NO22G00700.1, NO22G00700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00700.1
Unique NameNO22G00700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1486
Alignment locationchr22:235360..237512 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:235360..237512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00700.1 vs.
Match: XP_005855292.1 (nuclear protein localization 4-like protein [Nannochloropsis gaditana CCMP526]; EKU21070.1 nuclear protein localization 4-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 755.4 bits (1949), Expect = 1.000e-214
Identity = 367/448 (81.92%), Postives = 399/448 (89.06%), Query Frame = 0 
Query:    1 MLLRVRSKVGTWRVEGVGPELTVAALRNRVLAEHGVTPHPSQIFSLDPAGKRVMEDGQTVAMLGLKHGDLVHLAIREEDCAHEAGKKIAADGSIVNKTHLEASRERGFRPGMMSLRSMKMHWTLTDFVELDAQFEYKIKAQKNENPWCTKAIMEPACGNDFQSYMRRLGFNQCRVGYLYGTFTDAKEAKVEVLYEPPQEGTHESFELLEDPRAEKVDALVAALGLTKVGWIFAHPPREEGFIFSGLEVMLAAMGQLEAADGVKETPFVTVRVSLAPAEKVEGEEGKEGG-PTAPSVAHFDAFQVSLQCMEMVAEGAVEPGEEPGSMHVNESFTAIVEGRAAKTVDNNFFLVNVPVGSEESKLFLSQYPKWNRLDELPDAKTMAAQLSQAGKAGWRFVDLLGDFHLLLFLAEFLDMSEMEVVCASVRDKESVPLGEGHVALIRAIAGMD 448
            MLLRVRSK+GTWRVEGV P  T+ ALR+R+L+EHGV+PHPSQIFSLDPAGKRVM+D QTV    L+HGDLVHLAIREEDCAHEAGKKIAADGSIVNKTHLEASR +GFRPGMMSLRSMKMHWTLTDFVELDAQFEYKIKAQKNE PWCTKAIMEP CGNDFQSYMRR+GFNQCR+GYLYG FT+AKEAKVEVLYEPPQE THE FELLEDPRAEKV+AL AALGL +VGWIFAHPPREEGF+FSGLEVM AAMGQLEAADGVKETPFVTVRVSLAP EK  GE+GKEGG     +VAHFDAFQVSLQCMEMVAEGA+EPG EPG+M VNESFTAIVEG+ A TVD NFFLVNVPVGS ES L   ++PK NRLDELP A  MAAQL +AGKAGWRF+DL+ DFHLLLFL +FL M E+ V+C SVR+KE+VPLG GHV L+RAIAGM+
Sbjct:    1 MLLRVRSKMGTWRVEGVEPGTTIKALRSRILSEHGVSPHPSQIFSLDPAGKRVMDDEQTVKSFNLQHGDLVHLAIREEDCAHEAGKKIAADGSIVNKTHLEASRVKGFRPGMMSLRSMKMHWTLTDFVELDAQFEYKIKAQKNETPWCTKAIMEPICGNDFQSYMRRVGFNQCRMGYLYGQFTEAKEAKVEVLYEPPQESTHEGFELLEDPRAEKVEALAAALGLVRVGWIFAHPPREEGFVFSGLEVMQAAMGQLEAADGVKETPFVTVRVSLAPVEKAGGEDGKEGGKEEVATVAHFDAFQVSLQCMEMVAEGAIEPGPEPGAMLVNESFTAIVEGKPAPTVDVNFFLVNVPVGSAESSLLTHRFPKANRLDELPSAAAMAAQLGEAGKAGWRFIDLMSDFHLLLFLTDFLGMEEVAVLCRSVREKETVPLGAGHVDLLRAIAGME 448
The following BLAST results are available for this feature:
