NO22G00220.1, NO22G00220.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO22G00220.1
Unique Name	NO22G00220.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	921
Alignment location	chr22:86955..87875 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr22	genome	chr22:86955..87875 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO22G00220.1 vs.

BLAST of NO22G00220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO22G00220	NO22G00220	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO22G00220.1	NO22G00220.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO22G00220.1.cds1	NO22G00220.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr22:86955..87875-
coding sequence from alignment at chr22:86955..87875-

mRNA sequence

>NO22G00220.1 ID=NO22G00220.1|Name=NO22G00220.1|organism=Nannochloropsis oceanica|type=mRNA|length=921bp
ATGATTATTATTATTACTATTATTATTACCATTATTATTATTATTACTAT
TACTATTACTATTATTATTATTATTATTATTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGA
AGTAGTAGTAGTAGTAGTATTATAATTATTATTATAATTATTATTATAAT
TATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTTGTTGTAGTAGTT
GTAGTAGTTGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGAAGTAGTAGTAGTAGTAGTATTATAATTATTAT
TATAATTATTATTATAATTATTATTATTAGTAGTAGTAGTAGTTGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTACTATTAGTAGTATT
ATTAATATTAATATTAATATTATTATTATTATTATTATTATTACTATTAT
TAGTAGTATTATTAGTAGTATTATTTATATTATTATTATTATTATTATTA
GTAGTAGTAGTAGTAGTAGTAGTAGTTGTTGTTGTTGTTGTTGTTGTAGT
TGTAGTAGTATTATTAGTAGTATTATTAGTAGTATTATTAGTATTATTAG
TATTATTAGTATTATTATCACCACCTCCTGTGTCCTCACCTTCCCTCCTT
CCCTCTTTTTAATAGACGTAGGCGACCTGGTGGGCGAGACTGGAAATCAA
GCTGCAGCAGCGACGACAGCCACGATGGAAGCCACGGCAGCTACAGCAGC
GACAGCGGCAACAGCGGTCACAGCAGCGACAGCAGCGACGACAGCGACGG
TGGAAACAACAGCAGCAACGGTGAAAGCGACGGTGGAAGAGCCAGGGCAT
CGCGTTCTGCATGGCGTCTAG

protein sequence of NO22G00220.1

>NO22G00220.1-protein ID=NO22G00220.1-protein|Name=NO22G00220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MIIIITIIITIIIIITITITIIIIIIISSSSSSSSSSSSSSSSSSSSSSR
SSSSSSIIIIIIIIIIIIIIISSSSSSSSCCSSCSSCSSSSSSSSSSSSS
SSSSSRSSSSSSIIIIIIIIIIIIIISSSSSCSSSSSSSSSSSSSTISSI
INININIIIIIIIITIISSIISSIIYIIIIIIISSSSSSSSSCCCCCCCS
CSSIISSIISSIISIISIISIIITTSCVLTFPPSLFLIDVGDLVGETGNQ
AAAATTATMEATAATAATAATAVTAATAATTATVETTAATVKATVEEPGH
RVLHGV*

mRNA from alignment at chr22:86955..87875-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO22G00220.1 ID=NO22G00220.1|Name=NO22G00220.1|organism=Nannochloropsis oceanica|type=mRNA|length=921bp|location=Sequence derived from alignment at chr22:86955..87875- (Nannochloropsis oceanica)
ATGATTATTATTATTACTATTATTATTACCATTATTATTATTATTACTAT
TACTATTACTATTATTATTATTATTATTATTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGA
AGTAGTAGTAGTAGTAGTATTATAATTATTATTATAATTATTATTATAAT
TATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTTGTTGTAGTAGTT
GTAGTAGTTGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGAAGTAGTAGTAGTAGTAGTATTATAATTATTAT
TATAATTATTATTATAATTATTATTATTAGTAGTAGTAGTAGTTGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTACTATTAGTAGTATT
ATTAATATTAATATTAATATTATTATTATTATTATTATTATTACTATTAT
TAGTAGTATTATTAGTAGTATTATTTATATTATTATTATTATTATTATTA
GTAGTAGTAGTAGTAGTAGTAGTAGTTGTTGTTGTTGTTGTTGTTGTAGT
TGTAGTAGTATTATTAGTAGTATTATTAGTAGTATTATTAGTATTATTAG
TATTATTAGTATTATTATCACCACCTCCTGTGTCCTCACCTTCCCTCCTT
CCCTCTTTTTAATAGACGTAGGCGACCTGGTGGGCGAGACTGGAAATCAA
GCTGCAGCAGCGACGACAGCCACGATGGAAGCCACGGCAGCTACAGCAGC
GACAGCGGCAACAGCGGTCACAGCAGCGACAGCAGCGACGACAGCGACGG
TGGAAACAACAGCAGCAACGGTGAAAGCGACGGTGGAAGAGCCAGGGCAT
CGCGTTCTGCATGGCGTCTAG

Coding sequence (CDS) from alignment at chr22:86955..87875-

>NO22G00220.1 ID=NO22G00220.1|Name=NO22G00220.1|organism=Nannochloropsis oceanica|type=CDS|length=921bp|location=Sequence derived from alignment at chr22:86955..87875- (Nannochloropsis oceanica)
ATGATTATTATTATTACTATTATTATTACCATTATTATTATTATTACTAT
TACTATTACTATTATTATTATTATTATTATTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGA
AGTAGTAGTAGTAGTAGTATTATAATTATTATTATAATTATTATTATAAT
TATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTTGTTGTAGTAGTT
GTAGTAGTTGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGAAGTAGTAGTAGTAGTAGTATTATAATTATTAT
TATAATTATTATTATAATTATTATTATTAGTAGTAGTAGTAGTTGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTACTATTAGTAGTATT
ATTAATATTAATATTAATATTATTATTATTATTATTATTATTACTATTAT
TAGTAGTATTATTAGTAGTATTATTTATATTATTATTATTATTATTATTA
GTAGTAGTAGTAGTAGTAGTAGTAGTTGTTGTTGTTGTTGTTGTTGTAGT
TGTAGTAGTATTATTAGTAGTATTATTAGTAGTATTATTAGTATTATTAG
TATTATTAGTATTATTATCACCACCTCCTGTGTCCTCACCTTCCCTCCTT
CCCTCTTTTTAATAGACGTAGGCGACCTGGTGGGCGAGACTGGAAATCAA
GCTGCAGCAGCGACGACAGCCACGATGGAAGCCACGGCAGCTACAGCAGC
GACAGCGGCAACAGCGGTCACAGCAGCGACAGCAGCGACGACAGCGACGG
TGGAAACAACAGCAGCAACGGTGAAAGCGACGGTGGAAGAGCCAGGGCAT
CGCGTTCTGCATGGCGTCTAG

Synonyms

Publications