NO22G00430.1, NO22G00430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00430.1
Unique NameNO22G00430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2691
Alignment locationchr22:156046..158736 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:156046..158736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00430.1 vs.
Match: WP_041036887.1 (type III pantothenate kinase [Tolypothrix campylonemoides]; KIJ76290.1 pantothenate kinase [Tolypothrix campylonemoides VB511288])

HSP 1 Score: 130.6 bits (327), Expect = 1.400e-26
Identity = 112/277 (40.43%), Postives = 145/277 (52.35%), Query Frame = 0 
Query:   31 LYLIIGNTRLHWAYLDSHLIGEKGTYIH-WNTRHATSADFLPSLSSSTTNNDKS------DKEKGTTTTSNSSSSVVSNSARGEDKENATYSDGIPSSFLPLAP--PPALLSLSPSIPFLLASVVPSQTSLWQQHYSTIHLITSYSVIPSLQHSYPTLGVDRALALIGAAGLYGWPCLVVDAGTALTFTAGTEEGECRGGMIMPGLRLALQTLHSRTALLPSLGLPSIPSSSASLNGPSSFPPPRFVHSTARAIQSGVVNGAIAVIRDYSLAFTREF 299
            L L+IGN+RLHWA    H  GE  T IH W+T +   AD +  LS S T  +        +KEK T+ +S S                      +P S  P +P  PP+L   SP IP LLASVVPSQT+LWQ  Y  + +IT   V   ++  Y TLG+DRALAL GA   + +P LV+DAGTALTF++        GG I+PGL L L TL  RT  LP + LP                P R+  +T  AIQSGV+   +A I+D+  A+ R+F
Sbjct:    8 LALMIGNSRLHWA----HFAGE--TLIHAWDTDYLP-ADVVQQLSQSPTLQNLPPEIFPLNKEKFTSPSSPS------------------LPPSLPPSLPPSSPSLPPSLPPSSPPIPLLLASVVPSQTALWQT-YPNVRIITLDQV--PIKGVYSTLGIDRALALCGAGQNWDFPMLVIDAGTALTFSSANANQCFVGGAILPGLGLQLATLSGRTGQLPKVELP-------------QQLPQRYALNTPEAIQSGVIYTLVAGIKDFIEAWWRDF 243
The following BLAST results are available for this feature:
BLAST of NO22G00430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_041036887.11.400e-2640.43type III pantothenate kinase [Tolypothrix campylon... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00430NO22G00430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00430.1NO22G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00430.1.cds1NO22G00430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00430.1 ID=NO22G00430.1|Name=NO22G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=2691bp
GCTCAGACAAACGCTGTTCTTTGATTTGTTGGGCGGAGGATTTTTTTTGT
