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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr22 | genome | chr22:254187..256635 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO22G00780.1 vs.
Match: EWM21421.1 (fad synthetase [Nannochloropsis gaditana]) HSP 1 Score: 887.9 bits (2293), Expect = 2.200e-254 Identity = 488/728 (67.03%), Postives = 544/728 (74.73%), Query Frame = 0
Query: 54 TRLRQTFAFFLLACRCSRTLSFFHPPTPGRSTLH-----ATSPSPLLPIPFRIRMDSSLFSTATST--STASVSSESEDGQDREAYEDALFLYKRMRADDDPHISTQLHTALDVVEQALRLYGPSHVFASYNGGKDAVVVMHLLRVALAHYVQAHELDEP-------SSSSSTTSTVPRPRLVYFEQPSTEFPEVKALVTQTTQRYDLDLKVYQNVPFAQGLKACIESEGGAPLAFLLGTRKGDPNCKEQETFAPSSTWMPAFMRVNPILNWTYGDIWHFLRKFNLPYCSLYDQGYTSLGKVDDTLPNPALA----------------VGKTEGGGYYPAHMLTDWSLERAGRVDKKKEATARVVAADGGGIGEGEECDAIEAAAAAVAAAAGAAGAPTPPPKGSHNDKA--------------------DVKTAGLIIIGDEILKGKTSDTNSLYAARRLRERGVSVQRISVLSDAHADIEAEVRVQAAKFDIVITSGGVGPTHDDITIKAVASALGQGVSENEEMIGKLQEAYGVATREELSDGQRKMALLPDHARLRVPPPPP-PPPHPLPP-----------AGASTAAVAVGTTGTKKVWPVLMCGNVYVLPGVPSFFEQKMDTIVDHFLNHSPIYTRKVVLEVDEVEIVEPLNRAVAEFEKQGCVFGSYPFYGEACPRVVITLESTDEAMVEAAKDFFLGCIPPGHVLHVGEDDDLRGREGE 720
T +RQ F AC S T SF+ P R+ H A +P L +PF RM +S+ ST+T+T S A V+S S GQDR AY+DAL LYK +RADDD ++ ++HTALDVVEQALRLYGPSHVFASYNGGKDAVVVMHLLR ALA +VQA++LD P SS SS ST+PRPRLVYFEQPSTEFPEVKALV+QTTQRYDLDL+VYQ+VPFAQGLKACIE EGGAPLAFLLGTRKGDPNCKEQETFAPSSTWMPAFMRVNPIL+WTYG+IWHFLR++NLPYCSLYDQGYTSLGKVDDT PNPALA G GG +YPA+MLTDW LERAGRVDKKKEATAR V+ G EG+ C A+E AAAA A AA TP + K VKTAGL+IIGDEILKGKTSDTNSLYAARRLRE+GV+VQRI VLSD HADIE EVR QA+ FD+VITSGGVGPTHDD+TIKAVA+ALGQGV ENEEMI +LQ+AYGVA+R++LS+GQRKMALLP+ ARLRVPPPPP P P P PP A +TAA V KVWP+LMCGNVYVLPGVPSFFE KMDTIVDHFLNH PIYTRK+VL +DEVEIVE LN+AVA FE +GCVFGSYPFYGE PRVVITLES E VEAA F + IP VL VG+DDDLRG EG+