BLAST of NO22G00700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855292.11.000e-21481.92nuclear protein localization 4-like protein [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00700NO22G00700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00700.1NO22G00700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00700.1.cds1NO22G00700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00700.1.cds2NO22G00700.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00700.1.cds3NO22G00700.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00700.1 ID=NO22G00700.1|Name=NO22G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1486bp
ACAGACAATTACAAGAATCAGGAGCAGGGCCACACAAACACAGAGAGCAG
CATGCTTCTGCGCGTGCGCAGTAAGGTGGGCACCTGGCGTGTGGAAGGCG
TCGGGCCCGAATTGACAGTTGCCGCGTTGAGAAACCGTGTCCTGGCAGAG
CATGGTGTGACTCCTCACCCTTCTCAGATCTTCAGTCTTGACCCGGCGGG
GAAGCGGGTGATGGAGGATGGGCAGACGGTGGCAATGTTGGGCTTAAAGC
ATGGGGATTTGGTGCATTTGGCGATTCGGGAAGAGGATTGTGCGCACGAG
GCTGGAAAAAAAATCGCTGCTGATGGGAGTATTGTGAACAAGACACATTT
GGAGGCGTCCCGTGAGAGGGGATTTCGGCCAGGGATGATGTCTTTAAGGA
GCATGAAGATGCACTGGACATTGACGGATTTCGTGGAGCTGGACGCGCAA
TTTGAGTATAAGATCAAGGCGCAGAAGAACGAGAATCCCTGGTGCACCAA
GGCCATTATGGAGCCAGCGTGCGGGAATGACTTCCAGTCCTACATGCGCC
GCTTGGGGTTCAACCAGTGCCGTGTAGGCTACCTCTACGGCACATTTACG
GATGCGAAGGAGGCCAAGGTTGAGGTACTGTACGAGCCGCCGCAAGAAGG
CACACATGAAAGCTTCGAGCTTCTGGAGGACCCGCGTGCCGAGAAGGTCG
ACGCGCTGGTCGCCGCATTGGGCCTGACTAAGGTCGGGTGGATTTTCGCC
CATCCCCCGCGCGAAGAAGGCTTTATATTTTCCGGTTTGGAAGTCATGCT
GGCCGCGATGGGTCAGCTTGAGGCCGCCGATGGGGTGAAAGAAACGCCTT
TTGTCACTGTGCGAGTCTCGTTGGCGCCGGCGGAGAAGGTGGAGGGGGAG
GAAGGGAAGGAAGGAGGGCCGACGGCGCCATCGGTTGCGCATTTCGATGC
CTTCCAAGTGAGTTTGCAGTGTATGGAGATGGTGGCAGAAGGTGCGGTGG
AACCCGGGGAGGAGCCAGGCTCCATGCACGTGAACGAGTCCTTCACCGCG
ATTGTGGAGGGTCGTGCTGCCAAGACAGTGGACAACAACTTCTTTTTGGT
GAATGTCCCCGTAGGGAGCGAAGAGAGCAAGTTGTTTTTATCCCAATACC
CCAAGTGGAACCGACTGGATGAGCTCCCGGACGCCAAGACTATGGCTGCA
CAATTATCACAAGCGGGTAAGGCCGGATGGCGGTTTGTGGACTTGTTGGG
CGATTTCCATTTGTTGTTGTTTCTGGCGGAGTTCTTGGATATGAGCGAGA
TGGAGGTGGTGTGTGCGAGTGTGCGGGATAAAGAGAGTGTGCCGTTGGGA
GAAGGTCACGTGGCGCTGATCCGGGCGATTGCAGGGATGGATTGAATGTG
AGGGATAGGGAGAAAAGAGGGAGAGGAGGCAGAGATCAAAGAAGGAAAGA
AGACGAATGAGAATGGAGCGGTGCTTGATTCATATG
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protein sequence of NO22G00700.1

>NO22G00700.1-protein ID=NO22G00700.1-protein|Name=NO22G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MLLRVRSKVGTWRVEGVGPELTVAALRNRVLAEHGVTPHPSQIFSLDPAG
KRVMEDGQTVAMLGLKHGDLVHLAIREEDCAHEAGKKIAADGSIVNKTHL
EASRERGFRPGMMSLRSMKMHWTLTDFVELDAQFEYKIKAQKNENPWCTK