TTGACCTTAAATCATGTTTTTCTTCGGTGTACAAATGTTCAACGGTTCCG
AAGAGCTTGGTACGGGGCAAGGTTGGGAGTAGGAATGCACTGTGTCGTGG
AGGGAGCCATGCGACATAATTAGGAAGAGTTCTGTGTTATGTGCCGTGAG
ACAGGGGCATGCTTCTTCCAGGTCCGGTGCATTCCCCAATTCAAGTCCCA
CCGTGGGATTGTGTCCTAGATCCACATTCCCGCTGACCTCCTCTTTTATC
CTCCTCCCCCTTCTCCTCCTGGCCCTGTGTGGGCCGTCCGGGGACTTTGC
CTGATCAACAAATCTGTCAAAGTCGCTAGAAAAACTCGGACCAAAAATAA
GGGATGAATATGCAACAATTTCTTGTTTGAAGGCTCCCCCTCTTATGCAA
GTCCTAGAGGACGCAGGTTGCATGCGATAGTTCTAGAGGGATGTAGGATC
GGCAAAAAGAACGAACTAGACCCGATTCTGTTGCTGCCATCGATGCTAGC
TGAACACGGCTACAACGTTTGACAAAAAAAAGCTGATGCCATTGCTATCA
CCACATCAGCTCTCACATCGGTAGATCACCATGTTCAATCGATCCCTCTC
CTTTGCCGCCACGAATTCAAGGTCATCCAGGCGTTTGCGTCTGATCGGCT
GCTGGTTACCACCACGCCTGCCGCCATCATCCCCACCGCCTCCACTGGCC
TTTCTGAAAAAGGTGACAGCAGCATCCTGTATCGTGTATAACGAGGGGAG
GAGGAGGTGCGGAATTGGGAAATATATGAGAGAGGGAGACGTGGTAGCAA
GCTGTAGGGGGGAGGTTGTCGCAACGCACTCCTGGCTGCGCATTTTATGC
AAATGAAAACCACTGCCACAGAACCTAACACATCATGAACGCAAACTATC
GACATATAGACGGGGGTTGGCCAGCGGAGGAAGGGGCCGCCACAAACGCG
ACAAACGATGGACGGCGCCGACCCAACTAGCCTTCCGGCTGCTTCCTCCA
CGCTACCACTTTCCCCACTTGAGACATCTACCATCGCCTCTTCCGCCCTT
TATCTAATCATCGGTAATACTCGCTTACATTGGGCCTACCTTGATTCGCA
CTTGATCGGTGAGAAGGGCACGTACATCCATTGGAATACACGGCACGCCA
CCTCGGCCGACTTCCTCCCTTCTCTCTCTTCCTCGACCACCAACAACGAC
AAGAGCGATAAGGAGAAAGGCACCACGACCACCAGCAACAGCAGTAGCAG
CGTCGTCAGCAACTCTGCAAGGGGCGAGGACAAAGAGAATGCCACATACA
GCGACGGCATTCCCTCCTCCTTCCTCCCCCTCGCCCCCCCACCCGCCCTC
CTCTCACTGTCCCCCTCCATTCCCTTCCTGCTTGCCTCCGTCGTCCCATC
CCAAACCTCCCTCTGGCAGCAGCACTACTCTACAATTCATCTTATCACCA
GTTACTCGGTCATACCCTCCTTGCAACATAGCTATCCTACCCTAGGGGTG
GATCGAGCTTTAGCTTTGATAGGGGCAGCGGGTCTCTATGGGTGGCCCTG
CCTCGTTGTCGACGCAGGCACAGCACTGACCTTTACTGCTGGCACAGAAG
AGGGTGAATGTAGAGGAGGGATGATCATGCCTGGCCTCCGTCTTGCACTC
CAAACGCTGCATAGCCGGACGGCGTTGCTCCCTTCCTTGGGCCTTCCTTC
CATCCCTTCCTCCTCCGCTTCCTTAAACGGTCCCTCCTCCTTCCCTCCGC
CTCGTTTCGTGCATTCTACTGCACGAGCCATTCAAAGTGGTGTGGTGAAT
GGTGCTATAGCTGTGATAAGAGATTATTCCCTGGCTTTCACCCGGGAGTT
TGCCCGTCAGAGGGAGAGGAAGAGGAGAAGGAGGAGGAGGAGCGGAGAGA
GGGAGGGAGGGACGAGTGGAGGAAAGAATGTGGAGTATGGCGATCCTTCT
GAATACGTTGAAAAAGGGGAGGAAAAGAAAGACTTCAGGAAAAAGGAGGA
AGAGATAGAGGGGTTTCGACCGCCGATTATTTTTACTGGAGGGGACGCTC
