NO22G00580.1, NO22G00580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00580.1
Unique NameNO22G00580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1969
Alignment locationchr22:197223..199191 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:197223..199191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00580.1 vs.
Match: GAQ83819.1 (hypothetical protein KFL_001630160 [Klebsormidium nitens])

HSP 1 Score: 166.0 bits (419), Expect = 3.000e-37
Identity = 137/510 (26.86%), Postives = 214/510 (41.96%), Query Frame = 0 
Query:   17 KGRCLVASRALHSGTDVLACYADAWALFEKQRGSRCAYCLRMPECEKALLVCNTCEAFAYCSRHCQEQDLSEHESECASIAHLDR----VPPPTMLMTARLVRRVGVEALTRQDPDKRSLFRALQQLVHHTDKASPVRLKQFLFAANQICGLLVLPPAPADMATIVAKLGG---------PRFVARLLAQIGCNAFTITDGDAEVLGVGLFLGAVSANHSCDPNCHQIFEGPYIRLRALRPIAPGEELTIGYIDISNTRKLRQEALLEGYGFECTCSRCSSLEEQWRETQVVGWACPRRGCLGACVEEPQGAALFRAWRATRD--GIVECNESRARVCTACGARLEVNEVHKRQADLEKAEHHRQEFDRLLAHRGSQKADALRDALKEADKICDVYARCLIPHISLCRYEFMTRLVEECIQLQEFGLMIKYGVLSSAGLEAISPRHSPASAYLYANLGKALLYIHEPAQALTYLCKAMQKLEASHGQDHHYMREVERLLMDAQHTTGRKK 512
            +GRCLVA R    G  +L     A  L E  +G+RC  C  +    + L  C  C+   YC + CQ      H+ EC +I+ L R    VP PT+ +  R++    ++A   +  +    +  ++ LV H +      L  +                 A MAT+V  +G          PR V  LL +  CNA TI D + + +G+GLF+    ANH C+PN   +++GP   +RALRPI  G+E+T  YID++ +R  R+E L + Y FEC C RC    E   +++V G  C    C G+   +      +   +A RD  G   C   RA       AR E      R+ +  + +   QE  RLL      +   L     E  +  D                    L+  C+ LQ++     +   +    EA  P+ S         L K   ++ +       + +A + L  +HG+ H  + E + LL  AQ   G+++
Sbjct:   26 RGRCLVAGRTFLPGELILTQAPYAHVLDEANQGNRCDACFVVGG--EGLRRCGGCKLVMYCDQKCQRSTWPLHQHECRAISALRRLHGTVPTPTLRLAFRVMAMRTLQATGVRPRNAVDDYARVEALVSHLEDTPRDTLLLY-----------------AQMATLVKAMGDVEGSKVAVDPREVTELLGRFACNAHTICDEELKPVGMGLFVVNSLANHDCNPNAIILYDGPRAMMRALRPITAGDEITHAYIDLAGSRNQRRERLRK-YYFECQCDRCVHHREDPVDSKVAGLKCADESCGGSPGWD------WELGKAARDKTGRYVCKCGRAVPANEADARKEEANRILREEEASEGKGEFQEARRLLEKAHGLQTSVLHRLNWELVRTSDA-------------------LLRVCMALQDWPAAASWCERTLPAYEACLPQPSALYGLQLFTLAKLKWFLEDAQSCFEAVRRACEILTITHGEKHRLVLEAKDLLSQAQAEAGQRR 490
The following BLAST results are available for this feature:
BLAST of NO22G00580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
