NO22G00770.1, NO22G00770.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO22G00770.1
Unique Name	NO22G00770.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1212
Alignment location	chr22:252137..254089 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr22	genome	chr22:252137..254089 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO22G00770.1 vs.
Match: EWM21414.1 (ras-related gtp binding c [Nannochloropsis gaditana])

HSP 1 Score: 531.9 bits (1369), Expect = 1.700e-147
Identity = 279/379 (73.61%), Postives = 311/379 (82.06%), Query Frame = 0

Query:    1 MAMEYSDEQQMLTDLPKPRIILMGPRRSGKTSIERVVFQKMSPHETLFLESTHSLDVKLINNNPFVQFQIWDFPGDFSFTSASSS-------------SSNEEGEMDEGGVEGRAVE---VFGSCAALVYVLDAQDEPYQEALSRLVEVVMRAHSINSSVCVTVFIHKVDGDLFLSDEHKIDCQRDVQQRIAHELADAGLEQIEMSYFLTSIYDHSIFEAFSKVVQRLTPQLPALENLLNYLISACKMEKSFLFDVVSKLYVATDSNPVDMQSYELCADMIDVVLDVSCIYGVSYDAEGGTETSPYDSDSSSTIHLSNGMVLYLREVDDYLALVGLLRQENFQKKGLIDFNIDCLKTSLQRLVVVDDGSIGGAGGGGEG 364
            MA+EY+DEQQMLTDL KPRI+LMGPRRSGKTSI RVVFQKM PHETLFLESTH++D++L NNNPF+QFQIWDFPGDF F   S +             S  +EGE  EG  EG  ++   VFG  AALV+VLDAQDEPY EAL+RLV++V R  S+N S+ V VFIHKVDGDLFLSDEHK+DCQRDVQ RIA EL DA LE +E+S FLTSIYDHSIFEAFSK+VQRLT QLP +ENLLNYLISACKMEKSFLFDVVS+LY+ATDSNPVDMQ+YE+C DMIDVV+DVSCIYGV YDAEG  +   YDSDSSSTIHLSNGMVLYLREVDDYLA VGL+R ENFQKKGLIDFNIDCLK SL RL      S GG+GGGG+G
Sbjct:    1 MALEYTDEQQMLTDLTKPRILLMGPRRSGKTSILRVVFQKMPPHETLFLESTHAVDIRLANNNPFLQFQIWDFPGDFFFYRVSRNGGEGGGGGRELGGSMTQEGE-GEGPKEGELLDEVGVFGVPAALVFVLDAQDEPYHEALTRLVDLVARGQSVNPSLHVVVFIHKVDGDLFLSDEHKVDCQRDVQHRIAQELRDASLEHVEVSCFLTSIYDHSIFEAFSKIVQRLTHQLPVMENLLNYLISACKMEKSFLFDVVSRLYLATDSNPVDMQTYEMCVDMIDVVVDVSCIYGVKYDAEGEAQGPVYDSDSSSTIHLSNGMVLYLREVDDYLAFVGLMRAENFQKKGLIDFNIDCLKRSLGRL-----SSEGGSGGGGKG 373

The following BLAST results are available for this feature:

BLAST of NO22G00770.1 vs.

BLAST of NO22G00770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM21414.1	1.700e-147	73.61	ras-related gtp binding c [Nannochloropsis gaditan...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO22G00770	NO22G00770	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO22G00770.1	NO22G00770.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO22G00770.1.cds1	NO22G00770.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00770.1.cds2	NO22G00770.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00770.1.cds3	NO22G00770.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00770.1.cds4	NO22G00770.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr22:252137..254089-
coding sequence from alignment at chr22:252137..254089-

