NO22G00780.1, NO22G00780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00780.1
Unique NameNO22G00780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2205
Alignment locationchr22:254187..256635 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:254187..256635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO22G00780.1 vs.
Match: EWM21421.1 (fad synthetase [Nannochloropsis gaditana])

HSP 1 Score: 887.9 bits (2293), Expect = 2.200e-254
Identity = 488/728 (67.03%), Postives = 544/728 (74.73%), Query Frame = 0
Query:   54 TRLRQTFAFFLLACRCSRTLSFFHPPTPGRSTLH-----ATSPSPLLPIPFRIRMDSSLFSTATST--STASVSSESEDGQDREAYEDALFLYKRMRADDDPHISTQLHTALDVVEQALRLYGPSHVFASYNGGKDAVVVMHLLRVALAHYVQAHELDEP-------SSSSSTTSTVPRPRLVYFEQPSTEFPEVKALVTQTTQRYDLDLKVYQNVPFAQGLKACIESEGGAPLAFLLGTRKGDPNCKEQETFAPSSTWMPAFMRVNPILNWTYGDIWHFLRKFNLPYCSLYDQGYTSLGKVDDTLPNPALA----------------VGKTEGGGYYPAHMLTDWSLERAGRVDKKKEATARVVAADGGGIGEGEECDAIEAAAAAVAAAAGAAGAPTPPPKGSHNDKA--------------------DVKTAGLIIIGDEILKGKTSDTNSLYAARRLRERGVSVQRISVLSDAHADIEAEVRVQAAKFDIVITSGGVGPTHDDITIKAVASALGQGVSENEEMIGKLQEAYGVATREELSDGQRKMALLPDHARLRVPPPPP-PPPHPLPP-----------AGASTAAVAVGTTGTKKVWPVLMCGNVYVLPGVPSFFEQKMDTIVDHFLNHSPIYTRKVVLEVDEVEIVEPLNRAVAEFEKQGCVFGSYPFYGEACPRVVITLESTDEAMVEAAKDFFLGCIPPGHVLHVGEDDDLRGREGE 720
            T +RQ F     AC  S T SF+  P   R+  H     A +P   L +PF  RM +S+ ST+T+T  S A V+S S  GQDR AY+DAL LYK +RADDD  ++ ++HTALDVVEQALRLYGPSHVFASYNGGKDAVVVMHLLR ALA +VQA++LD P       SS SS  ST+PRPRLVYFEQPSTEFPEVKALV+QTTQRYDLDL+VYQ+VPFAQGLKACIE EGGAPLAFLLGTRKGDPNCKEQETFAPSSTWMPAFMRVNPIL+WTYG+IWHFLR++NLPYCSLYDQGYTSLGKVDDT PNPALA                 G   GG +YPA+MLTDW LERAGRVDKKKEATAR V+  G    EG+ C A+E AAAA A AA      TP      + K                      VKTAGL+IIGDEILKGKTSDTNSLYAARRLRE+GV+VQRI VLSD HADIE EVR QA+ FD+VITSGGVGPTHDD+TIKAVA+ALGQGV ENEEMI +LQ+AYGVA+R++LS+GQRKMALLP+ ARLRVPPPPP P P P PP           A  +TAA  V      KVWP+LMCGNVYVLPGVPSFFE KMDTIVDHFLNH PIYTRK+VL +DEVEIVE LN+AVA FE +GCVFGSYPFYGE  PRVVITLES  E  VEAA  F +  IP   VL VG+DDDLRG EG+