GAQ83819.13.000e-3726.86hypothetical protein KFL_001630160 [Klebsormidium ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00580NO22G00580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00580.1NO22G00580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00580.1.cds1NO22G00580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00580.1 ID=NO22G00580.1|Name=NO22G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1969bp
CTCGCATCCCACACACTCCATGTCTACATACTGTACACAGGAACACCGAC
GACGCCTGCACTGCGATTGAGTCCAGTCATCGCGGAAGAAACGAGGAAGG
AACGCGGCAACGGGCAGCGACGAGCACTCATCATGGCCCCTTCCCCACCG
CCGGCCTGGCGAGTAATTCACACAGGGAGCAAAGGGCGATGCCTCGTCGC
CTCTCGTGCCTTGCATTCTGGTACCGATGTGCTTGCCTGCTATGCAGACG
CCTGGGCTTTGTTTGAAAAGCAACGCGGCTCTCGGTGTGCCTACTGCTTA
CGAATGCCCGAGTGCGAGAAGGCCCTGCTTGTGTGCAACACCTGTGAGGC
CTTTGCCTACTGTTCCCGCCACTGCCAAGAACAAGACTTATCAGAACACG
AGTCTGAATGTGCTAGCATTGCCCATCTGGACAGGGTTCCACCCCCTACA
ATGCTCATGACAGCGCGGCTGGTCCGCCGTGTGGGCGTCGAAGCCCTCAC
ACGTCAAGACCCCGACAAGCGCTCCCTCTTCAGAGCCCTCCAGCAGCTCG
TCCACCACACAGACAAGGCCTCGCCCGTCCGTCTAAAGCAATTTTTGTTT
GCCGCTAATCAGATCTGTGGACTATTGGTTCTCCCTCCCGCCCCCGCAGA
CATGGCCACTATCGTCGCGAAGCTAGGTGGGCCTCGCTTTGTGGCCCGTT
TACTCGCTCAAATTGGGTGCAACGCATTCACCATCACCGACGGGGACGCT
GAAGTCCTGGGTGTCGGTCTCTTTCTTGGTGCGGTGTCCGCAAACCACTC
TTGTGACCCCAATTGCCATCAGATATTCGAGGGTCCCTACATCCGACTAA
GGGCCTTGCGCCCCATTGCGCCTGGGGAGGAATTGACGATTGGCTACATT
GACATCAGCAACACTCGTAAACTCCGGCAAGAGGCATTGCTGGAGGGATA
TGGCTTTGAATGCACCTGTTCGCGTTGTTCTTCTTTGGAAGAACAGTGGC
GGGAGACGCAGGTCGTGGGTTGGGCGTGTCCTCGGCGAGGGTGTCTTGGG
GCTTGCGTGGAGGAACCGCAGGGCGCTGCGTTGTTCCGTGCATGGCGTGC
GACTAGAGATGGTATAGTTGAGTGCAACGAATCACGGGCACGCGTATGTA
CCGCTTGTGGGGCACGCTTGGAAGTGAATGAAGTACATAAACGGCAGGCA
GACTTGGAGAAGGCGGAGCACCATAGACAGGAGTTTGACAGACTCCTGGC
GCATCGAGGCAGTCAAAAGGCCGATGCCCTGCGGGATGCACTCAAAGAAG
CTGACAAGATCTGCGACGTGTATGCCCGGTGCTTGATTCCGCACATCTCC
CTCTGTAGGTACGAGTTCATGACGCGCCTCGTCGAAGAGTGCATCCAGTT
GCAGGAGTTCGGCTTGATGATCAAGTACGGCGTGTTGAGCTCAGCAGGCC
TGGAAGCTATCAGCCCACGCCATTCACCGGCATCCGCATATCTGTATGCA
AATTTGGGAAAGGCCTTGTTGTATATCCACGAACCAGCACAGGCATTAAC
CTACCTATGCAAGGCGATGCAGAAGTTGGAGGCGTCGCACGGGCAAGATC
ACCACTACATGCGTGAGGTCGAAAGGTTGCTGATGGATGCGCAACACACA
ACTGGAAGAAAGAAGTAGAGCGGAGGACATGTCAAATAGATGAATGCGAG
CCGTGAGCTTTGAACGACGCAAAGATGTCTGTAACATGCCGGCACAAAGG
ACGGGGGACATTGGTAGAAATGCAGGAATTAGAATTTAACAACGAACAGT
GGAGTAAGTTTTCAAAGTGACTGAAAATGGGATTAGCATGAGCATAAGTA
CATAAGCATTAATGTGAAATAAAAGTAAATGCTGTAAAAGTAACAACGAA
AAGGATGGGGGACGGATTAGGAGGAGGTTAATTTTTGTGGCTCCACAAAA
AGATAAAGTAGAAAAATCA
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protein sequence of NO22G00580.1

>NO22G00580.1-protein ID=NO22G00580.1-protein|Name=NO22G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=512bp
