NO22G00420.1, NO22G00420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00420.1
Unique NameNO22G00420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1525
Alignment locationchr22:154118..156045 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:154118..156045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00420.1 vs.
Match: EWM21391.1 (transaldolase [Nannochloropsis gaditana])

HSP 1 Score: 246.5 bits (628), Expect = 1.500e-61
Identity = 136/215 (63.26%), Postives = 162/215 (75.35%), Query Frame = 0 
Query:   15 LLFSTLHSSCSWHPAASLPSYAY----------HFSRPSSLCMQASSASRPPSNLLAQVRRHSLVIADTADYLQLEYLPDVWEVTTNPSIVWQAAQKEEFFHLLEEACNMYLPLQKEGIPDMIEAVPPKFAREIFKRLPRAPSSSSPSRSSSSPTSFMRKVYIQLDPRFSFNEDLAVKKALHLVYLCVEKHNIPLENVVIKIPGSWEGIQAARRL 220
            LL ++  SS SW P A  PS ++          +FS  S + M+A+S+SR PSNLLAQVR HS VI DTADYLQL +LP   EVTTNPSIVWQAAQKEE+FHLLEEACNMYLPL  +GIPDM+EAVPPKFAREI+KRLP APSSSS           + +VY+QLDPR++F+ DLAV+++L LV LCV KH +PL N+VIKIPGSWEGIQAA+ L
Sbjct:   14 LLATSPSSSFSW-PRAFFPSPSHGGPPPARTTRYFSPASKMYMKATSSSRTPSNLLAQVRCHSQVILDTADYLQLAHLPGTLEVTTNPSIVWQAAQKEEYFHLLEEACNMYLPLGIDGIPDMLEAVPPKFAREIWKRLPHAPSSSSLP---------LPRVYVQLDPRYAFDIDLAVRQSLALVDLCVHKHQLPLSNLVIKIPGSWEGIQAAKDL 218
The following BLAST results are available for this feature:
BLAST of NO22G00420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21391.11.500e-6163.26transaldolase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00420NO22G00420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00420.1NO22G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00420.1.cds1NO22G00420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00420.1.cds2NO22G00420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00420.1.cds3NO22G00420.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00420.1 ID=NO22G00420.1|Name=NO22G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1525bp
AAAACACACGCACAGCCACCTCGCCATCAGTACCCAGCAGCGGTAACAGC
AGCAGCGGCAGCAACAGCCGCATGGCAACAAGTCCACGCCTCAAATCTTG
GTTTTCCCTCCTTCTTCTCTTCTCCACTCTCCACTCTTCCTGCTCTTGGC
ACCCTGCTGCTTCCCTCCCTAGCTATGCCTACCACTTCTCTCGCCCCTCA
TCCCTGTGCATGCAGGCTTCCTCCGCATCTCGTCCCCCTTCCAACCTCCT
AGCGCAAGTCCGTCGGCACTCCCTTGTCATCGCCGACACGGCCGATTATC
TGCAACTTGAATACCTGCCGGATGTATGGGAAGTGACGACGAACCCCTCC
ATTGTTTGGCAGGCGGCTCAGAAAGAGGAGTTCTTTCATCTGCTCGAAGA
AGCCTGTAATATGTACCTTCCCCTCCAGAAGGAAGGCATCCCTGACATGA
TCGAAGCTGTCCCCCCAAAGTTTGCCCGGGAGATCTTCAAACGCCTCCCC
CGGGCTCCCTCCTCTTCCTCCCCCTCCCGCTCTTCCTCCTCTCCTACCTC
CTTCATGCGTAAGGTCTACATTCAACTCGACCCCCGTTTTTCGTTCAACG
AAGATTTGGCAGTTAAAAAGGCTCTTCATTTAGTGTACTTGTGCGTGGAA
AAACATAATATTCCTCTTGAGAATGTAGTAATAAAAATACCCGGATCCTG
GGAAGGAATTCAGGCGGCCAGGAGGTTGGAGGAGGGAGGGGGGGAGGGAG
GGAGGGAGGGAGGGGTACGGTGTTTGGTGACGGCGGTGACGTCGATTGTC
