NO22G00310.3, NO22G00310.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00310.3
Unique NameNO22G00310.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1175
Alignment locationchr22:114871..116809 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:114871..116809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00310.3 vs.
Match: CBJ26066.1 (ATP-dependent Clp protease, proteolytic subunit ClpP [Ectocarpus siliculosus])

HSP 1 Score: 251.9 bits (642), Expect = 2.600e-63
Identity = 120/160 (75.00%), Postives = 137/160 (85.62%), Query Frame = 0 
Query:   42 LSVIPMVTESTPRGERITDIYSRLLKERIIMCHGPVTEPMASLITAQLLFLEAENPDKPCYMYINSPGGIVTAGLAIYDTMQYIRPPVATICMGQASSMGSLLLTAGEPGMRMALPNSKIMLHQPRGGAEGMASDIDIMAREILKTRERLNALYVQHTGQ 202
            ++ +PMV ESTPRGER  DIYSRLL+ERII  HGPVTE M SL+TAQLLFLE+ENPDKP  MYINSPGG+VTAGLAIYDTMQY+RP + TICMGQA+SMGSLLLTAG P MR  LPN+K+MLHQP GGA GMA+DI IMA EI+KTR RLN +Y +HTG+
Sbjct:   40 MNYLPMVLESTPRGERAYDIYSRLLRERIICMHGPVTEQMTSLVTAQLLFLESENPDKPINMYINSPGGVVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPEMRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLNDIYAEHTGR 199
The following BLAST results are available for this feature:
BLAST of NO22G00310.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ26066.12.600e-6375.00ATP-dependent Clp protease, proteolytic subunit Cl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00310NO22G00310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00310.3NO22G00310.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00310.3.cds1NO22G00310.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00310.3.cds2NO22G00310.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00310.3.cds3NO22G00310.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00310.3.cds4NO22G00310.3.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00310.3.cds5NO22G00310.3.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00310.3 ID=NO22G00310.3|Name=NO22G00310.3|organism=Nannochloropsis oceanica|type=mRNA|length=1175bp
ACCACAGACGCCAAAATGTTGAAGACTTTATTGCGGCGGCAGGCCCGAAC
CGTAAGCATGACTCCCCGTGCTCCCTTCTTGCCCTCCTCCCCTACTACAA
CCTCCTTCCCCCTTGCCTGCCTTCCTTCTGTGCGGACACTTTCAGTCATT
CCTATGGTCACTGAATCCACCCCACGGGGGGAGAGAATCACGGACATCTA
CTCCCGCTTGTTAAAGGAAAGGATCATCATGTGCCATGGCCCTGTGACGG
AGCCCATGGCCTCGTTGATTACGGCTCAGCTCCTTTTTTTGGAGGCGGAA
AATCCTGACAAGCCCTGCTACATGTATATCAACTCACCCGGGGGCATCGT
GACGGCAGGGCTGGCGATCTACGACACAATGCAGTACATCCGCCCGCCCG
TGGCCACCATATGCATGGGCCAGGCCTCATCCATGGGCTCCTTGCTATTA