CCTTGTTGTTTGAGGCGGTGACTGTCAGGGAGAGGGAGGAGGAAGCGGAG
AATGATGGGGATGATGATGATGATGAGGATGATGATGATGATGATGATGA
TGATGATGATGGCGGGAAGAAGGTGGAAGTTGAGGAGATGGGAAAGATGA
AGAAGAAGAGAAAGAAAGCACCCGATTTGCATGATACGACAGGCAACAAA
AGGAATTGTAAAAATGACGTGAATAGCCGTAATAAATTGAATTTCATCCT
ACAAGGTGACGTAGGATTTCACGGACTCCATTCCGTGGCAGTAACGCACG
GTCTCCTTCCTCCCGCCCTTAGGAAAATTACATCACTACCAGCCAAGGTG
GTGTCGGCGGTGGGGGGGAGGGATGGAGGGAGGAAGGGGTCTGTGAGCGT
GGTTGGGAGGGAGGCCCAGAGGGCTTAAACCATGAGAGTTGGGGGGAAGA
TAACAAGTAAATTAGAAAACTCAAATGACTTCACGATAAATAGAAATATT
GCGGTCCAAGGTAATGAATGGAGAGGAAGGGCTAAGAAGGAAAGGGAGAT
ACGTTTCAACCTACACAACCAATAGCCATGCGTGTGGTGCG
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protein sequence of NO22G00430.1

>NO22G00430.1-protein ID=NO22G00430.1-protein|Name=NO22G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=507bp
MDGADPTSLPAASSTLPLSPLETSTIASSALYLIIGNTRLHWAYLDSHLI
GEKGTYIHWNTRHATSADFLPSLSSSTTNNDKSDKEKGTTTTSNSSSSVV
SNSARGEDKENATYSDGIPSSFLPLAPPPALLSLSPSIPFLLASVVPSQT
SLWQQHYSTIHLITSYSVIPSLQHSYPTLGVDRALALIGAAGLYGWPCLV
VDAGTALTFTAGTEEGECRGGMIMPGLRLALQTLHSRTALLPSLGLPSIP
SSSASLNGPSSFPPPRFVHSTARAIQSGVVNGAIAVIRDYSLAFTREFAR
QRERKRRRRRRSGEREGGTSGGKNVEYGDPSEYVEKGEEKKDFRKKEEEI
EGFRPPIIFTGGDAPLLFEAVTVREREEEAENDGDDDDDEDDDDDDDDDD
DGGKKVEVEEMGKMKKKRKKAPDLHDTTGNKRNCKNDVNSRNKLNFILQG
DVGFHGLHSVAVTHGLLPPALRKITSLPAKVVSAVGGRDGGRKGSVSVVG
REAQRA*
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mRNA from alignment at chr22:156046..158736+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00430.1 ID=NO22G00430.1|Name=NO22G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=2691bp|location=Sequence derived from alignment at chr22:156046..158736+ (Nannochloropsis oceanica)
GCTCAGACAAACGCTGTTCTTTGATTTGTTGGGCGGAGGATTTTTTTTGT
TTGACCTTAAATCATGTTTTTCTTCGGTGTACAAATGTTCAACGGTTCCG
AAGAGCTTGGTACGGGGCAAGGTTGGGAGTAGGAATGCACTGTGTCGTGG
AGGGAGCCATGCGACATAATTAGGAAGAGTTCTGTGTTATGTGCCGTGAG
ACAGGGGCATGCTTCTTCCAGGTCCGGTGCATTCCCCAATTCAAGTCCCA
CCGTGGGATTGTGTCCTAGATCCACATTCCCGCTGACCTCCTCTTTTATC
CTCCTCCCCCTTCTCCTCCTGGCCCTGTGTGGGCCGTCCGGGGACTTTGC
CTGATCAACAAATCTGTCAAAGTCGCTAGAAAAACTCGGACCAAAAATAA
GGGATGAATATGCAACAATTTCTTGTTTGAAGGCTCCCCCTCTTATGCAA