Sbjct:    6 TGVRQIFVLLHFACLWSSTWSFWAKPVLRRNLDHRAIGAAFAPCSPLRLPFT-RMQASILSTSTATPVSGALVNSTSASGQDRGAYDDALTLYKTLRADDDSSMADKVHTALDVVEQALRLYGPSHVFASYNGGKDAVVVMHLLRAALARHVQAYDLDSPAPADTASSSPSSGPSTIPRPRLVYFEQPSTEFPEVKALVSQTTQRYDLDLRVYQDVPFAQGLKACIEGEGGAPLAFLLGTRKGDPNCKEQETFAPSSTWMPAFMRVNPILSWTYGEIWHFLRRYNLPYCSLYDQGYTSLGKVDDTRPNPALAKSRARDDAQEGGEGGGAGGVGGGEFYPAYMLTDWDLERAGRVDKKKEATARAVSNKG---VEGDGCRAVEEAAAAAAKAAAQGEGKTPVMSAKASSKGWNKASGGQSKEAAEGGGSRESVKTAGLVIIGDEILKGKTSDTNSLYAARRLREKGVAVQRIVVLSDNHADIEQEVRRQASLFDVVITSGGVGPTHDDLTIKAVAAALGQGVQENEEMIQRLQDAYGVASRDDLSEGQRKMALLPEQARLRVPPPPPSPTPAPTPPSAFTTEAATVAATTATAAAVVAVASKTKVWPILMCGNVYVLPGVPSFFEAKMDTIVDHFLNHFPIYTRKIVLGLDEVEIVEALNQAVAHFEPEGCVFGSYPFYGETRPRVVITLESGCEKTVEAATAFLIESIPKEAVLQVGKDDDLRGGEGQ 729          
The following BLAST results are available for this feature:
BLAST of NO22G00780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21421.12.200e-25467.03fad synthetase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00780NO22G00780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00780.1NO22G00780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00780.1.cds1NO22G00780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00780.1.cds2NO22G00780.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00780.1 ID=NO22G00780.1|Name=NO22G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2205bp
ATGTTTCGTGTGCGTGTTGAGACGGAGGATATTTTGGAGGAGGAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGAGCAGCAGCAGCAGCATAAGCAGCAGAA
GCAGAGGAAGCAGCAGCAGCAAGCCCTTCTACCTCCCGCCAATGCTGTGC
TCGTCTACAACCAGGCTTAGGCAGACGTTTGCATTTTTTCTCCTAGCTTG
TCGTTGTTCCAGGACCTTGTCATTTTTCCATCCCCCCACCCCTGGCCGCA
GCACCCTGCACGCCACCTCTCCCTCTCCTCTTCTTCCCATCCCATTCCGC
ATCCGAATGGATTCCTCCCTTTTCTCTACCGCCACATCCACTTCGACTGC
ATCAGTCTCATCCGAAAGCGAAGACGGCCAAGACCGAGAGGCCTACGAAG
ATGCCTTGTTCCTCTACAAACGCATGCGCGCCGACGATGACCCTCACATA
AGCACCCAACTCCACACCGCCCTCGACGTCGTCGAACAAGCCCTACGACT
CTACGGACCCTCCCACGTCTTCGCTTCATACAACGGAGGGAAGGACGCCG
TGGTCGTTATGCATCTCCTTCGTGTCGCCTTGGCCCATTATGTACAGGCC