Sbjct: 6 TGVRQIFVLLHFACLWSSTWSFWAKPVLRRNLDHRAIGAAFAPCSPLRLPFT-RMQASILSTSTATPVSGALVNSTSASGQDRGAYDDALTLYKTLRADDDSSMADKVHTALDVVEQALRLYGPSHVFASYNGGKDAVVVMHLLRAALARHVQAYDLDSPAPADTASSSPSSGPSTIPRPRLVYFEQPSTEFPEVKALVSQTTQRYDLDLRVYQDVPFAQGLKACIEGEGGAPLAFLLGTRKGDPNCKEQETFAPSSTWMPAFMRVNPILSWTYGEIWHFLRRYNLPYCSLYDQGYTSLGKVDDTRPNPALAKSRARDDAQEGGEGGGAGGVGGGEFYPAYMLTDWDLERAGRVDKKKEATARAVSNKG---VEGDGCRAVEEAAAAAAKAAAQGEGKTPVMSAKASSKGWNKASGGQSKEAAEGGGSRESVKTAGLVIIGDEILKGKTSDTNSLYAARRLREKGVAVQRIVVLSDNHADIEQEVRRQASLFDVVITSGGVGPTHDDLTIKAVAAALGQGVQENEEMIQRLQDAYGVASRDDLSEGQRKMALLPEQARLRVPPPPPSPTPAPTPPSAFTTEAATVAATTATAAAVVAVASKTKVWPILMCGNVYVLPGVPSFFEAKMDTIVDHFLNHFPIYTRKIVLGLDEVEIVEALNQAVAHFEPEGCVFGSYPFYGETRPRVVITLESGCEKTVEAATAFLIESIPKEAVLQVGKDDDLRGGEGQ 729
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO22G00780.1 ID=NO22G00780.1|Name=NO22G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2205bp ATGTTTCGTGTGCGTGTTGAGACGGAGGATATTTTGGAGGAGGAGCAGCA GCAGCAGCAGCAGCAGCAGCAGAGCAGCAGCAGCAGCATAAGCAGCAGAA GCAGAGGAAGCAGCAGCAGCAAGCCCTTCTACCTCCCGCCAATGCTGTGC TCGTCTACAACCAGGCTTAGGCAGACGTTTGCATTTTTTCTCCTAGCTTG TCGTTGTTCCAGGACCTTGTCATTTTTCCATCCCCCCACCCCTGGCCGCA GCACCCTGCACGCCACCTCTCCCTCTCCTCTTCTTCCCATCCCATTCCGC ATCCGAATGGATTCCTCCCTTTTCTCTACCGCCACATCCACTTCGACTGC ATCAGTCTCATCCGAAAGCGAAGACGGCCAAGACCGAGAGGCCTACGAAG ATGCCTTGTTCCTCTACAAACGCATGCGCGCCGACGATGACCCTCACATA AGCACCCAACTCCACACCGCCCTCGACGTCGTCGAACAAGCCCTACGACT CTACGGACCCTCCCACGTCTTCGCTTCATACAACGGAGGGAAGGACGCCG TGGTCGTTATGCATCTCCTTCGTGTCGCCTTGGCCCATTATGTACAGGCC CACGAGCTTGACGAGCCCTCCTCATCCTCCTCCACCACTTCAACTGTCCC TCGTCCCCGCCTCGTCTACTTCGAACAGCCCTCCACGGAATTCCCAGAAG TCAAGGCCCTTGTCACACAAACCACCCAACGCTACGACCTGGACCTTAAA GTCTACCAAAATGTCCCCTTCGCTCAAGGTCTCAAGGCCTGTATCGAATC AGAGGGTGGAGCCCCCCTGGCTTTCCTCCTTGGAACGCGCAAGGGAGATC CGAACTGCAAGGAGCAGGAGACCTTCGCACCCAGTAGTACCTGGATGCCG GCATTCATGCGGGTCAACCCGATATTGAACTGGACATATGGGGATATCTG GCACTTTTTAAGGAAGTTTAATCTGCCTTATTGCTCGCTGTATGATCAAG GATACACGAGCCTGGGCAAGGTGGATGACACGCTACCTAACCCGGCGTTG