mRNA sequence

>NO22G00770.1 ID=NO22G00770.1|Name=NO22G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp
ATGGCAATGGAGTACTCCGACGAGCAGCAAATGTTGACCGATCTTCCAAA
ACCCCGCATCATCCTCATGGGGCCCCGTCGCAGCGGTAAGACCAGCATCG
AGCGAGTGGTCTTCCAAAAAATGAGCCCTCACGAGACCCTCTTCTTAGAG
AGCACCCACAGCCTAGACGTGAAGCTGATAAATAATAATCCTTTCGTCCA
GTTTCAGATATGGGACTTTCCCGGTGATTTCTCTTTTACATCCGCTTCCT
CCTCCTCTTCTAACGAGGAAGGAGAAATGGATGAGGGAGGGGTGGAAGGA
AGGGCGGTCGAGGTGTTTGGGTCGTGTGCTGCGCTTGTCTATGTTTTGGA
CGCCCAGGACGAGCCGTATCAGGAGGCGCTATCGAGGCTGGTGGAGGTAG
TGATGAGGGCGCACAGTATTAACAGCTCGGTGTGTGTCACGGTGTTTATT
CACAAGGTCGACGGGGACTTGTTCCTGTCGGATGAGCATAAAATCGACTG
TCAACGAGACGTTCAGCAGCGGATCGCACACGAGTTGGCCGACGCCGGCT
TGGAGCAGATAGAGATGTCCTACTTCTTGACCTCTATATACGATCATTCG
ATCTTCGAAGCCTTCTCGAAGGTCGTCCAACGGTTGACCCCGCAACTGCC
GGCGTTAGAGAATCTGTTGAATTATTTGATCAGTGCATGTAAGATGGAGA
AGAGTTTTTTGTTCGACGTCGTGAGCAAGTTGTATGTGGCGACGGATTCG
AACCCAGTGGACATGCAGAGCTATGAGCTGTGCGCGGACATGATCGACGT
GGTGTTGGACGTCTCGTGTATTTATGGGGTAAGCTACGATGCTGAAGGAG
GAACAGAGACTTCTCCTTATGACTCTGATTCTTCCTCCACTATTCATCTA
AGCAACGGCATGGTCCTTTATTTGAGGGAGGTGGACGACTATCTCGCTCT
TGTCGGTCTCCTGCGCCAAGAGAACTTCCAGAAAAAGGGTCTTATTGACT
TTAACATCGATTGTCTTAAAACCTCTCTGCAAAGGCTCGTAGTTGTTGAT
GATGGGAGTATAGGAGGAGCAGGTGGGGGAGGAGAGGGAGGGAAAGGAGG
AAAGGAGGGGGCGTTGACATGCAACAATTCACCGTTTTCGAATAGTGATG
ATCGAGGTAAAGGGAGAGGATGGAGCTCTCATGAAGGCGCGTCGGTAGAC
TCGAGGAGGTGA

protein sequence of NO22G00770.1

>NO22G00770.1-protein ID=NO22G00770.1-protein|Name=NO22G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=404bp
MAMEYSDEQQMLTDLPKPRIILMGPRRSGKTSIERVVFQKMSPHETLFLE
STHSLDVKLINNNPFVQFQIWDFPGDFSFTSASSSSSNEEGEMDEGGVEG
RAVEVFGSCAALVYVLDAQDEPYQEALSRLVEVVMRAHSINSSVCVTVFI
HKVDGDLFLSDEHKIDCQRDVQQRIAHELADAGLEQIEMSYFLTSIYDHS
IFEAFSKVVQRLTPQLPALENLLNYLISACKMEKSFLFDVVSKLYVATDS
NPVDMQSYELCADMIDVVLDVSCIYGVSYDAEGGTETSPYDSDSSSTIHL
SNGMVLYLREVDDYLALVGLLRQENFQKKGLIDFNIDCLKTSLQRLVVVD
DGSIGGAGGGGEGGKGGKEGALTCNNSPFSNSDDRGKGRGWSSHEGASVD
SRR*