CACGAGCTTGACGAGCCCTCCTCATCCTCCTCCACCACTTCAACTGTCCC
TCGTCCCCGCCTCGTCTACTTCGAACAGCCCTCCACGGAATTCCCAGAAG
TCAAGGCCCTTGTCACACAAACCACCCAACGCTACGACCTGGACCTTAAA
GTCTACCAAAATGTCCCCTTCGCTCAAGGTCTCAAGGCCTGTATCGAATC
AGAGGGTGGAGCCCCCCTGGCTTTCCTCCTTGGAACGCGCAAGGGAGATC
CGAACTGCAAGGAGCAGGAGACCTTCGCACCCAGTAGTACCTGGATGCCG
GCATTCATGCGGGTCAACCCGATATTGAACTGGACATATGGGGATATCTG
GCACTTTTTAAGGAAGTTTAATCTGCCTTATTGCTCGCTGTATGATCAAG
GATACACGAGCCTGGGCAAGGTGGATGACACGCTACCTAACCCGGCGTTG
GCCGTGGGGAAGACGGAGGGAGGGGGGTATTACCCGGCCCATATGCTGAC
GGATTGGTCGTTGGAGCGGGCGGGGAGAGTGGACAAGAAGAAGGAGGCGA
CGGCACGCGTAGTTGCTGCGGATGGTGGGGGGATCGGGGAAGGAGAGGAG
TGCGACGCCATCGAAGCAGCGGCAGCAGCAGTAGCGGCAGCAGCAGGAGC
AGCGGGGGCGCCTACGCCCCCGCCTAAGGGTAGTCATAATGATAAGGCGG
ACGTCAAGACTGCAGGCCTCATAATCATCGGCGACGAGATTCTAAAGGGG
AAAACCTCCGACACGAATTCCTTATACGCCGCGCGTCGTTTACGAGAACG
CGGGGTTTCCGTGCAGCGCATCTCGGTACTGTCCGATGCGCATGCAGATA
TCGAAGCAGAAGTGCGTGTGCAAGCCGCGAAATTTGACATTGTGATAACG
AGCGGCGGAGTCGGACCCACGCACGATGACATCACAATCAAGGCAGTGGC
CTCGGCTTTGGGACAGGGGGTGAGCGAGAATGAGGAAATGATCGGCAAAT
TGCAAGAGGCCTACGGTGTGGCAACGAGGGAAGAACTGAGTGATGGGCAG
CGAAAAATGGCCCTCCTCCCCGACCATGCCCGCCTGCGGGTCCCTCCTCC
TCCTCCTCCTCCTCCTCATCCACTTCCACCAGCAGGAGCATCGACAGCAG
CAGTAGCAGTAGGGACGACCGGGACCAAAAAGGTCTGGCCGGTGTTGATG
TGTGGGAATGTCTATGTCCTTCCGGGGGTGCCGTCGTTTTTCGAACAGAA
GATGGATACGATTGTGGATCATTTCCTCAATCATTCTCCTATCTATACTC
GTAAGGTTGTTCTAGAGGTGGATGAAGTCGAAATCGTCGAGCCTTTGAAT
CGGGCGGTGGCAGAGTTCGAGAAACAGGGGTGCGTGTTCGGTTCTTACCC
TTTTTATGGCGAGGCGTGCCCGAGGGTGGTGATAACGTTGGAAAGCACGG
ATGAGGCTATGGTGGAGGCAGCGAAAGATTTCTTCTTGGGATGCATTCCG
CCTGGACATGTGCTGCATGTAGGCGAGGATGATGACCTGAGGGGACGGGA
GGGGGAGGGAAATATGATGACACCGGCGGCCGTTGAGTCAGCGAATCTGA
CGTGA
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protein sequence of NO22G00780.1

>NO22G00780.1-protein ID=NO22G00780.1-protein|Name=NO22G00780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=735bp
MFRVRVETEDILEEEQQQQQQQQQSSSSSISSRSRGSSSSKPFYLPPMLC
SSTTRLRQTFAFFLLACRCSRTLSFFHPPTPGRSTLHATSPSPLLPIPFR
IRMDSSLFSTATSTSTASVSSESEDGQDREAYEDALFLYKRMRADDDPHI
STQLHTALDVVEQALRLYGPSHVFASYNGGKDAVVVMHLLRVALAHYVQA
HELDEPSSSSSTTSTVPRPRLVYFEQPSTEFPEVKALVTQTTQRYDLDLK
VYQNVPFAQGLKACIESEGGAPLAFLLGTRKGDPNCKEQETFAPSSTWMP
AFMRVNPILNWTYGDIWHFLRKFNLPYCSLYDQGYTSLGKVDDTLPNPAL
AVGKTEGGGYYPAHMLTDWSLERAGRVDKKKEATARVVAADGGGIGEGEE
CDAIEAAAAAVAAAAGAAGAPTPPPKGSHNDKADVKTAGLIIIGDEILKG
KTSDTNSLYAARRLRERGVSVQRISVLSDAHADIEAEVRVQAAKFDIVIT
SGGVGPTHDDITIKAVASALGQGVSENEEMIGKLQEAYGVATREELSDGQ
RKMALLPDHARLRVPPPPPPPPHPLPPAGASTAAVAVGTTGTKKVWPVLM
CGNVYVLPGVPSFFEQKMDTIVDHFLNHSPIYTRKVVLEVDEVEIVEPLN
RAVAEFEKQGCVFGSYPFYGEACPRVVITLESTDEAMVEAAKDFFLGCIP
PGHVLHVGEDDDLRGREGEGNMMTPAAVESANLT*
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mRNA from alignment at chr22:254187..256635+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00780.1 ID=NO22G00780.1|Name=NO22G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2449bp|location=Sequence derived from alignment at chr22:254187..256635+ (Nannochloropsis oceanica)
ATGTTTCGTGTGCGTGGTAGAGCGCGTGAGAAGGCGGCGGGCATTGGAAC TACCATCACATCGCTTTTTCCATCGATATAATGCTTCTCTCCCTCTCTCC GATGCCCCCGCGCATCCCCATCTGCATTCCCGCTGTCATTTTTCTCCACC ATTTACCTCTTCCCCGCCCCATCACCATATCTACAGGTCTTTCTTCTCTA AAGTATCACGGTTGCTTGTGCTTGGGGCGAGTTACTGCGTAAGTGTCGCT TTGTTTTCAGTTGAGACGGAGGATATTTTGGAGGAGGAGCAGCAGCAGCA GCAGCAGCAGCAGCAGAGCAGCAGCAGCAGCATAAGCAGCAGAAGCAGAG GAAGCAGCAGCAGCAAGCCCTTCTACCTCCCGCCAATGCTGTGCTCGTCT ACAACCAGGCTTAGGCAGACGTTTGCATTTTTTCTCCTAGCTTGTCGTTG TTCCAGGACCTTGTCATTTTTCCATCCCCCCACCCCTGGCCGCAGCACCC TGCACGCCACCTCTCCCTCTCCTCTTCTTCCCATCCCATTCCGCATCCGA ATGGATTCCTCCCTTTTCTCTACCGCCACATCCACTTCGACTGCATCAGT CTCATCCGAAAGCGAAGACGGCCAAGACCGAGAGGCCTACGAAGATGCCT TGTTCCTCTACAAACGCATGCGCGCCGACGATGACCCTCACATAAGCACC CAACTCCACACCGCCCTCGACGTCGTCGAACAAGCCCTACGACTCTACGG ACCCTCCCACGTCTTCGCTTCATACAACGGAGGGAAGGACGCCGTGGTCG TTATGCATCTCCTTCGTGTCGCCTTGGCCCATTATGTACAGGCCCACGAG CTTGACGAGCCCTCCTCATCCTCCTCCACCACTTCAACTGTCCCTCGTCC CCGCCTCGTCTACTTCGAACAGCCCTCCACGGAATTCCCAGAAGTCAAGG CCCTTGTCACACAAACCACCCAACGCTACGACCTGGACCTTAAAGTCTAC CAAAATGTCCCCTTCGCTCAAGGTCTCAAGGCCTGTATCGAATCAGAGGG TGGAGCCCCCCTGGCTTTCCTCCTTGGAACGCGCAAGGGAGATCCGAACT