GCCGTGGGGAAGACGGAGGGAGGGGGGTATTACCCGGCCCATATGCTGAC GGATTGGTCGTTGGAGCGGGCGGGGAGAGTGGACAAGAAGAAGGAGGCGA CGGCACGCGTAGTTGCTGCGGATGGTGGGGGGATCGGGGAAGGAGAGGAG TGCGACGCCATCGAAGCAGCGGCAGCAGCAGTAGCGGCAGCAGCAGGAGC AGCGGGGGCGCCTACGCCCCCGCCTAAGGGTAGTCATAATGATAAGGCGG ACGTCAAGACTGCAGGCCTCATAATCATCGGCGACGAGATTCTAAAGGGG AAAACCTCCGACACGAATTCCTTATACGCCGCGCGTCGTTTACGAGAACG CGGGGTTTCCGTGCAGCGCATCTCGGTACTGTCCGATGCGCATGCAGATA TCGAAGCAGAAGTGCGTGTGCAAGCCGCGAAATTTGACATTGTGATAACG AGCGGCGGAGTCGGACCCACGCACGATGACATCACAATCAAGGCAGTGGC CTCGGCTTTGGGACAGGGGGTGAGCGAGAATGAGGAAATGATCGGCAAAT TGCAAGAGGCCTACGGTGTGGCAACGAGGGAAGAACTGAGTGATGGGCAG CGAAAAATGGCCCTCCTCCCCGACCATGCCCGCCTGCGGGTCCCTCCTCC TCCTCCTCCTCCTCCTCATCCACTTCCACCAGCAGGAGCATCGACAGCAG CAGTAGCAGTAGGGACGACCGGGACCAAAAAGGTCTGGCCGGTGTTGATG TGTGGGAATGTCTATGTCCTTCCGGGGGTGCCGTCGTTTTTCGAACAGAA GATGGATACGATTGTGGATCATTTCCTCAATCATTCTCCTATCTATACTC GTAAGGTTGTTCTAGAGGTGGATGAAGTCGAAATCGTCGAGCCTTTGAAT CGGGCGGTGGCAGAGTTCGAGAAACAGGGGTGCGTGTTCGGTTCTTACCC TTTTTATGGCGAGGCGTGCCCGAGGGTGGTGATAACGTTGGAAAGCACGG ATGAGGCTATGGTGGAGGCAGCGAAAGATTTCTTCTTGGGATGCATTCCG CCTGGACATGTGCTGCATGTAGGCGAGGATGATGACCTGAGGGGACGGGA GGGGGAGGGAAATATGATGACACCGGCGGCCGTTGAGTCAGCGAATCTGA CGTGA back to topprotein sequence of NO22G00780.1 >NO22G00780.1-protein ID=NO22G00780.1-protein|Name=NO22G00780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=735bp MFRVRVETEDILEEEQQQQQQQQQSSSSSISSRSRGSSSSKPFYLPPMLC SSTTRLRQTFAFFLLACRCSRTLSFFHPPTPGRSTLHATSPSPLLPIPFR IRMDSSLFSTATSTSTASVSSESEDGQDREAYEDALFLYKRMRADDDPHI STQLHTALDVVEQALRLYGPSHVFASYNGGKDAVVVMHLLRVALAHYVQA HELDEPSSSSSTTSTVPRPRLVYFEQPSTEFPEVKALVTQTTQRYDLDLK VYQNVPFAQGLKACIESEGGAPLAFLLGTRKGDPNCKEQETFAPSSTWMP AFMRVNPILNWTYGDIWHFLRKFNLPYCSLYDQGYTSLGKVDDTLPNPAL AVGKTEGGGYYPAHMLTDWSLERAGRVDKKKEATARVVAADGGGIGEGEE CDAIEAAAAAVAAAAGAAGAPTPPPKGSHNDKADVKTAGLIIIGDEILKG KTSDTNSLYAARRLRERGVSVQRISVLSDAHADIEAEVRVQAAKFDIVIT SGGVGPTHDDITIKAVASALGQGVSENEEMIGKLQEAYGVATREELSDGQ RKMALLPDHARLRVPPPPPPPPHPLPPAGASTAAVAVGTTGTKKVWPVLM CGNVYVLPGVPSFFEQKMDTIVDHFLNHSPIYTRKVVLEVDEVEIVEPLN RAVAEFEKQGCVFGSYPFYGEACPRVVITLESTDEAMVEAAKDFFLGCIP PGHVLHVGEDDDLRGREGEGNMMTPAAVESANLT* back to topmRNA from alignment at chr22:254187..256635+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO22G00780.1 ID=NO22G00780.1|Name=NO22G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2449bp|location=Sequence derived from alignment at chr22:254187..256635+ (Nannochloropsis oceanica) ATGTTTCGTGTGCGTGGTAGAGCGCGTGAGAAGGCGGCGGGCATTGGAAC
TACCATCACATCGCTTTTTCCATCGATATAATGCTTCTCTCCCTCTCTCC
GATGCCCCCGCGCATCCCCATCTGCATTCCCGCTGTCATTTTTCTCCACC
ATTTACCTCTTCCCCGCCCCATCACCATATCTACAGGTCTTTCTTCTCTA
AAGTATCACGGTTGCTTGTGCTTGGGGCGAGTTACTGCGTAAGTGTCGCT
TTGTTTTCAGTTGAGACGGAGGATATTTTGGAGGAGGAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGAGCAGCAGCAGCAGCATAAGCAGCAGAAGCAGAG
GAAGCAGCAGCAGCAAGCCCTTCTACCTCCCGCCAATGCTGTGCTCGTCT
ACAACCAGGCTTAGGCAGACGTTTGCATTTTTTCTCCTAGCTTGTCGTTG
TTCCAGGACCTTGTCATTTTTCCATCCCCCCACCCCTGGCCGCAGCACCC
TGCACGCCACCTCTCCCTCTCCTCTTCTTCCCATCCCATTCCGCATCCGA
ATGGATTCCTCCCTTTTCTCTACCGCCACATCCACTTCGACTGCATCAGT
CTCATCCGAAAGCGAAGACGGCCAAGACCGAGAGGCCTACGAAGATGCCT
TGTTCCTCTACAAACGCATGCGCGCCGACGATGACCCTCACATAAGCACC
CAACTCCACACCGCCCTCGACGTCGTCGAACAAGCCCTACGACTCTACGG
ACCCTCCCACGTCTTCGCTTCATACAACGGAGGGAAGGACGCCGTGGTCG
TTATGCATCTCCTTCGTGTCGCCTTGGCCCATTATGTACAGGCCCACGAG
CTTGACGAGCCCTCCTCATCCTCCTCCACCACTTCAACTGTCCCTCGTCC
CCGCCTCGTCTACTTCGAACAGCCCTCCACGGAATTCCCAGAAGTCAAGG
CCCTTGTCACACAAACCACCCAACGCTACGACCTGGACCTTAAAGTCTAC
CAAAATGTCCCCTTCGCTCAAGGTCTCAAGGCCTGTATCGAATCAGAGGG
TGGAGCCCCCCTGGCTTTCCTCCTTGGAACGCGCAAGGGAGATCCGAACT
GCAAGGAGCAGGAGACCTTCGCACCCAGTAGTACCTGGATGCCGGCATTC
ATGCGGGTCAACCCGATATTGAACTGGACATATGGGGATATCTGGCACTT
TTTAAGGAAGTTTAATCTGCCTTATTGCTCGCTGTATGATCAAGGATACA
CGAGCCTGGGCAAGGTGGATGACACGCTACCTAACCCGGCGTTGGCCGTG