CAGGCGAGGGCAGCGGCAGAGGCCGGGGTGAGCTACGTGGCTCCGTACGT
GGGAAGGGTGAGTGATTGGGAAGGGGAGGAGGCAGGAAGGGAGGTAGGGA
AGGAGGGAGGGATGGAGCGAGGGGTGGGTTTGGCCAGGGACATGCAGATG
TTGTTTCAGATGAGGGGGTGGGGGAAGACCAAAGTGATGGCAGCAAGTCT
GAGGGGACCCGAGCAGATCAAGGCCCTGATAGGGTGTGATATCCTGACCG
TGAGTCCCAAGGTAATGATCGCGCTGGAATGCTTAGAGCCTGTGGAGGAG
GAGATAGGGAAGGAGGGAGGGAAGGAGGTATCTTCTTCCTTTCTCCCCGA
GGTACCGACGTGGGAAGATCTAACGCCTCGATCACGACGTCTATTGGGAG
GGAAGGAAGGGAAGGAAGGATGGGCGAAATGGACGGAGGAGGAGTTCCGG
GTAGCGTTGCAGAGGGATGCATGTGGGACCGCAGTGTTCGCGAAGAGCAT
GAAGCTTTTTGTGGAGGATCTACGTGCCTTAGAAAAAGTGTTTTTTGACT
ATTTGGACGACCAGCATAGGCGGAGATAAAGCAAGGAGGAGAACACCGCT
GTGCGAGAGCACCACGAGGTGCATTAAACGTGCATGTTGTTTGTCGTGCG
ACAAGAGGTGAGTTTGAGTAGGATGCATTCAAATTAACTACAAAATAAAA
GTCATGACCGTCAAGATTTTATGAA
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protein sequence of NO22G00420.1

>NO22G00420.1-protein ID=NO22G00420.1-protein|Name=NO22G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MATSPRLKSWFSLLLLFSTLHSSCSWHPAASLPSYAYHFSRPSSLCMQAS
SASRPPSNLLAQVRRHSLVIADTADYLQLEYLPDVWEVTTNPSIVWQAAQ
KEEFFHLLEEACNMYLPLQKEGIPDMIEAVPPKFAREIFKRLPRAPSSSS
PSRSSSSPTSFMRKVYIQLDPRFSFNEDLAVKKALHLVYLCVEKHNIPLE
NVVIKIPGSWEGIQAARRLEEGGGEGGREGGVRCLVTAVTSIVQARAAAE
AGVSYVAPYVGRVSDWEGEEAGREVGKEGGMERGVGLARDMQMLFQMRGW
GKTKVMAASLRGPEQIKALIGCDILTVSPKVMIALECLEPVEEEIGKEGG
KEVSSSFLPEVPTWEDLTPRSRRLLGGKEGKEGWAKWTEEEFRVALQRDA
CGTAVFAKSMKLFVEDLRALEKVFFDYLDDQHRRR*
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mRNA from alignment at chr22:154118..156045+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00420.1 ID=NO22G00420.1|Name=NO22G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1928bp|location=Sequence derived from alignment at chr22:154118..156045+ (Nannochloropsis oceanica)
AAAACACACGCACAGCCACCTCGCCATCAGTACCCAGCAGCGGTAACAGC
AGCAGCGGCAGCAACAGCCGCATGGCAACAAGTCCACGCCTCAAATCTTG
GTTTTCCCTCCTTCTTCTCTTCTCCACTCTCCACTCTTCCTGCTCTTGGC
ACCCTGCTGCTTCCCTCCCTAGCTATGCCTACCACTTCTCTCGCCCCTCA
TCCCTGTGCATGCAGGCTTCCTCCGCATCTCGTCCCCCTTCCAACCTCCT
AGCGCAAGTCCGTCGGCACTCCCTTGTCATCGCCGACACGGCCGATTATC
TGCAACTTGAATACCTGCCGGATGTATGGGAAGTGACGACGAACCCCTCC
ATTGTTTGGCAGGCGGCTCAGAAAGAGGAGTTCTTTCATCTGCTCGAAGA
AGCCTGTAATGTACGTGCGCGACGCGTTCATCTGGATTATTCTATCCTGC
AGTTTGTGTGTGCGTATCTGCGCTTGCATGCTACTAGGCAAGAGAGGGAT
GAAGGTGAAAGCCACAATCCGAACGATTCCATTCCCTTCCTTCCTCCCTT
CCTCCCTTCCTCCCTTCCTCCCTCCTCTCCCACAGATGTACCTTCCCCTC
CAGAAGGAAGGCATCCCTGACATGATCGAAGCTGTCCCCCCAAAGTTTGC
CCGGGAGATCTTCAAACGCCTCCCCCGGGCTCCCTCCTCTTCCTCCCCCT
CCCGCTCTTCCTCCTCTCCTACCTCCTTCATGCGTAAGGTCTACATTCAA
CTCGACCCCCGTTTTTCGTTCAACGAAGATTTGGCAGTTAAAAAGGCTCT
TCATTTAGTGTACTTGTGCGTGGAAAAACATAATATTCCTCTTGAGAATG
TAGTAATAAAAATACCCGGATCCTGGGAAGGAATTCAGGCGGCCAGGAGG
TTGGAGGAGGGAGGGGGGGAGGGAGGGAGGGAGGGAGGGGTACGGTGTTT