GCAAGGAGCAGGAGACCTTCGCACCCAGTAGTACCTGGATGCCGGCATTC ATGCGGGTCAACCCGATATTGAACTGGACATATGGGGATATCTGGCACTT TTTAAGGAAGTTTAATCTGCCTTATTGCTCGCTGTATGATCAAGGATACA CGAGCCTGGGCAAGGTGGATGACACGCTACCTAACCCGGCGTTGGCCGTG GGGAAGACGGAGGGAGGGGGGTATTACCCGGCCCATATGCTGACGGATTG GTCGTTGGAGCGGGCGGGGAGAGTGGACAAGAAGAAGGAGGCGACGGCAC GCGTAGTTGCTGCGGATGGTGGGGGGATCGGGGAAGGAGAGGAGTGCGAC GCCATCGAAGCAGCGGCAGCAGCAGTAGCGGCAGCAGCAGGAGCAGCGGG GGCGCCTACGCCCCCGCCTAAGGGTAGTCATAATGATAAGGCGGACGTCA AGACTGCAGGCCTCATAATCATCGGCGACGAGATTCTAAAGGGGAAAACC TCCGACACGAATTCCTTATACGCCGCGCGTCGTTTACGAGAACGCGGGGT TTCCGTGCAGCGCATCTCGGTACTGTCCGATGCGCATGCAGATATCGAAG CAGAAGTGCGTGTGCAAGCCGCGAAATTTGACATTGTGATAACGAGCGGC GGAGTCGGACCCACGCACGATGACATCACAATCAAGGCAGTGGCCTCGGC TTTGGGACAGGGGGTGAGCGAGAATGAGGAAATGATCGGCAAATTGCAAG AGGCCTACGGTGTGGCAACGAGGGAAGAACTGAGTGATGGGCAGCGAAAA ATGGCCCTCCTCCCCGACCATGCCCGCCTGCGGGTCCCTCCTCCTCCTCC TCCTCCTCCTCATCCACTTCCACCAGCAGGAGCATCGACAGCAGCAGTAG CAGTAGGGACGACCGGGACCAAAAAGGTCTGGCCGGTGTTGATGTGTGGG AATGTCTATGTCCTTCCGGGGGTGCCGTCGTTTTTCGAACAGAAGATGGA TACGATTGTGGATCATTTCCTCAATCATTCTCCTATCTATACTCGTAAGG TTGTTCTAGAGGTGGATGAAGTCGAAATCGTCGAGCCTTTGAATCGGGCG GTGGCAGAGTTCGAGAAACAGGGGTGCGTGTTCGGTTCTTACCCTTTTTA TGGCGAGGCGTGCCCGAGGGTGGTGATAACGTTGGAAAGCACGGATGAGG CTATGGTGGAGGCAGCGAAAGATTTCTTCTTGGGATGCATTCCGCCTGGA CATGTGCTGCATGTAGGCGAGGATGATGACCTGAGGGGACGGGAGGGGGA GGGAAATATGATGACACCGGCGGCCGTTGAGTCAGCGAATCTGACGTGA
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Coding sequence (CDS) from alignment at chr22:254187..256635+

>NO22G00780.1 ID=NO22G00780.1|Name=NO22G00780.1|organism=Nannochloropsis oceanica|type=CDS|length=2205bp|location=Sequence derived from alignment at chr22:254187..256635+ (Nannochloropsis oceanica)
ATGTTTCGTGTGCGTGTTGAGACGGAGGATATTTTGGAGGAGGAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGAGCAGCAGCAGCAGCATAAGCAGCAGAA
GCAGAGGAAGCAGCAGCAGCAAGCCCTTCTACCTCCCGCCAATGCTGTGC
TCGTCTACAACCAGGCTTAGGCAGACGTTTGCATTTTTTCTCCTAGCTTG
TCGTTGTTCCAGGACCTTGTCATTTTTCCATCCCCCCACCCCTGGCCGCA
GCACCCTGCACGCCACCTCTCCCTCTCCTCTTCTTCCCATCCCATTCCGC