MAPSPPPAWRVIHTGSKGRCLVASRALHSGTDVLACYADAWALFEKQRGS
RCAYCLRMPECEKALLVCNTCEAFAYCSRHCQEQDLSEHESECASIAHLD
RVPPPTMLMTARLVRRVGVEALTRQDPDKRSLFRALQQLVHHTDKASPVR
LKQFLFAANQICGLLVLPPAPADMATIVAKLGGPRFVARLLAQIGCNAFT
ITDGDAEVLGVGLFLGAVSANHSCDPNCHQIFEGPYIRLRALRPIAPGEE
LTIGYIDISNTRKLRQEALLEGYGFECTCSRCSSLEEQWRETQVVGWACP
RRGCLGACVEEPQGAALFRAWRATRDGIVECNESRARVCTACGARLEVNE
VHKRQADLEKAEHHRQEFDRLLAHRGSQKADALRDALKEADKICDVYARC
LIPHISLCRYEFMTRLVEECIQLQEFGLMIKYGVLSSAGLEAISPRHSPA
SAYLYANLGKALLYIHEPAQALTYLCKAMQKLEASHGQDHHYMREVERLL
MDAQHTTGRKK*
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mRNA from alignment at chr22:197223..199191-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00580.1 ID=NO22G00580.1|Name=NO22G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1969bp|location=Sequence derived from alignment at chr22:197223..199191- (Nannochloropsis oceanica)
CTCGCATCCCACACACTCCATGTCTACATACTGTACACAGGAACACCGAC
GACGCCTGCACTGCGATTGAGTCCAGTCATCGCGGAAGAAACGAGGAAGG
AACGCGGCAACGGGCAGCGACGAGCACTCATCATGGCCCCTTCCCCACCG
CCGGCCTGGCGAGTAATTCACACAGGGAGCAAAGGGCGATGCCTCGTCGC
CTCTCGTGCCTTGCATTCTGGTACCGATGTGCTTGCCTGCTATGCAGACG
CCTGGGCTTTGTTTGAAAAGCAACGCGGCTCTCGGTGTGCCTACTGCTTA
CGAATGCCCGAGTGCGAGAAGGCCCTGCTTGTGTGCAACACCTGTGAGGC
CTTTGCCTACTGTTCCCGCCACTGCCAAGAACAAGACTTATCAGAACACG
AGTCTGAATGTGCTAGCATTGCCCATCTGGACAGGGTTCCACCCCCTACA
ATGCTCATGACAGCGCGGCTGGTCCGCCGTGTGGGCGTCGAAGCCCTCAC
ACGTCAAGACCCCGACAAGCGCTCCCTCTTCAGAGCCCTCCAGCAGCTCG
TCCACCACACAGACAAGGCCTCGCCCGTCCGTCTAAAGCAATTTTTGTTT
GCCGCTAATCAGATCTGTGGACTATTGGTTCTCCCTCCCGCCCCCGCAGA
CATGGCCACTATCGTCGCGAAGCTAGGTGGGCCTCGCTTTGTGGCCCGTT
TACTCGCTCAAATTGGGTGCAACGCATTCACCATCACCGACGGGGACGCT
GAAGTCCTGGGTGTCGGTCTCTTTCTTGGTGCGGTGTCCGCAAACCACTC
TTGTGACCCCAATTGCCATCAGATATTCGAGGGTCCCTACATCCGACTAA
GGGCCTTGCGCCCCATTGCGCCTGGGGAGGAATTGACGATTGGCTACATT
GACATCAGCAACACTCGTAAACTCCGGCAAGAGGCATTGCTGGAGGGATA
TGGCTTTGAATGCACCTGTTCGCGTTGTTCTTCTTTGGAAGAACAGTGGC
GGGAGACGCAGGTCGTGGGTTGGGCGTGTCCTCGGCGAGGGTGTCTTGGG
GCTTGCGTGGAGGAACCGCAGGGCGCTGCGTTGTTCCGTGCATGGCGTGC
GACTAGAGATGGTATAGTTGAGTGCAACGAATCACGGGCACGCGTATGTA
CCGCTTGTGGGGCACGCTTGGAAGTGAATGAAGTACATAAACGGCAGGCA
GACTTGGAGAAGGCGGAGCACCATAGACAGGAGTTTGACAGACTCCTGGC
GCATCGAGGCAGTCAAAAGGCCGATGCCCTGCGGGATGCACTCAAAGAAG
CTGACAAGATCTGCGACGTGTATGCCCGGTGCTTGATTCCGCACATCTCC
CTCTGTAGGTACGAGTTCATGACGCGCCTCGTCGAAGAGTGCATCCAGTT
GCAGGAGTTCGGCTTGATGATCAAGTACGGCGTGTTGAGCTCAGCAGGCC
TGGAAGCTATCAGCCCACGCCATTCACCGGCATCCGCATATCTGTATGCA
