGCGGGAAAGGAGGACACCAGGGACGACTTAATTAAGTCTT
TGCCGTAGGTGCCGTGCATCATCAATCTTTCTCTTTCCTTGCCCCGGCTG
CTAGCGTGGCCATCTTGGTCCTGCCCCGTGTCCAACACAGCGGCTGTCCA
AGGAAAGTGTGGCCTTTGAACGCGAATTCGGTGAGGTACCGTGAGGATTG
TCCATGGTTTCCCGCAGGCTGCGAAGGAAAGGAGGAAAAGGACCTGTCGA
GGGGCAGGTTAGGACTCGAGGAGGGCGGAGAGGAGGCAGAAGAAGCGAGT
CCCTTTGACCAGCACTCTCGCAACAAAGAGAAAAATGCCAACGCATACAA
TGACAGTACACACACATGCTTTGCAAGTGGGTGGTGAGAGTGGTCACCGA
AACAAGAAAAGCAGTGCGAGGCCTTGATGCCTCGATGCTTCTTGCTTGGT
TCGCTTGCTCACTTGTCTTCTCTCGATCTCCGTCTCGCTCGATTTCCTTT
GGAAATTTGGTGTGGTTTAGAATGTGCAACTGCTTTCACGTCATACACTG
CACACCACTGTCATATGACACGTGTTTTTTAATATCTACATCCAGCTGCT
TCTCGAGAATGCGCCACAACGCACTCCACGTCATAGGCGCATCATAATTA
TCTCGCCTGACCCGTCTTGAAGCAGCGCGCAGGCTGCTGCTGCTGCCCAT
AGTCAAGCTCCTGCGCTGGGCCCTGCACGACCCACGCACCGTTCTCTTTC
CCTTGAGAACCACCGAGACGGAGAGGCATGAGTGACCAAGACGCTTCCAA
GACATTTGATCGATGCCCGTGAATCCCGCTCGCCCCTTGGCCCCTAATCT
GGGTCACACAGCACAACATGAATCAAAAGAATAAATGTGCCCTCCTCCCC
TGGCTACCCCAATCACACAGGATAAGCAGCAGTAGTGGCAGCAGCTGTGG
CCGATGCTCTCCCCCATTGCCGAGTCCCCACAGAAGGAGCGGGCAGCGGA
GCAAGACGAGGAAGAGGGAATAACAGCGACTGTGCGAGCGCGTGCACAAC
ATAAATATGAACTCCAAGCAAACGATGAGGAGGACGAGGGGAAGGACGAG
GGAGAAGAAGAGGAGGATCGGTTGTTAAACGTTTACTCCAGAAGAAGATG
GAGCCGGTTGGAGACGGTAACTAGAGGAAGGGAGGGAGGAAGGGATTGAG
GGGCAGAACTGTGTGTCCATGCCCCTTTGAAATATGTTCTTTTTACTTCT
AAAACCAATGAGGAGGGTACAGTTTATTTCACGTGGCTGCTCTAAAAAAC
GCAGCAATGTTTATTACCCTGTTATTCCTCTTTCCTCTTCTCCCCCATTC
CTCCACACTTTATAGATGGAAATTGAGAGCGGTCGCAAGACACCCACAAG
AGGTCCTGGCACCCGCTCCACCTCCTCCTATAGAAGCCTCGGCACGCAGG
ACTCTTCCTCTTTCGGCGCATCGCCAGGAGAAGCAGCAACAGCAGGAGCG
GGAGGAGGAGGGGGAGCAGCAGCAGCAGCAGGAGCGACGCACAACCCTCC
GCGTTTTCCCTCCTCCTCTTCTTCCTCCACTTATTCCTCGGGCGCGGCGA
GATGGAGAAGCCCATTGAATATTTTGGTGTCGACCAGGAATGTTATGAGC
CAGATAATGACCTTCTCGAGGGGAGGGATGGAGTGTCCGTTGCCTTTCTT
GTGCGACGAGGACCATCCCGATCCATGTGTAAGTAATGAAGTAATTGTAT
GATTAATGTGAAGGGTGTCAAAGAATGAATGCAGATATGTCCGTTTGTCG
ACGATTTCGTCTGCCAACTCAACCCCAACCTCATCACGTGTCTTGGCTCT
CTCCTCCCCTCGCTCCCTCACTCGCTTCCTTCCTCTCGCCCCCACAGGAA
TGCCTCTGCAATCTCATACAGATGCCCCGCGTCCCCGCCGCCCGCCATCA
CTACCTCATCTATCGCTCACCAGCTCCTATCGCCTATTCCTCCTCCTCCC
TTCCTTCTTCGTCCTCGTCAAGAAATGAGCGAATTTATACGATTGGCCCG
CATTGGGCAGGTCTTGTTTTTACCATATTTTTGGTCTGTCTGGCTTCGTA
TTTGTTCATCACCCACGTCGCTCTCGAGCTTGGCTCGATCTTCGTAGGTA
TTGCATGTGTGTACACATTCCTGACTTTGGCGACGCTCTTAAGAACTGCC
TGTCTGGACCCCGGGTTTATCACTCGCTCGGTTCCTCCCTCCCTCCCTCG
TCGTAAATTCTGCCAGGTGTGTCGGTTGTACACAGGACCTACCGCCCAGC
ACTGCGAGGACTGCAAAGTGTGCATAGAAGGGCTGGATCATCACTGCCCG
TGGATGGGACACTGTGTGGGGAAGGGGAATCTAGGCGCGTTTTTGTGTTT
CAATTGCGTGTGGTTGACCTACGTGTTGTTCGTGCTTGGATGTTTGGCAG
CGCAGGGTGGGGTGTTTGGGAGGGAGGGGGCGGGAGCTGGAGGCATGAAA
GGAGGGAAGTAGAGTGCCCCTTATTTCTGTCTTCTTGTTTTTGATCAATG
CAAGTAGAGAAAGAAGGTGCCAATTAAGGTCAGGTGTGTTCGGAAGACTC
TGAGTGTCGTGCGGGATGAAAGCCGCTACTGACAAGTTGTGCAGTCTGGA
GGACGCACTAACGAACGAAGGGGGAAGTGTTCAACTCGTCAGACACGTAG
GGAATGAGCGCCAAGCATTTTCTTATTTACCTTGGACTTTTGTGATTGGT
TAATTGTTCAACCCTACGTTGTATGTAGAGCGCGTATGTGGGCATGGGCA
AGGGAATGAAGAAATTCGAAGGTTATGGGGAAGTGGACGAGCGAGAGGAG
ACGAGCGAAAATGGATGAAAGATTCGAAATAGAAAAGCAGCCCATGACGA
GGCAAATTGATCATCAAACGAGCGTGGCGTCGATACTTTATTTTTCGGCA
AAGTGTTCGAGAAATGAAAGCGTATAATGGAAATTAGAAGAGGCGAAATG
ATATCAAGGGCTTTAAATCAGAGAAAAGGTGAGAAAATCTGAGAGGCGAC
AAGCATCCGG