GTCCTAGAGGACGCAGGTTGCATGCGATAGTTCTAGAGGGATGTAGGATC
GGCAAAAAGAACGAACTAGACCCGATTCTGTTGCTGCCATCGATGCTAGC
TGAACACGGCTACAACGTTTGACAAAAAAAAGCTGATGCCATTGCTATCA
CCACATCAGCTCTCACATCGGTAGATCACCATGTTCAATCGATCCCTCTC
CTTTGCCGCCACGAATTCAAGGTCATCCAGGCGTTTGCGTCTGATCGGCT
GCTGGTTACCACCACGCCTGCCGCCATCATCCCCACCGCCTCCACTGGCC
TTTCTGAAAAAGGTGACAGCAGCATCCTGTATCGTGTATAACGAGGGGAG
GAGGAGGTGCGGAATTGGGAAATATATGAGAGAGGGAGACGTGGTAGCAA
GCTGTAGGGGGGAGGTTGTCGCAACGCACTCCTGGCTGCGCATTTTATGC
AAATGAAAACCACTGCCACAGAACCTAACACATCATGAACGCAAACTATC
GACATATAGACGGGGGTTGGCCAGCGGAGGAAGGGGCCGCCACAAACGCG
ACAAACGATGGACGGCGCCGACCCAACTAGCCTTCCGGCTGCTTCCTCCA
CGCTACCACTTTCCCCACTTGAGACATCTACCATCGCCTCTTCCGCCCTT
TATCTAATCATCGGTAATACTCGCTTACATTGGGCCTACCTTGATTCGCA
CTTGATCGGTGAGAAGGGCACGTACATCCATTGGAATACACGGCACGCCA
CCTCGGCCGACTTCCTCCCTTCTCTCTCTTCCTCGACCACCAACAACGAC
AAGAGCGATAAGGAGAAAGGCACCACGACCACCAGCAACAGCAGTAGCAG
CGTCGTCAGCAACTCTGCAAGGGGCGAGGACAAAGAGAATGCCACATACA
GCGACGGCATTCCCTCCTCCTTCCTCCCCCTCGCCCCCCCACCCGCCCTC
CTCTCACTGTCCCCCTCCATTCCCTTCCTGCTTGCCTCCGTCGTCCCATC
CCAAACCTCCCTCTGGCAGCAGCACTACTCTACAATTCATCTTATCACCA
GTTACTCGGTCATACCCTCCTTGCAACATAGCTATCCTACCCTAGGGGTG
GATCGAGCTTTAGCTTTGATAGGGGCAGCGGGTCTCTATGGGTGGCCCTG
CCTCGTTGTCGACGCAGGCACAGCACTGACCTTTACTGCTGGCACAGAAG
AGGGTGAATGTAGAGGAGGGATGATCATGCCTGGCCTCCGTCTTGCACTC
CAAACGCTGCATAGCCGGACGGCGTTGCTCCCTTCCTTGGGCCTTCCTTC
CATCCCTTCCTCCTCCGCTTCCTTAAACGGTCCCTCCTCCTTCCCTCCGC
CTCGTTTCGTGCATTCTACTGCACGAGCCATTCAAAGTGGTGTGGTGAAT
GGTGCTATAGCTGTGATAAGAGATTATTCCCTGGCTTTCACCCGGGAGTT
TGCCCGTCAGAGGGAGAGGAAGAGGAGAAGGAGGAGGAGGAGCGGAGAGA
GGGAGGGAGGGACGAGTGGAGGAAAGAATGTGGAGTATGGCGATCCTTCT
GAATACGTTGAAAAAGGGGAGGAAAAGAAAGACTTCAGGAAAAAGGAGGA
AGAGATAGAGGGGTTTCGACCGCCGATTATTTTTACTGGAGGGGACGCTC
CCTTGTTGTTTGAGGCGGTGACTGTCAGGGAGAGGGAGGAGGAAGCGGAG
AATGATGGGGATGATGATGATGATGAGGATGATGATGATGATGATGATGA
TGATGATGATGGCGGGAAGAAGGTGGAAGTTGAGGAGATGGGAAAGATGA
AGAAGAAGAGAAAGAAAGCACCCGATTTGCATGATACGACAGGCAACAAA
AGGAATTGTAAAAATGACGTGAATAGCCGTAATAAATTGAATTTCATCCT
ACAAGGTGACGTAGGATTTCACGGACTCCATTCCGTGGCAGTAACGCACG
GTCTCCTTCCTCCCGCCCTTAGGAAAATTACATCACTACCAGCCAAGGTG
GTGTCGGCGGTGGGGGGGAGGGATGGAGGGAGGAAGGGGTCTGTGAGCGT