mRNA from alignment at chr22:252137..254089-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO22G00770.1 ID=NO22G00770.1|Name=NO22G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1953bp|location=Sequence derived from alignment at chr22:252137..254089- (Nannochloropsis oceanica)
ATGGCAATGGAGTACTCCGACGAGCAGCAAATGGTACGTGCGCCCTCTGT
CCCTCCCTCACTTCTACCCTCCCTCATTTCTTCCTGACAGTCAACATGCC
TGCCGTCTCCACTCATTCATTCAATAGTGATACGGCTCTTATATGTGTGT
GAGTCGGTTGGCGGTGGTAATAGTGCCTGGGGTGTTAAGGCGGATAGAGT
TAGCGCCCTAACCCAGCCTTCCTTGTCTCCCTCCGTCCCCTCCTCAGTCC
CTCCCTCTCATGTCCTACCATCTATTGTCTCCATTTTTAACAGTTGACCG
ATCTTCCAAAACCCCGCATCATCCTCATGGGGCCCCGTCGCAGCGGTAAG
ACCAGCATCGAGCGAGTGGTCTTCCAAAAAATGAGCCCTCACGAGACCCT
CTTCTTAGAGAGCACCCACAGCCTAGACGTGAAGCTGATAAATAATAATC
CTTTCGTCCAGTTTCAGATATGGGACTTTCCCGGTGATTTCTCTTTTACA
TCCGCTTCCTCCTCCTCTTCTAACGAGGAAGGAGAAATGGATGAGGGAGG
GGTGGAAGGAAGGGCGGTCGAGGTGTTTGGGTCGTGTGCTGCGCTTGTCT
ATGTTTTGGACGCCCAGGACGAGCCGTATCAGGAGGCGCTATCGAGGCTG
GTGGAGGTAGTGATGAGGGCGCACAGTATTAACAGCTCGGTGTGTGTCAC
GGTGTTTATTCACAAGGTCGACGGGGACTTGTTCCTGTCGGATGAGCATA
AAATCGACTGTCAACGAGACGTTCAGCAGCGGATCGCACACGAGTTGGCC
GACGCCGGCTTGGAGCAGATAGAGATGTCCTACTTCTTGACCTCTATATA
CGATCATTCGATCTTCGAAGCCTTCTCGAAGGTCGTCCAACGGTTGACCC
CGCAACTGCCGGCGTTAGAGAATCTGTTGAATTATTTGATCAGTGCATGT
AAGATGGAGAAGAGTTTTTTGTTCGACGTCGTGAGCAAGTTGTATGTGGC
GACGGATTCGAACCCAGTGGACATGCAGAGCTATGAGCTGTGCGCGGACA
TGATCGACGTGGTGTTGGACGTCTCGTGTATTTATGGGTGAGGAGGGAGG
AAGGGAGGGAGGGATAGGGGGCCCTGTCGTGGTGCCGTGAAAATTGTCTC
CGCGGGTTATTTTCTCTCTTTTGCTTATCCTCTTTGGTTTACTAGATAGG
CATACCTTACAGCCTTTTCGCTTCCGGCTTCCTGTCATATCACTCAGTAA
CCTCCCTACCCTCCCTCCTTCTCTCCCTCCCTCCCTTAGGGTAAGCTACG
ATGCTGAAGGAGGAACAGAGACTTCTCCTTATGACTCTGATTCTTCCTCC
ACTATTCATCTAAGCAACGGCATGGTCCTTTATTTGAGGGAGGTGGACGA
GTAAGTGGGCAGCGAGGGAGGGAGGGTGGGAGGGAGGAAACTCTTTCTCG
AAGACGGACTGGGGCATGCAGGTCCGTGTTCGCACACGTCTCACCCCACC
CCTTGCTTCCACGCAGCAATCTACCTCTTGTCAATTTCTGCGTGAGAACA
AGTTAAAAAAGACAAGAAGGTCTGATCGGTCTAAGCATCAACTGCCTCAA
GACCTCGTGCTCATTCCACACCTCACTCTGCTCTCCTCCTCCCCCTTTCT
CCTTTCCCCTTTTGGTGACGAGTGAACAGCTATCTCGCTCTTGTCGGTCT
CCTGCGCCAAGAGAACTTCCAGAAAAAGGGTCTTATTGACTTTAACATCG
ATTGTCTTAAAACCTCTCTGCAAAGGCTCGTAGTTGTTGATGATGGGAGT
ATAGGAGGAGCAGGTGGGGGAGGAGAGGGAGGGAAAGGAGGAAAGGAGGG
GGCGTTGACATGCAACAATTCACCGTTTTCGAATAGTGATGATCGAGGTA
AAGGGAGAGGATGGAGCTCTCATGAAGGCGCGTCGGTAGACTCGAGGAGG
TGA