GGTGACGGCGGTGACGTCGATTGTCCAGGCGAGGGCAGCGGCAGAGGCCG
GGGTGAGCTACGTGGCTCCGTACGTGGGAAGGGTGAGTGATTGGGAAGGG
GAGGAGGCAGGAAGGGAGGTAGGGAAGGAGGGAGGGATGGAGCGAGGGGT
GGGTTTGGCCAGGGACATGCAGATGTTGTTTCAGATGAGGGGGTGGGGGA
AGACCAAAGTGATGGCAGCAAGTCTGAGGGGACCCGAGCAGATCAAGGCC
CTGATAGGGTGTGATATCCTGACCGTGAGTCCCAAGGTAATGATCGCGCT
GGAATGCTTAGAGCCTGTGGAGGAGGAGATAGGGAAGGAGGGAGGGAAGG
AGGTATCTTCTTCCTTTCTCCCCGAGGTACCGACGTGGGAAGATCTAACG
CCTCGATCACGACGTCTATTGGGAGGGAAGGAAGGGAAGGAAGGATGGGC
GAAATGGACGGAGGAGGAGTTCCGGGTAGCGTTGCAGAGGGATGCATGTG
GGACCGCAGTGTTCGCGAAGAGCATGAAGCTTTTTGTGGAGGTGCGTTGT
ACGTTGCTTGCTTTCCTTACATGCAGGGAGCGGAGGAATAGAAGGGAGGG
GAGAAAACAAAAAAGCGGGGGAGGATGGCAGGGGGGTTTCGTGTGAGTTT
TTTGCATTCTCCCCATTGGCCGACTCGCACACCGGGGCTGCAGAGGGAGA
GAGGAAGGGTGTATGCATATGCTGACTGCTCTTCTTCTCCCTTCTCCTCC
TCCAATCTACCCACCACAGGATCTACGTGCCTTAGAAAAAGTGTTTTTTG
ACTATTTGGACGACCAGCATAGGCGGAGATAAAGCAAGGAGGAGAACACC
GCTGTGCGAGAGCACCACGAGGTGCATTAAACGTGCATGTTGTTTGTCGT
GCGACAAGAGGTGAGTTTGAGTAGGATGCATTCAAATTAACTACAAAATA
AAAGTCATGACCGTCAAGATTTTATGAA
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Coding sequence (CDS) from alignment at chr22:154118..156045+

>NO22G00420.1 ID=NO22G00420.1|Name=NO22G00420.1|organism=Nannochloropsis oceanica|type=CDS|length=1308bp|location=Sequence derived from alignment at chr22:154118..156045+ (Nannochloropsis oceanica)
ATGGCAACAAGTCCACGCCTCAAATCTTGGTTTTCCCTCCTTCTTCTCTT
CTCCACTCTCCACTCTTCCTGCTCTTGGCACCCTGCTGCTTCCCTCCCTA
GCTATGCCTACCACTTCTCTCGCCCCTCATCCCTGTGCATGCAGGCTTCC
TCCGCATCTCGTCCCCCTTCCAACCTCCTAGCGCAAGTCCGTCGGCACTC
CCTTGTCATCGCCGACACGGCCGATTATCTGCAACTTGAATACCTGCCGG
ATGTATGGGAAGTGACGACGAACCCCTCCATTGTTTGGCAGGCGGCTCAG
AAAGAGGAGTTCTTTCATCTGCTCGAAGAAGCCTGTAATATGTACCTTCC
CCTCCAGAAGGAAGGCATCCCTGACATGATCGAAGCTGTCCCCCCAAAGT
TTGCCCGGGAGATCTTCAAACGCCTCCCCCGGGCTCCCTCCTCTTCCTCC
CCCTCCCGCTCTTCCTCCTCTCCTACCTCCTTCATGCGTAAGGTCTACAT
TCAACTCGACCCCCGTTTTTCGTTCAACGAAGATTTGGCAGTTAAAAAGG
CTCTTCATTTAGTGTACTTGTGCGTGGAAAAACATAATATTCCTCTTGAG
AATGTAGTAATAAAAATACCCGGATCCTGGGAAGGAATTCAGGCGGCCAG
GAGGTTGGAGGAGGGAGGGGGGGAGGGAGGGAGGGAGGGAGGGGTACGGT
GTTTGGTGACGGCGGTGACGTCGATTGTCCAGGCGAGGGCAGCGGCAGAG
GCCGGGGTGAGCTACGTGGCTCCGTACGTGGGAAGGGTGAGTGATTGGGA
AGGGGAGGAGGCAGGAAGGGAGGTAGGGAAGGAGGGAGGGATGGAGCGAG
GGGTGGGTTTGGCCAGGGACATGCAGATGTTGTTTCAGATGAGGGGGTGG
GGGAAGACCAAAGTGATGGCAGCAAGTCTGAGGGGACCCGAGCAGATCAA
GGCCCTGATAGGGTGTGATATCCTGACCGTGAGTCCCAAGGTAATGATCG
CGCTGGAATGCTTAGAGCCTGTGGAGGAGGAGATAGGGAAGGAGGGAGGG
AAGGAGGTATCTTCTTCCTTTCTCCCCGAGGTACCGACGTGGGAAGATCT
AACGCCTCGATCACGACGTCTATTGGGAGGGAAGGAAGGGAAGGAAGGAT
GGGCGAAATGGACGGAGGAGGAGTTCCGGGTAGCGTTGCAGAGGGATGCA
TGTGGGACCGCAGTGTTCGCGAAGAGCATGAAGCTTTTTGTGGAGGATCT
ACGTGCCTTAGAAAAAGTGTTTTTTGACTATTTGGACGACCAGCATAGGC
GGAGATAA
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Synonyms
Publications