GGTTGGGAGGGAGGCCCAGAGGGCTTAAACCATGAGAGTTGGGGGGAAGA
TAACAAGTAAATTAGAAAACTCAAATGACTTCACGATAAATAGAAATATT
GCGGTCCAAGGTAATGAATGGAGAGGAAGGGCTAAGAAGGAAAGGGAGAT
ACGTTTCAACCTACACAACCAATAGCCATGCGTGTGGTGCG
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Coding sequence (CDS) from alignment at chr22:156046..158736+

>NO22G00430.1 ID=NO22G00430.1|Name=NO22G00430.1|organism=Nannochloropsis oceanica|type=CDS|length=1521bp|location=Sequence derived from alignment at chr22:156046..158736+ (Nannochloropsis oceanica)
ATGGACGGCGCCGACCCAACTAGCCTTCCGGCTGCTTCCTCCACGCTACC
ACTTTCCCCACTTGAGACATCTACCATCGCCTCTTCCGCCCTTTATCTAA
TCATCGGTAATACTCGCTTACATTGGGCCTACCTTGATTCGCACTTGATC
GGTGAGAAGGGCACGTACATCCATTGGAATACACGGCACGCCACCTCGGC
CGACTTCCTCCCTTCTCTCTCTTCCTCGACCACCAACAACGACAAGAGCG
ATAAGGAGAAAGGCACCACGACCACCAGCAACAGCAGTAGCAGCGTCGTC
AGCAACTCTGCAAGGGGCGAGGACAAAGAGAATGCCACATACAGCGACGG
CATTCCCTCCTCCTTCCTCCCCCTCGCCCCCCCACCCGCCCTCCTCTCAC
TGTCCCCCTCCATTCCCTTCCTGCTTGCCTCCGTCGTCCCATCCCAAACC
TCCCTCTGGCAGCAGCACTACTCTACAATTCATCTTATCACCAGTTACTC
GGTCATACCCTCCTTGCAACATAGCTATCCTACCCTAGGGGTGGATCGAG
CTTTAGCTTTGATAGGGGCAGCGGGTCTCTATGGGTGGCCCTGCCTCGTT
GTCGACGCAGGCACAGCACTGACCTTTACTGCTGGCACAGAAGAGGGTGA
ATGTAGAGGAGGGATGATCATGCCTGGCCTCCGTCTTGCACTCCAAACGC
TGCATAGCCGGACGGCGTTGCTCCCTTCCTTGGGCCTTCCTTCCATCCCT
TCCTCCTCCGCTTCCTTAAACGGTCCCTCCTCCTTCCCTCCGCCTCGTTT
CGTGCATTCTACTGCACGAGCCATTCAAAGTGGTGTGGTGAATGGTGCTA
TAGCTGTGATAAGAGATTATTCCCTGGCTTTCACCCGGGAGTTTGCCCGT
CAGAGGGAGAGGAAGAGGAGAAGGAGGAGGAGGAGCGGAGAGAGGGAGGG
AGGGACGAGTGGAGGAAAGAATGTGGAGTATGGCGATCCTTCTGAATACG
TTGAAAAAGGGGAGGAAAAGAAAGACTTCAGGAAAAAGGAGGAAGAGATA
GAGGGGTTTCGACCGCCGATTATTTTTACTGGAGGGGACGCTCCCTTGTT
GTTTGAGGCGGTGACTGTCAGGGAGAGGGAGGAGGAAGCGGAGAATGATG
GGGATGATGATGATGATGAGGATGATGATGATGATGATGATGATGATGAT
GATGGCGGGAAGAAGGTGGAAGTTGAGGAGATGGGAAAGATGAAGAAGAA
GAGAAAGAAAGCACCCGATTTGCATGATACGACAGGCAACAAAAGGAATT
GTAAAAATGACGTGAATAGCCGTAATAAATTGAATTTCATCCTACAAGGT
GACGTAGGATTTCACGGACTCCATTCCGTGGCAGTAACGCACGGTCTCCT
TCCTCCCGCCCTTAGGAAAATTACATCACTACCAGCCAAGGTGGTGTCGG
CGGTGGGGGGGAGGGATGGAGGGAGGAAGGGGTCTGTGAGCGTGGTTGGG
AGGGAGGCCCAGAGGGCTTAA
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Synonyms
Publications