GGGAAGACGGAGGGAGGGGGGTATTACCCGGCCCATATGCTGACGGATTG
GTCGTTGGAGCGGGCGGGGAGAGTGGACAAGAAGAAGGAGGCGACGGCAC
GCGTAGTTGCTGCGGATGGTGGGGGGATCGGGGAAGGAGAGGAGTGCGAC
GCCATCGAAGCAGCGGCAGCAGCAGTAGCGGCAGCAGCAGGAGCAGCGGG
GGCGCCTACGCCCCCGCCTAAGGGTAGTCATAATGATAAGGCGGACGTCA
AGACTGCAGGCCTCATAATCATCGGCGACGAGATTCTAAAGGGGAAAACC
TCCGACACGAATTCCTTATACGCCGCGCGTCGTTTACGAGAACGCGGGGT
TTCCGTGCAGCGCATCTCGGTACTGTCCGATGCGCATGCAGATATCGAAG
CAGAAGTGCGTGTGCAAGCCGCGAAATTTGACATTGTGATAACGAGCGGC
GGAGTCGGACCCACGCACGATGACATCACAATCAAGGCAGTGGCCTCGGC
TTTGGGACAGGGGGTGAGCGAGAATGAGGAAATGATCGGCAAATTGCAAG
AGGCCTACGGTGTGGCAACGAGGGAAGAACTGAGTGATGGGCAGCGAAAA
ATGGCCCTCCTCCCCGACCATGCCCGCCTGCGGGTCCCTCCTCCTCCTCC
TCCTCCTCCTCATCCACTTCCACCAGCAGGAGCATCGACAGCAGCAGTAG
CAGTAGGGACGACCGGGACCAAAAAGGTCTGGCCGGTGTTGATGTGTGGG
AATGTCTATGTCCTTCCGGGGGTGCCGTCGTTTTTCGAACAGAAGATGGA
TACGATTGTGGATCATTTCCTCAATCATTCTCCTATCTATACTCGTAAGG
TTGTTCTAGAGGTGGATGAAGTCGAAATCGTCGAGCCTTTGAATCGGGCG
GTGGCAGAGTTCGAGAAACAGGGGTGCGTGTTCGGTTCTTACCCTTTTTA
TGGCGAGGCGTGCCCGAGGGTGGTGATAACGTTGGAAAGCACGGATGAGG
CTATGGTGGAGGCAGCGAAAGATTTCTTCTTGGGATGCATTCCGCCTGGA
CATGTGCTGCATGTAGGCGAGGATGATGACCTGAGGGGACGGGAGGGGGA
GGGAAATATGATGACACCGGCGGCCGTTGAGTCAGCGAATCTGACGTGA back to topCoding sequence (CDS) from alignment at chr22:254187..256635+ >NO22G00780.1 ID=NO22G00780.1|Name=NO22G00780.1|organism=Nannochloropsis oceanica|type=CDS|length=2205bp|location=Sequence derived from alignment at chr22:254187..256635+ (Nannochloropsis oceanica) ATGTTTCGTGTGCGTGTTGAGACGGAGGATATTTTGGAGGAGGAGCAGCA GCAGCAGCAGCAGCAGCAGCAGAGCAGCAGCAGCAGCATAAGCAGCAGAA GCAGAGGAAGCAGCAGCAGCAAGCCCTTCTACCTCCCGCCAATGCTGTGC TCGTCTACAACCAGGCTTAGGCAGACGTTTGCATTTTTTCTCCTAGCTTG TCGTTGTTCCAGGACCTTGTCATTTTTCCATCCCCCCACCCCTGGCCGCA GCACCCTGCACGCCACCTCTCCCTCTCCTCTTCTTCCCATCCCATTCCGC ATCCGAATGGATTCCTCCCTTTTCTCTACCGCCACATCCACTTCGACTGC ATCAGTCTCATCCGAAAGCGAAGACGGCCAAGACCGAGAGGCCTACGAAG ATGCCTTGTTCCTCTACAAACGCATGCGCGCCGACGATGACCCTCACATA