NO22G00230.1, NO22G00230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00230.1
Unique NameNO22G00230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length348
Alignment locationchr22:87984..88455 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:87984..88455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO22G00230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00230NO22G00230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00230.1NO22G00230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00230.1.cds1NO22G00230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00230.1.cds2NO22G00230.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00230.1 ID=NO22G00230.1|Name=NO22G00230.1|organism=Nannochloropsis oceanica|type=mRNA|length=348bp
ATGCAGGTCCCCTTCAGTATCACTGCCGTCCTACTCTCTTTCCTCGTTAT
CGTCTCCGCGCAGCAGCGTCTGTCATTGCGTGTCCGGACCCTGGCGGCTG
TAGAGGAGGACAAGCAAAGCGCATATGGCCAACTCAGCAGCGGGGATCCG
ACGGGGGGGAATGGCCGTAGCGACGGTGAGGGCGACTGGACAGCCCTACT
AATTCCACTCGACAAGCCGGCAGAGATCGAAAAGAACGGGAAGCAGAGCA
TCAACGAAATGCTAAGCAACGGTGGCCGACGAACCTGGCATGGAGGCTGG
AATGGATGGGGGTGGACCAAAGGTATGATTATGAAAGCTGACTCTTGA
back to top

protein sequence of NO22G00230.1

>NO22G00230.1-protein ID=NO22G00230.1-protein|Name=NO22G00230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=116bp
MQVPFSITAVLLSFLVIVSAQQRLSLRVRTLAAVEEDKQSAYGQLSSGDP
TGGNGRSDGEGDWTALLIPLDKPAEIEKNGKQSINEMLSNGGRRTWHGGW
NGWGWTKGMIMKADS*
back to top

mRNA from alignment at chr22:87984..88455-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00230.1 ID=NO22G00230.1|Name=NO22G00230.1|organism=Nannochloropsis oceanica|type=mRNA|length=472bp|location=Sequence derived from alignment at chr22:87984..88455- (Nannochloropsis oceanica)
ATGCAGGTCCCCTTCAGTATCACTGCCGTCCTACTCTCTTTCCTCGTTAT
CGTCTCCGCGCAGCAGCGTCTGTCATTGCGTGTCCGGACCCTGGCGGCTG
TAGAGGAGGACAAGCAAAGCGCATATGGCCAACTCAGCAGCGGGGATCCG
ACGGGGGGGAATGGCCGTAGCGACGGTGAGGGCGACTGGACAGGTAAAAA
TCAAGGGAAAGGCAGCATAAACGTAGGTCTTGGTATGGTAGAAATTATTT
TTGACCCTTTTTCCTTCCCTTCCTTTTTCCTTCCCTTCCTCTTTCCCTCC
AACCCCCTCTGTTTCAGCCCTACTAATTCCACTCGACAAGCCGGCAGAGA
TCGAAAAGAACGGGAAGCAGAGCATCAACGAAATGCTAAGCAACGGTGGC
CGACGAACCTGGCATGGAGGCTGGAATGGATGGGGGTGGACCAAAGGTAT
GATTATGAAAGCTGACTCTTGA
back to top

Coding sequence (CDS) from alignment at chr22:87984..88455-

>NO22G00230.1 ID=NO22G00230.1|Name=NO22G00230.1|organism=Nannochloropsis oceanica|type=CDS|length=348bp|location=Sequence derived from alignment at chr22:87984..88455- (Nannochloropsis oceanica)
ATGCAGGTCCCCTTCAGTATCACTGCCGTCCTACTCTCTTTCCTCGTTAT
CGTCTCCGCGCAGCAGCGTCTGTCATTGCGTGTCCGGACCCTGGCGGCTG
TAGAGGAGGACAAGCAAAGCGCATATGGCCAACTCAGCAGCGGGGATCCG
ACGGGGGGGAATGGCCGTAGCGACGGTGAGGGCGACTGGACAGCCCTACT
AATTCCACTCGACAAGCCGGCAGAGATCGAAAAGAACGGGAAGCAGAGCA
TCAACGAAATGCTAAGCAACGGTGGCCGACGAACCTGGCATGGAGGCTGG
AATGGATGGGGGTGGACCAAAGGTATGATTATGAAAGCTGACTCTTGA
back to top
Synonyms
Publications