Coding sequence (CDS) from alignment at chr22:252137..254089-

>NO22G00770.1 ID=NO22G00770.1|Name=NO22G00770.1|organism=Nannochloropsis oceanica|type=CDS|length=1212bp|location=Sequence derived from alignment at chr22:252137..254089- (Nannochloropsis oceanica)
ATGGCAATGGAGTACTCCGACGAGCAGCAAATGTTGACCGATCTTCCAAA
ACCCCGCATCATCCTCATGGGGCCCCGTCGCAGCGGTAAGACCAGCATCG
AGCGAGTGGTCTTCCAAAAAATGAGCCCTCACGAGACCCTCTTCTTAGAG
AGCACCCACAGCCTAGACGTGAAGCTGATAAATAATAATCCTTTCGTCCA
GTTTCAGATATGGGACTTTCCCGGTGATTTCTCTTTTACATCCGCTTCCT
CCTCCTCTTCTAACGAGGAAGGAGAAATGGATGAGGGAGGGGTGGAAGGA
AGGGCGGTCGAGGTGTTTGGGTCGTGTGCTGCGCTTGTCTATGTTTTGGA
CGCCCAGGACGAGCCGTATCAGGAGGCGCTATCGAGGCTGGTGGAGGTAG
TGATGAGGGCGCACAGTATTAACAGCTCGGTGTGTGTCACGGTGTTTATT
CACAAGGTCGACGGGGACTTGTTCCTGTCGGATGAGCATAAAATCGACTG
TCAACGAGACGTTCAGCAGCGGATCGCACACGAGTTGGCCGACGCCGGCT
TGGAGCAGATAGAGATGTCCTACTTCTTGACCTCTATATACGATCATTCG
ATCTTCGAAGCCTTCTCGAAGGTCGTCCAACGGTTGACCCCGCAACTGCC
GGCGTTAGAGAATCTGTTGAATTATTTGATCAGTGCATGTAAGATGGAGA
AGAGTTTTTTGTTCGACGTCGTGAGCAAGTTGTATGTGGCGACGGATTCG
AACCCAGTGGACATGCAGAGCTATGAGCTGTGCGCGGACATGATCGACGT
GGTGTTGGACGTCTCGTGTATTTATGGGGTAAGCTACGATGCTGAAGGAG
GAACAGAGACTTCTCCTTATGACTCTGATTCTTCCTCCACTATTCATCTA
AGCAACGGCATGGTCCTTTATTTGAGGGAGGTGGACGACTATCTCGCTCT
TGTCGGTCTCCTGCGCCAAGAGAACTTCCAGAAAAAGGGTCTTATTGACT
TTAACATCGATTGTCTTAAAACCTCTCTGCAAAGGCTCGTAGTTGTTGAT
GATGGGAGTATAGGAGGAGCAGGTGGGGGAGGAGAGGGAGGGAAAGGAGG
AAAGGAGGGGGCGTTGACATGCAACAATTCACCGTTTTCGAATAGTGATG
ATCGAGGTAAAGGGAGAGGATGGAGCTCTCATGAAGGCGCGTCGGTAGAC
TCGAGGAGGTGA

Synonyms

Publications