AIMEPACGNDFQSYMRRLGFNQCRVGYLYGTFTDAKEAKVEVLYEPPQEG
THESFELLEDPRAEKVDALVAALGLTKVGWIFAHPPREEGFIFSGLEVML
AAMGQLEAADGVKETPFVTVRVSLAPAEKVEGEEGKEGGPTAPSVAHFDA
FQVSLQCMEMVAEGAVEPGEEPGSMHVNESFTAIVEGRAAKTVDNNFFLV
NVPVGSEESKLFLSQYPKWNRLDELPDAKTMAAQLSQAGKAGWRFVDLLG
DFHLLLFLAEFLDMSEMEVVCASVRDKESVPLGEGHVALIRAIAGMD*
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mRNA from alignment at chr22:235360..237512-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00700.1 ID=NO22G00700.1|Name=NO22G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2153bp|location=Sequence derived from alignment at chr22:235360..237512- (Nannochloropsis oceanica)
ACAGACAATTACAAGAATCAGGAGCAGGGCCACACAAACACAGAGAGCAG
CATGCTTCTGCGCGTGCGCAGTAAGGTGGGCACCTGGCGTGTGGAAGGCG
TCGGGCCCGAATTGACAGTTGCCGCGTTGAGAAACCGTGTCCTGGCAGAG
CATGGTGTGACTCCTCACCCTTCTCAGATCTTCAGTCTTGACCCGGCGGG
GAAGCGGGTGATGGAGGATGGGCAGACGGTGGCAATGTTGGGCTTAAAGC
ATGGGGATTTGGTGCATTTGGCGATTCGGGAAGAGGATTGTGCGCACGAG
GCTGGAAAAAAAATCGCTGCTGATGGGAGTATTGTGAACAAGACACATTT
GGAGGCGTCCCGTGAGAGGGGATTTCGGCCAGGGATGATGTCTTTAAGGA
GCATGAAGATGCACTGGACATTGACGGATTTCGTGGAGCTGGACGCGCAA
TTTGAGTATAAGATCAAGGCGCAGAAGAACGAGAATCCCTGGTGCACCAA
GGCCATTATGGAGCCAGCGTGCGGGAATGACTTCCAGGTGCGAAGGGAGA
GTGGGAGGGAGGGGCTAGAAAGGGTGATGGAGAGTTGTTTTTTGTGAGGA
GGGGGTGTGAGTATTGTGGTTAATGGCAATTGTGGAGCGGAGCGTGCAGT
TTGACTGAGGTTGCATTTTGTGTCCCCCACCCTTCCTCCCTCCCCTTACT
AACCCTGGTCGACGAAGACAACGTCTCAGAACGAATCTTGGGTAGCTTTT
CCTTCTCCTCTTCTTCCTTTCTCACCTGTCCTCGTTCTAGCTCGACCTCT
ATCATTCAGCTTCCTCCCTTCAGGTCATCCTCTTTCTCTCGTCCTTCCTT
TCCCTCCATCCCTCCCTCCCTAGTCCTACATGCGCCGCTTGGGGTTCAAC
CAGTGCCGTGTAGGCTACCTCTACGGCACATTTACGGATGCGAAGGAGGC
CAAGGTTGAGGTACTGTACGAGCCGCCGCAAGAAGGTGAGGAAGGGAGAT
AGATATGTTGACGCATGCGATGAATTCACAAAAGAAACTAAAGAGGTCTC
ATGTGCTTAGAAAAGTACGTGCATGTGGTCTGATCGATTGAAATGGGTGT
AGTTATTGGGCCTCATTAAGGTAAAGGGGAGCAAAGCATGCAAAGCATGT
TGAGGTGTGGCGGCTTCTTCAACGCTGCCATTGACAAGTCCCCGGTCACA
TGCAGCATACTCACCGGCACACACCCACACCTCACCCATAACTATATCTA
CACGCCCGTACGACAAACACACCCACACATATCTCCGCACATGAACACAA
ACACACACATATATAGGCACACATGAAAGCTTCGAGCTTCTGGAGGACCC
GCGTGCCGAGAAGGTCGACGCGCTGGTCGCCGCATTGGGCCTGACTAAGG
TCGGGTGGATTTTCGCCCATCCCCCGCGCGAAGAAGGCTTTATATTTTCC
GGTTTGGAAGTCATGCTGGCCGCGATGGGTCAGCTTGAGGCCGCCGATGG
GGTGAAAGAAACGCCTTTTGTCACTGTGCGAGTCTCGTTGGCGCCGGCGG
AGAAGGTGGAGGGGGAGGAAGGGAAGGAAGGAGGGCCGACGGCGCCATCG