Coding sequence (CDS) from alignment at chr22:262468..265727+

>NO22G00800.1 ID=NO22G00800.1|Name=NO22G00800.1|organism=Nannochloropsis oceanica|type=CDS|length=1191bp|location=Sequence derived from alignment at chr22:262468..265727+ (Nannochloropsis oceanica)
ATGCTCTCCCCCATTGCCGAGTCCCCACAGAAGGAGCGGGCAGCGGAGCA
AGACGAGGAAGAGGGAATAACAGCGACTGTGCGAGCGCGTGCACAACATA
AATATGAACTCCAAGCAAACGATGAGGAGGACGAGGGGAAGGACGAGGGA
GAAGAAGAGGAGGATCGGTTGTTAAACGTTTACTCCAGAAGAAGATGGAG
CCGGTTGGAGACGATGGAAATTGAGAGCGGTCGCAAGACACCCACAAGAG
GTCCTGGCACCCGCTCCACCTCCTCCTATAGAAGCCTCGGCACGCAGGAC
TCTTCCTCTTTCGGCGCATCGCCAGGAGAAGCAGCAACAGCAGGAGCGGG
AGGAGGAGGGGGAGCAGCAGCAGCAGCAGGAGCGACGCACAACCCTCCGC
GTTTTCCCTCCTCCTCTTCTTCCTCCACTTATTCCTCGGGCGCGGCGAGA
TGGAGAAGCCCATTGAATATTTTGGTGTCGACCAGGAATGTTATGAGCCA
GATAATGACCTTCTCGAGGGGAGGGATGGAGTGTCCGTTGCCTTTCTTGT
GCGACGAGGACCATCCCGATCCATGTGAATGCCTCTGCAATCTCATACAG
ATGCCCCGCGTCCCCGCCGCCCGCCATCACTACCTCATCTATCGCTCACC
AGCTCCTATCGCCTATTCCTCCTCCTCCCTTCCTTCTTCGTCCTCGTCAA
GAAATGAGCGAATTTATACGATTGGCCCGCATTGGGCAGGTCTTGTTTTT
ACCATATTTTTGGTCTGTCTGGCTTCGTATTTGTTCATCACCCACGTCGC
TCTCGAGCTTGGCTCGATCTTCGTAGGTATTGCATGTGTGTACACATTCC
TGACTTTGGCGACGCTCTTAAGAACTGCCTGTCTGGACCCCGGGTTTATC
ACTCGCTCGGTTCCTCCCTCCCTCCCTCGTCGTAAATTCTGCCAGGTGTG
TCGGTTGTACACAGGACCTACCGCCCAGCACTGCGAGGACTGCAAAGTGT
GCATAGAAGGGCTGGATCATCACTGCCCGTGGATGGGACACTGTGTGGGG
AAGGGGAATCTAGGCGCGTTTTTGTGTTTCAATTGCGTGTGGTTGACCTA
CGTGTTGTTCGTGCTTGGATGTTTGGCAGCGCAGGGTGGGGTGTTTGGGA
GGGAGGGGGCGGGAGCTGGAGGCATGAAAGGAGGGAAGTAG

Synonyms

Publications