NO22G00070.1, NO22G00070.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO22G00070.1
Unique Name	NO22G00070.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2037
Alignment location	chr22:27817..31836 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr22	genome	chr22:27817..31836 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO22G00070.1 vs.
Match: XP_011404609.2 (PREDICTED: pectin acetylesterase 8-like [Amphimedon queenslandica])

HSP 1 Score: 226.1 bits (575), Expect = 2.000e-55
Identity = 133/358 (37.15%), Postives = 195/358 (54.47%), Query Frame = 0

Query:   41 LNDSTGMAKCLDGSPMAYYYRPGTGTGKNKWLLSYEGGGWCSSLKDCELRTSGPLGSSNDYKPTTQLVLGKLSNSADRNPSFYNWNIVFVRYCDGGYFSGDVSEPVIYMDKPLYFRGAYIHRALLEDLMDQMDMAEATDVVISGCSAGAVQTYINIDKIRSLLPDKMRVTGLPDSGFLV-AYDGEGACNYQKSMIDTFSLMNVSSSIPQGCLDKFDSTDQ-WRCMFFAQHLIPFIETPMFIVQSKHDEWQMDN--NIYCEQYN--TEASRNFGSYFEEVFNAT--INLFPYSGYLLDSCKHHC-----GGWDYVVSDDGHTQHEAFDRWYAAIYNDGNFTQSNHQHKQAGTYPCISCC 386
            L+DS G A CLDGSP  YYYRPG G   N W+L  EGGGWC +  +C  R+ G LGSS ++  TT    G LS+  + NP FY WN+VF++YCDG  F+G V+EPV      +YFRG  I + +L+ +MD+  M+ A +V+++GCSAG + TYI+ + ++SLL   ++   + D+G+ + A D  G    +    D F++ N S  + Q C+  +  T++ W+C F AQ+  P I +P+F   S+ D WQ+     + C+  N   E  + F +++EE   A+  I     +G  LDSC  HC      GW  V S    T    F  WY        F +S  ++    +YPC   C
Sbjct:   36 LHDS-GEAVCLDGSPPGYYYRPGVGADANNWILHLEGGGWCPNEDNCLDRSKGTLGSSKNWTQTTSF-SGFLSDEQEYNPDFYQWNVVFLKYCDGASFAGYVAEPVNVKGTNIYFRGFKILQLILQSVMDK-GMSNAKEVILTGCSAGGLATYIHTNYVKSLLSPTVKFHAIADAGYFIDAPDVNGEWYIRTFYSDVFNMQNCSDGVNQDCIAAYKGTNETWKC-FMAQYTYPHISSPIFSFNSQVDTWQLVAILKLECKPPNCTEEQMKQFFNFYEEFKKASEPIVSSTVNGAFLDSCLAHCQTLDNQGW-AVRSVQNQTGATTFGNWY--------FERSGLKNIADCSYPCNKSC 380

The following BLAST results are available for this feature:

BLAST of NO22G00070.1 vs.

BLAST of NO22G00070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_011404609.2	2.000e-55	37.15	PREDICTED: pectin acetylesterase 8-like [Amphimedo...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO22G00070	NO22G00070	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO22G00070.1	NO22G00070.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO22G00070.1.cds1	NO22G00070.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00070.1.cds2	NO22G00070.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00070.1.cds3	NO22G00070.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00070.1.cds4	NO22G00070.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00070.1.cds5	NO22G00070.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00070.1.cds6	NO22G00070.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00070.1.cds7	NO22G00070.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00070.1.cds8	NO22G00070.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00070.1.cds9	NO22G00070.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00070.1.cds10	NO22G00070.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00070.1.cds11	NO22G00070.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00070.1.cds12	NO22G00070.1.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00070.1.cds13	NO22G00070.1.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr22:27817..31836+
coding sequence from alignment at chr22:27817..31836+