GTTGCGCATTTCGATGCCTTCCAAGTGAGTTTGCAGTGTATGGAGATGGT
GGCAGAAGGTGCGGTGGAACCCGGGGAGGAGCCAGGCTCCATGCACGTGA
ACGAGTCCTTCACCGCGATTGTGGAGGGTCGTGCTGCCAAGACAGTGGAC
AACAACTTCTTTTTGGTGAATGTCCCCGTAGGGAGCGAAGAGAGCAAGTT
GTTTTTATCCCAATACCCCAAGTGGAACCGACTGGATGAGCTCCCGGACG
CCAAGACTATGGCTGCACAATTATCACAAGCGGGTAAGGCCGGATGGCGG
TTTGTGGACTTGTTGGGCGATTTCCATTTGTTGTTGTTTCTGGCGGAGTT
CTTGGATATGAGCGAGATGGAGGTGGTGTGTGCGAGTGTGCGGGATAAAG
AGAGTGTGCCGTTGGGAGAAGGTCACGTGGCGCTGATCCGGGCGATTGCA
GGGATGGATTGAATGTGAGGGATAGGGAGAAAAGAGGGAGAGGAGGCAGA
GATCAAAGAAGGAAAGAAGACGAATGAGAATGGAGCGGTGCTTGATTCAT
ATG
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Coding sequence (CDS) from alignment at chr22:235360..237512-

>NO22G00700.1 ID=NO22G00700.1|Name=NO22G00700.1|organism=Nannochloropsis oceanica|type=CDS|length=1344bp|location=Sequence derived from alignment at chr22:235360..237512- (Nannochloropsis oceanica)
ATGCTTCTGCGCGTGCGCAGTAAGGTGGGCACCTGGCGTGTGGAAGGCGT
CGGGCCCGAATTGACAGTTGCCGCGTTGAGAAACCGTGTCCTGGCAGAGC
ATGGTGTGACTCCTCACCCTTCTCAGATCTTCAGTCTTGACCCGGCGGGG
AAGCGGGTGATGGAGGATGGGCAGACGGTGGCAATGTTGGGCTTAAAGCA
TGGGGATTTGGTGCATTTGGCGATTCGGGAAGAGGATTGTGCGCACGAGG
CTGGAAAAAAAATCGCTGCTGATGGGAGTATTGTGAACAAGACACATTTG
GAGGCGTCCCGTGAGAGGGGATTTCGGCCAGGGATGATGTCTTTAAGGAG
CATGAAGATGCACTGGACATTGACGGATTTCGTGGAGCTGGACGCGCAAT
TTGAGTATAAGATCAAGGCGCAGAAGAACGAGAATCCCTGGTGCACCAAG
GCCATTATGGAGCCAGCGTGCGGGAATGACTTCCAGTCCTACATGCGCCG
CTTGGGGTTCAACCAGTGCCGTGTAGGCTACCTCTACGGCACATTTACGG
ATGCGAAGGAGGCCAAGGTTGAGGTACTGTACGAGCCGCCGCAAGAAGGC
ACACATGAAAGCTTCGAGCTTCTGGAGGACCCGCGTGCCGAGAAGGTCGA
CGCGCTGGTCGCCGCATTGGGCCTGACTAAGGTCGGGTGGATTTTCGCCC
ATCCCCCGCGCGAAGAAGGCTTTATATTTTCCGGTTTGGAAGTCATGCTG
GCCGCGATGGGTCAGCTTGAGGCCGCCGATGGGGTGAAAGAAACGCCTTT
TGTCACTGTGCGAGTCTCGTTGGCGCCGGCGGAGAAGGTGGAGGGGGAGG
AAGGGAAGGAAGGAGGGCCGACGGCGCCATCGGTTGCGCATTTCGATGCC
TTCCAAGTGAGTTTGCAGTGTATGGAGATGGTGGCAGAAGGTGCGGTGGA
ACCCGGGGAGGAGCCAGGCTCCATGCACGTGAACGAGTCCTTCACCGCGA
TTGTGGAGGGTCGTGCTGCCAAGACAGTGGACAACAACTTCTTTTTGGTG
AATGTCCCCGTAGGGAGCGAAGAGAGCAAGTTGTTTTTATCCCAATACCC
CAAGTGGAACCGACTGGATGAGCTCCCGGACGCCAAGACTATGGCTGCAC
AATTATCACAAGCGGGTAAGGCCGGATGGCGGTTTGTGGACTTGTTGGGC
GATTTCCATTTGTTGTTGTTTCTGGCGGAGTTCTTGGATATGAGCGAGAT
GGAGGTGGTGTGTGCGAGTGTGCGGGATAAAGAGAGTGTGCCGTTGGGAG
AAGGTCACGTGGCGCTGATCCGGGCGATTGCAGGGATGGATTGA
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Synonyms
Publications