ATCCGAATGGATTCCTCCCTTTTCTCTACCGCCACATCCACTTCGACTGC
ATCAGTCTCATCCGAAAGCGAAGACGGCCAAGACCGAGAGGCCTACGAAG
ATGCCTTGTTCCTCTACAAACGCATGCGCGCCGACGATGACCCTCACATA
AGCACCCAACTCCACACCGCCCTCGACGTCGTCGAACAAGCCCTACGACT
CTACGGACCCTCCCACGTCTTCGCTTCATACAACGGAGGGAAGGACGCCG
TGGTCGTTATGCATCTCCTTCGTGTCGCCTTGGCCCATTATGTACAGGCC
CACGAGCTTGACGAGCCCTCCTCATCCTCCTCCACCACTTCAACTGTCCC
TCGTCCCCGCCTCGTCTACTTCGAACAGCCCTCCACGGAATTCCCAGAAG
TCAAGGCCCTTGTCACACAAACCACCCAACGCTACGACCTGGACCTTAAA
GTCTACCAAAATGTCCCCTTCGCTCAAGGTCTCAAGGCCTGTATCGAATC
AGAGGGTGGAGCCCCCCTGGCTTTCCTCCTTGGAACGCGCAAGGGAGATC
CGAACTGCAAGGAGCAGGAGACCTTCGCACCCAGTAGTACCTGGATGCCG
GCATTCATGCGGGTCAACCCGATATTGAACTGGACATATGGGGATATCTG
GCACTTTTTAAGGAAGTTTAATCTGCCTTATTGCTCGCTGTATGATCAAG
GATACACGAGCCTGGGCAAGGTGGATGACACGCTACCTAACCCGGCGTTG
GCCGTGGGGAAGACGGAGGGAGGGGGGTATTACCCGGCCCATATGCTGAC
GGATTGGTCGTTGGAGCGGGCGGGGAGAGTGGACAAGAAGAAGGAGGCGA
CGGCACGCGTAGTTGCTGCGGATGGTGGGGGGATCGGGGAAGGAGAGGAG
TGCGACGCCATCGAAGCAGCGGCAGCAGCAGTAGCGGCAGCAGCAGGAGC
AGCGGGGGCGCCTACGCCCCCGCCTAAGGGTAGTCATAATGATAAGGCGG
ACGTCAAGACTGCAGGCCTCATAATCATCGGCGACGAGATTCTAAAGGGG
AAAACCTCCGACACGAATTCCTTATACGCCGCGCGTCGTTTACGAGAACG
CGGGGTTTCCGTGCAGCGCATCTCGGTACTGTCCGATGCGCATGCAGATA
TCGAAGCAGAAGTGCGTGTGCAAGCCGCGAAATTTGACATTGTGATAACG
AGCGGCGGAGTCGGACCCACGCACGATGACATCACAATCAAGGCAGTGGC
CTCGGCTTTGGGACAGGGGGTGAGCGAGAATGAGGAAATGATCGGCAAAT
TGCAAGAGGCCTACGGTGTGGCAACGAGGGAAGAACTGAGTGATGGGCAG
CGAAAAATGGCCCTCCTCCCCGACCATGCCCGCCTGCGGGTCCCTCCTCC
TCCTCCTCCTCCTCCTCATCCACTTCCACCAGCAGGAGCATCGACAGCAG
CAGTAGCAGTAGGGACGACCGGGACCAAAAAGGTCTGGCCGGTGTTGATG
TGTGGGAATGTCTATGTCCTTCCGGGGGTGCCGTCGTTTTTCGAACAGAA
GATGGATACGATTGTGGATCATTTCCTCAATCATTCTCCTATCTATACTC
GTAAGGTTGTTCTAGAGGTGGATGAAGTCGAAATCGTCGAGCCTTTGAAT
CGGGCGGTGGCAGAGTTCGAGAAACAGGGGTGCGTGTTCGGTTCTTACCC
TTTTTATGGCGAGGCGTGCCCGAGGGTGGTGATAACGTTGGAAAGCACGG
ATGAGGCTATGGTGGAGGCAGCGAAAGATTTCTTCTTGGGATGCATTCCG
CCTGGACATGTGCTGCATGTAGGCGAGGATGATGACCTGAGGGGACGGGA
GGGGGAGGGAAATATGATGACACCGGCGGCCGTTGAGTCAGCGAATCTGA
CGTGA
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Synonyms
Publications