ACGGCCGGCGAGCCCGGCATGCGCATGGCCCTTCCCAATTCCAAAATCAT
GCTCCATCAGCCCCGAGGTGGCGCTGAAGGCATGGCATCGGACATTGATA
TCATGGCTCGCGAAATCCTCAAGACGAGGGAGAGGCTGAATGCCCTTTAC
GTCCAGCACACCGGCCAGGTATCACCACCCTTCCCTCCCTCCCTCCCTCC
CTTCTCCCCTTCCCCTCTCCCTCTATTTTTTGTCTACTCCTCCCCTCCTA
TCTGTTGTCTTTCATTTCTCACGCAGCCATTGACTCGCATCCGTTTCCTC
GCCTCCCTCCTCCTCCTTCCCTCTCCTTCTCCTTCCCTTCCTCCCTCGCT
CCCTCCCTTCCTCGCCTGTCCACAGGCGCTGGATGCAATTGAGAAGGTGA
TGGACCGGGACACATTTTTTGATCCGACTCAGGCGGTGGAGTTCGGTGTC
GTGGATACCATCCTTACCAAGCGGACCGCCGCCGCCGTGGTCGAGGCGGG
TGGGAAGTGAGGGAATAAGAGACGAACAGCAAAGGTGAGAAGCGAGGGAG
AATTATGAAGGGTAGGGACAGGCGGAGCATGTACATAAAAGGATGAAGGA
GGCGAGGGAGAGGGGGGGTGATGGATGGACGAGCCCTCGCAGCCTGTATA
CATAGATATATTAGAAAAGCGAGATGAAGGAAGATAGGAAATAAAGCAGA
ATCACGGTGCTGCTGATCTTTACGG
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protein sequence of NO22G00310.3

>NO22G00310.3-protein ID=NO22G00310.3-protein|Name=NO22G00310.3|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MLKTLLRRQARTVSMTPRAPFLPSSPTTTSFPLACLPSVRTLSVIPMVTE
STPRGERITDIYSRLLKERIIMCHGPVTEPMASLITAQLLFLEAENPDKP
CYMYINSPGGIVTAGLAIYDTMQYIRPPVATICMGQASSMGSLLLTAGEP
GMRMALPNSKIMLHQPRGGAEGMASDIDIMAREILKTRERLNALYVQHTG
QVSPPFPPSLPPFSPSPLPLFFVYSSPPICCLSFLTQPLTRIRFLASLLL
LPSPSPSLPPSLPPFLACPQALDAIEKVMDRDTFFDPTQAVEFGVVDTIL
TKRTAAAVVEAGGK*
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mRNA from alignment at chr22:114871..116809+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00310.3 ID=NO22G00310.3|Name=NO22G00310.3|organism=Nannochloropsis oceanica|type=mRNA|length=1939bp|location=Sequence derived from alignment at chr22:114871..116809+ (Nannochloropsis oceanica)
ACCACAGACGCCAAAATGTTGAAGACTTTATTGCGGCGGCAGGCCCGAAC
CGTAAGCATGACTCCCCGTGCTCCCTTCTTGCCCTCCTCCCCTACTACAA
CCTCCTTCCCCCTTGCCTGCCTTCCTTCTGTGCGGACACTTTCAGTCATT
CCTATGGTCACTGAATCCACCCCACGGGGGGAGAGAATCACGGACATCTA
CTCCCGCTTGTTAAAGGAAAGGATCATCATGTGCCATGGCCCTGTGACGG
AGGTGAGGAGAGGCTGGGGAGAAAAGGAGGGAGTACTGACAAGACGAGGA
CGATGAGGCTGGTTGGAGCAAGGTCTAACTTTATTACGTGCATGCTGCAT
GACAGACAGATGTATACTTACGTGGGGCTTTGTTCACAAACCCATGTTCG
GAACACCCCTTTAACTAGACCCCTTGTCTCCTCCCCATCCTGTCCTCCTT
CCCTGCTGTTCTATCCCTTACCCCCAGCCCATGGCCTCGTTGATTACGGC
TCAGCTCCTTTTTTTGGAGGCGGAAAATCCTGACAAGCCCTGCTACATGT
ATATCAACTCACCCGGGGGCATCGTGACGGCAGGGCTGGCGATCTACGAC
ACAATGCAGTACATCCGCCCGCCCGTGGCCACCATATGCATGGGCCAGGT
GGGGAGGGAGGGAGGGATGGAGGGAGAGGAGGAGGACGGGACAGTTCGCA
AGACAATGCATGCACAGCACTCCAGTCATTTCTTCCCCCCCCATCCTTCG
TTCCCTGTCTTTGTTCCCCCTCTTTTCGCAGGCCTCATCCATGGGCTCCT
TGCTATTAACGGCCGGCGAGCCCGGCATGCGCATGGCCCTTCCCAATTCC