mRNA sequence

>NO22G00070.1 ID=NO22G00070.1|Name=NO22G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2037bp
GACATATCAAGACATGTGCGTGACCTCGGTCTGTGACGCTTGTCACTCCC
GCACTTTTACCATAATATGTACTTTGTGTTGTGTAGAAAGGGATGTTGTG
ACAGGTTTGTAGATCTAAGGCGAGGAATGTGAATTGAAGGCTCAGACACA
CTCTCCCTCCTCTTTTCATAGCCGAACACCAATATTGCGTCAAATTCCCC
AACTTACGTCACGGAACTCGCCGCATCTAAACGCACTAATTCGATTGCCC
ATCATAGGACGCTAGGGCCCACGCCGAGCTGCACGGCACAGGGTTGTAAT
ACTCTGTCTTTCGCGTTGGTCGTCTCCTTCATCACCCTCGGCCCTCCTCC
AATTGCTATTGATGGCCTCCCACTTCTCCGTCCGCCTAATCAATGGTCTG
CTTCTCCCCTCACTTATAGGGTTCATAGCCCTGCCTACGTCTGTCTTCGG
CCAAACTGCAGGCGCTGGCTATCTTCATAAACTCAATGACTCGACGGGCA
TGGCTAAATGTTTAGATGGCAGCCCCATGGCTTACTATTACCGCCCGGGC
ACGGGGACCGGCAAGAACAAGTGGCTCTTGTCTTACGAAGGTGGCGGGTG
GTGCTCTTCATTGAAAGACTGCGAGTTGCGGACCAGCGGGCCTTTGGGGA
GCAGCAATGATTACAAGCCCACAACGCAACTAGTACTCGGCAAGCTATCC
AACAGCGCAGATCGTAACCCTTCCTTTTACAACTGGAACATCGTTTTTGT
CCGCTACTGTGATGGAGGATACTTTTCCGGCGATGTGTCAGAACCTGTCA
TCTACATGGACAAGCCCCTCTACTTTCGCGGGGCGTACATCCACAGAGCT
CTCTTGGAGGACCTCATGGATCAGATGGACATGGCGGAGGCGACGGACGT
GGTGATCAGCGGATGCTCGGCTGGGGCAGTGCAGACATATATTAACATAG
ACAAGATACGATCCTTGCTGCCCGACAAGATGCGCGTTACGGGGCTTCCA
GATAGTGGTTTCCTGGTGGCCTACGATGGAGAGGGTGCTTGCAATTATCA
AAAGTCCATGATCGACACATTCTCTTTGATGAATGTCTCCTCTTCCATTC
CGCAAGGATGCCTGGACAAGTTCGATTCCACCGACCAATGGCGATGCATG
TTTTTTGCCCAGCACCTGATTCCGTTCATCGAGACGCCCATGTTCATTGT
ACAGTCCAAGCACGACGAGTGGCAGATGGACAACAACATCTACTGCGAGC
AGTACAACACTGAAGCGTCCAGAAATTTTGGCAGCTACTTCGAAGAAGTC
TTCAACGCGACTATCAATTTGTTCCCCTATAGCGGATACTTATTGGACTC
TTGCAAACACCACTGTGGCGGTTGGGATTATGTCGTATCAGACGATGGAC
ATACGCAGCACGAGGCATTTGACCGGTGGTATGCCGCCATATATAACGAC
GGCAATTTTACTCAATCCAATCATCAGCATAAACAAGCTGGAACGTACCC
GTGCATTTCCTGCTGCGTGCAAGGAAACCACTACTCTTCCTACTTCGCCG
AATCAGTCATCTCACGAGCGTCGCCTAGCATCCCTCGACGACGCCTCCGT
GTCTATAGCTGAGATGTGCAAGGACGCGCACGAGACGATAAGGAGCTCCA
ATCCGAGACACTTTGGTGAATTTGGGTCTTTCACTGTCTAGATCTGTTAT
AAATGCGGAAGAGCAGTCGTTCGAGTTTGCTGCTGCGGATGAAGCTTCGT
CGGCAGAAGTTCCATGGGAAGGAGGACATGGAAAGGAAAGTTGGGGAAAC
AACGAGGGTCAAAGAGGTGTTTTGGGGTCTCGCATATGGCGCTGGGTAGA
GGCAAACTTTTTTTAAACTACTCTTGAGGGGATAGCGAGTTCTTGTGATT
CATGGTATAGGGGGTAGAATCAGCCCAGCAGCGGATAGCATGATATGCTT
TTGGGTGGCGTGTGCACGCTCAGGCATTTTTTTTTTTAATAATAGGGAGC
TAAAGTTCAAATAGTGAACTTATAAAAAGACTATTTA

protein sequence of NO22G00070.1

>NO22G00070.1-protein ID=NO22G00070.1-protein|Name=NO22G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp
MASHFSVRLINGLLLPSLIGFIALPTSVFGQTAGAGYLHKLNDSTGMAKC
LDGSPMAYYYRPGTGTGKNKWLLSYEGGGWCSSLKDCELRTSGPLGSSND
YKPTTQLVLGKLSNSADRNPSFYNWNIVFVRYCDGGYFSGDVSEPVIYMD
KPLYFRGAYIHRALLEDLMDQMDMAEATDVVISGCSAGAVQTYINIDKIR
SLLPDKMRVTGLPDSGFLVAYDGEGACNYQKSMIDTFSLMNVSSSIPQGC
LDKFDSTDQWRCMFFAQHLIPFIETPMFIVQSKHDEWQMDNNIYCEQYNT
EASRNFGSYFEEVFNATINLFPYSGYLLDSCKHHCGGWDYVVSDDGHTQH
EAFDRWYAAIYNDGNFTQSNHQHKQAGTYPCISCCVQGNHYSSYFAESVI
SRASPSIPRRRLRVYS*