AATTTGGGAAAGGCCTTGTTGTATATCCACGAACCAGCACAGGCATTAAC
CTACCTATGCAAGGCGATGCAGAAGTTGGAGGCGTCGCACGGGCAAGATC
ACCACTACATGCGTGAGGTCGAAAGGTTGCTGATGGATGCGCAACACACA
ACTGGAAGAAAGAAGTAGAGCGGAGGACATGTCAAATAGATGAATGCGAG
CCGTGAGCTTTGAACGACGCAAAGATGTCTGTAACATGCCGGCACAAAGG
ACGGGGGACATTGGTAGAAATGCAGGAATTAGAATTTAACAACGAACAGT
GGAGTAAGTTTTCAAAGTGACTGAAAATGGGATTAGCATGAGCATAAGTA
CATAAGCATTAATGTGAAATAAAAGTAAATGCTGTAAAAGTAACAACGAA
AAGGATGGGGGACGGATTAGGAGGAGGTTAATTTTTGTGGCTCCACAAAA
AGATAAAGTAGAAAAATCA
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Coding sequence (CDS) from alignment at chr22:197223..199191-

>NO22G00580.1 ID=NO22G00580.1|Name=NO22G00580.1|organism=Nannochloropsis oceanica|type=CDS|length=1536bp|location=Sequence derived from alignment at chr22:197223..199191- (Nannochloropsis oceanica)
ATGGCCCCTTCCCCACCGCCGGCCTGGCGAGTAATTCACACAGGGAGCAA
AGGGCGATGCCTCGTCGCCTCTCGTGCCTTGCATTCTGGTACCGATGTGC
TTGCCTGCTATGCAGACGCCTGGGCTTTGTTTGAAAAGCAACGCGGCTCT
CGGTGTGCCTACTGCTTACGAATGCCCGAGTGCGAGAAGGCCCTGCTTGT
GTGCAACACCTGTGAGGCCTTTGCCTACTGTTCCCGCCACTGCCAAGAAC
AAGACTTATCAGAACACGAGTCTGAATGTGCTAGCATTGCCCATCTGGAC
AGGGTTCCACCCCCTACAATGCTCATGACAGCGCGGCTGGTCCGCCGTGT
GGGCGTCGAAGCCCTCACACGTCAAGACCCCGACAAGCGCTCCCTCTTCA
GAGCCCTCCAGCAGCTCGTCCACCACACAGACAAGGCCTCGCCCGTCCGT
CTAAAGCAATTTTTGTTTGCCGCTAATCAGATCTGTGGACTATTGGTTCT
CCCTCCCGCCCCCGCAGACATGGCCACTATCGTCGCGAAGCTAGGTGGGC
CTCGCTTTGTGGCCCGTTTACTCGCTCAAATTGGGTGCAACGCATTCACC
ATCACCGACGGGGACGCTGAAGTCCTGGGTGTCGGTCTCTTTCTTGGTGC
GGTGTCCGCAAACCACTCTTGTGACCCCAATTGCCATCAGATATTCGAGG
GTCCCTACATCCGACTAAGGGCCTTGCGCCCCATTGCGCCTGGGGAGGAA
TTGACGATTGGCTACATTGACATCAGCAACACTCGTAAACTCCGGCAAGA
GGCATTGCTGGAGGGATATGGCTTTGAATGCACCTGTTCGCGTTGTTCTT
CTTTGGAAGAACAGTGGCGGGAGACGCAGGTCGTGGGTTGGGCGTGTCCT
CGGCGAGGGTGTCTTGGGGCTTGCGTGGAGGAACCGCAGGGCGCTGCGTT
GTTCCGTGCATGGCGTGCGACTAGAGATGGTATAGTTGAGTGCAACGAAT
CACGGGCACGCGTATGTACCGCTTGTGGGGCACGCTTGGAAGTGAATGAA
GTACATAAACGGCAGGCAGACTTGGAGAAGGCGGAGCACCATAGACAGGA
GTTTGACAGACTCCTGGCGCATCGAGGCAGTCAAAAGGCCGATGCCCTGC
GGGATGCACTCAAAGAAGCTGACAAGATCTGCGACGTGTATGCCCGGTGC
TTGATTCCGCACATCTCCCTCTGTAGGTACGAGTTCATGACGCGCCTCGT
CGAAGAGTGCATCCAGTTGCAGGAGTTCGGCTTGATGATCAAGTACGGCG
TGTTGAGCTCAGCAGGCCTGGAAGCTATCAGCCCACGCCATTCACCGGCA
TCCGCATATCTGTATGCAAATTTGGGAAAGGCCTTGTTGTATATCCACGA
ACCAGCACAGGCATTAACCTACCTATGCAAGGCGATGCAGAAGTTGGAGG
CGTCGCACGGGCAAGATCACCACTACATGCGTGAGGTCGAAAGGTTGCTG
ATGGATGCGCAACACACAACTGGAAGAAAGAAGTAG
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Synonyms
Publications