AGCACCCAACTCCACACCGCCCTCGACGTCGTCGAACAAGCCCTACGACT CTACGGACCCTCCCACGTCTTCGCTTCATACAACGGAGGGAAGGACGCCG TGGTCGTTATGCATCTCCTTCGTGTCGCCTTGGCCCATTATGTACAGGCC CACGAGCTTGACGAGCCCTCCTCATCCTCCTCCACCACTTCAACTGTCCC TCGTCCCCGCCTCGTCTACTTCGAACAGCCCTCCACGGAATTCCCAGAAG TCAAGGCCCTTGTCACACAAACCACCCAACGCTACGACCTGGACCTTAAA GTCTACCAAAATGTCCCCTTCGCTCAAGGTCTCAAGGCCTGTATCGAATC AGAGGGTGGAGCCCCCCTGGCTTTCCTCCTTGGAACGCGCAAGGGAGATC CGAACTGCAAGGAGCAGGAGACCTTCGCACCCAGTAGTACCTGGATGCCG GCATTCATGCGGGTCAACCCGATATTGAACTGGACATATGGGGATATCTG GCACTTTTTAAGGAAGTTTAATCTGCCTTATTGCTCGCTGTATGATCAAG GATACACGAGCCTGGGCAAGGTGGATGACACGCTACCTAACCCGGCGTTG GCCGTGGGGAAGACGGAGGGAGGGGGGTATTACCCGGCCCATATGCTGAC GGATTGGTCGTTGGAGCGGGCGGGGAGAGTGGACAAGAAGAAGGAGGCGA CGGCACGCGTAGTTGCTGCGGATGGTGGGGGGATCGGGGAAGGAGAGGAG TGCGACGCCATCGAAGCAGCGGCAGCAGCAGTAGCGGCAGCAGCAGGAGC AGCGGGGGCGCCTACGCCCCCGCCTAAGGGTAGTCATAATGATAAGGCGG ACGTCAAGACTGCAGGCCTCATAATCATCGGCGACGAGATTCTAAAGGGG AAAACCTCCGACACGAATTCCTTATACGCCGCGCGTCGTTTACGAGAACG CGGGGTTTCCGTGCAGCGCATCTCGGTACTGTCCGATGCGCATGCAGATA TCGAAGCAGAAGTGCGTGTGCAAGCCGCGAAATTTGACATTGTGATAACG AGCGGCGGAGTCGGACCCACGCACGATGACATCACAATCAAGGCAGTGGC CTCGGCTTTGGGACAGGGGGTGAGCGAGAATGAGGAAATGATCGGCAAAT TGCAAGAGGCCTACGGTGTGGCAACGAGGGAAGAACTGAGTGATGGGCAG CGAAAAATGGCCCTCCTCCCCGACCATGCCCGCCTGCGGGTCCCTCCTCC TCCTCCTCCTCCTCCTCATCCACTTCCACCAGCAGGAGCATCGACAGCAG CAGTAGCAGTAGGGACGACCGGGACCAAAAAGGTCTGGCCGGTGTTGATG TGTGGGAATGTCTATGTCCTTCCGGGGGTGCCGTCGTTTTTCGAACAGAA GATGGATACGATTGTGGATCATTTCCTCAATCATTCTCCTATCTATACTC GTAAGGTTGTTCTAGAGGTGGATGAAGTCGAAATCGTCGAGCCTTTGAAT CGGGCGGTGGCAGAGTTCGAGAAACAGGGGTGCGTGTTCGGTTCTTACCC TTTTTATGGCGAGGCGTGCCCGAGGGTGGTGATAACGTTGGAAAGCACGG ATGAGGCTATGGTGGAGGCAGCGAAAGATTTCTTCTTGGGATGCATTCCG CCTGGACATGTGCTGCATGTAGGCGAGGATGATGACCTGAGGGGACGGGA GGGGGAGGGAAATATGATGACACCGGCGGCCGTTGAGTCAGCGAATCTGA CGTGA back to top
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