AAAATCATGCTCCATCAGGTAATCCCTCCCTCCCTCCCTCCCTTCCTCCC
TCCCTCCCTCCTTCCCTCCCTCCCTTTACTTTCTTAAACTCCTCCCCCTC
TCTGTTTTTCTGTGTACATACCTATATCCATCTCCCTCTTGCCCCTTGCC
TTGCCTCCCGTTCGATCCGACTGCTGTCATGCCAGTGTGGTTGGGCAGAT
TTATTAAACCCTCCTAACCCCCCTCCCTACCCCTCCTGCGCCTCTTCCAT
CAGCCCCGAGGTGGCGCTGAAGGCATGGCATCGGACATTGATATCATGGC
TCGCGAAATCCTCAAGACGAGGGAGAGGCTGAATGCCCTTTACGTCCAGC
ACACCGGCCAGGTATCACCACCCTTCCCTCCCTCCCTCCCTCCCTTCTCC
CCTTCCCCTCTCCCTCTATTTTTTGTCTACTCCTCCCCTCCTATCTGTTG
TCTTTCATTTCTCACGCAGCCATTGACTCGCATCCGTTTCCTCGCCTCCC
TCCTCCTCCTTCCCTCTCCTTCTCCTTCCCTTCCTCCCTCGCTCCCTCCC
TTCCTCGCCTGTCCACAGGCGCTGGATGCAATTGAGAAGGTAAGAGCAAG
GGAAATGGCAGGCAGGGAGGAGGGGAAGGAGGAAGGGAAGGAGGAAGGGA
AGGAAGTGAGACAGGCGGCATAGGAAGAACGTGAGTACACATGATCTCAT
CCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCC
TTGAGAGTAGGTGATGGACCGGGACACATTTTTTGATCCGACTCAGGCGG
TGGAGTTCGGTGTCGTGGATACCATCCTTACCAAGCGGACCGCCGCCGCC
GTGGTCGAGGCGGGTGGGAAGTGAGGGAATAAGAGACGAACAGCAAAGGT
GAGAAGCGAGGGAGAATTATGAAGGGTAGGGACAGGCGGAGCATGTACAT
AAAAGGATGAAGGAGGCGAGGGAGAGGGGGGGTGATGGATGGACGAGCCC
TCGCAGCCTGTATACATAGATATATTAGAAAAGCGAGATGAAGGAAGATA
GGAAATAAAGCAGAATCACGGTGCTGCTGATCTTTACGG
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Coding sequence (CDS) from alignment at chr22:114871..116809+

>NO22G00310.3 ID=NO22G00310.3|Name=NO22G00310.3|organism=Nannochloropsis oceanica|type=CDS|length=945bp|location=Sequence derived from alignment at chr22:114871..116809+ (Nannochloropsis oceanica)
ATGTTGAAGACTTTATTGCGGCGGCAGGCCCGAACCGTAAGCATGACTCC
CCGTGCTCCCTTCTTGCCCTCCTCCCCTACTACAACCTCCTTCCCCCTTG
CCTGCCTTCCTTCTGTGCGGACACTTTCAGTCATTCCTATGGTCACTGAA
TCCACCCCACGGGGGGAGAGAATCACGGACATCTACTCCCGCTTGTTAAA
GGAAAGGATCATCATGTGCCATGGCCCTGTGACGGAGCCCATGGCCTCGT
TGATTACGGCTCAGCTCCTTTTTTTGGAGGCGGAAAATCCTGACAAGCCC
TGCTACATGTATATCAACTCACCCGGGGGCATCGTGACGGCAGGGCTGGC
GATCTACGACACAATGCAGTACATCCGCCCGCCCGTGGCCACCATATGCA
TGGGCCAGGCCTCATCCATGGGCTCCTTGCTATTAACGGCCGGCGAGCCC
GGCATGCGCATGGCCCTTCCCAATTCCAAAATCATGCTCCATCAGCCCCG
AGGTGGCGCTGAAGGCATGGCATCGGACATTGATATCATGGCTCGCGAAA
TCCTCAAGACGAGGGAGAGGCTGAATGCCCTTTACGTCCAGCACACCGGC
CAGGTATCACCACCCTTCCCTCCCTCCCTCCCTCCCTTCTCCCCTTCCCC
TCTCCCTCTATTTTTTGTCTACTCCTCCCCTCCTATCTGTTGTCTTTCAT
TTCTCACGCAGCCATTGACTCGCATCCGTTTCCTCGCCTCCCTCCTCCTC
CTTCCCTCTCCTTCTCCTTCCCTTCCTCCCTCGCTCCCTCCCTTCCTCGC
CTGTCCACAGGCGCTGGATGCAATTGAGAAGGTGATGGACCGGGACACAT
TTTTTGATCCGACTCAGGCGGTGGAGTTCGGTGTCGTGGATACCATCCTT
ACCAAGCGGACCGCCGCCGCCGTGGTCGAGGCGGGTGGGAAGTGA
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Synonyms
Publications