mRNA from alignment at chr22:27817..31836+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO22G00070.1 ID=NO22G00070.1|Name=NO22G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=4020bp|location=Sequence derived from alignment at chr22:27817..31836+ (Nannochloropsis oceanica)
GACATATCAAGACATGTGCGTGACCTCGGTCTGTGACGCTTGTCACTCCC
GCACTTTTACCATAATATGTACTTTGTGTTGTGTAGAAAGGGATGTTGTG
ACAGGTTTGTAGATCTAAGGCGAGGAATGTGAATTGAAGGCTCAGACACA
CTCTCCCTCCTCTTTTCATAGCCGAACACCAATATTGCGTCAAATTCCCC
AACTTACGTCACGGAACTCGCCGCATCTAAACGCACTAATTCGATTGCCC
ATCATGTACGTGTACGCGTCATATCGCTCCGCATTGGTTAAGCACTACTC
ATTTTTATCGACTGTTTGAAAGTCATACTGCCAGCGCTTCAGATCTGGAC
AAGTTCTCGCATGTACACGACTGGCCCATCTCACTCCTTCCCTCCATCGC
CCTTCCGCAGAGGACGCTAGGGCCCACGCCGAGCTGCACGGCACAGGGTT
GTAATACTCTGTCTTTCGCGTTGGTCGTCTCCTTCATCACCCTCGGCCCT
CCTCCAATTGCTATTGATGGGTAAGTATTTGTAGTGGAGAGCACGTACGC
TTGCCCTGCCGCCTGTTCCTCAATCCTCTGCTTATTGCCGCTCCTACACA
TCCACAGCCTCCCACTTCTCCGTCCGCCTAATCAATGGTCTGCTTCTCCC
CTCACTTATAGGGTTCATAGCCCTGCCTACGTCTGGTACGTACATCTCTG
GAGCTTGAATTAGTGCGAGTATAATTTCTTAGTCTTACACGTGCAACCCT
TCCTCCTTCCTTCTCTCCCTCCCTTTCGCTCTCCCTCAATCCAGTCTTCG
GCCAAACTGCAGGCGCTGGCTATCTTCATAAACTCAATGACTCGACGGGC
ATGGCTAAATGTTTAGATGGCAGCCCCATGGCTTACTATTACCGCCCGGG
CACGGGGACCGGCAAGAACAAGTGGCTCTTGTCTTACGAAGGTACAGCGG
GAAAAAGGAGAGAAGGAGGAAAAGCGGGAAGAAGGGCGGGATAATGCAAG
ACGCATTCAAGTATAGCAAATTCGATCAAACTATCAGTGCATGATATGAA
AGAGTTGTATACGAAAGAAGGGGGAGGGAGGGCTAAAGGAGGAAAGGTTG
CGGGTGTACTGGTTTCCCGGGAGGGGATTCCACCATGCCCATTTCCTTGG
ATGTGGAACTCATGCCACGACACAGCTCCCTCCTATTTTTCTCGTTTCAA
TTTCTCACATGTCTTTCTTATTAATTTTCCCTCTAGGTGGCGGGTGGTGC
TCTTCATTGAAAGACTGCGAGTTGCGGACCAGCGGGCCTTTGGGGAGCAG
CAATGATTACAAGCCCACAACGCAACTAGTACTCGGTAGGGAGGGGGGAG
GGGAAGAGGGAATGAAAATGGGAGGATACCTTAGAGACAACAGGGTTGAG
ATAAGCACGGAAAGGAGGGAGGAAGAGGAGAGATAGACAGAGCATCAACG
AACTCCCTTTCGATTTTTCATTTCCCATCCCAATCAAAGGCAAGCTATCC
AACAGCGCAGATCGTAACCCTTCCTTTTACAACTGGAACATCGGTACGTC
CCCGTCTACGAAAATGATTTGTTCCTCCATGCATGCGTCTTCCCTGCTTT
TCGTGTGCAAGCATTTTCTTTCATCCTTATTCGTTTTGATCCCCGCTCAA
TACCTGCGTCCCCATCTCCTTCTCTTCCATCCCTCTCTCCATCCCTCCCT
CCCTAAAAGTTTTTGTCCGCTACTGTGATGGAGGATACTTTTCCGGCGAT
GTGTCAGAACCTGTCATCTACATGGACAAGCCCCTCTACTTTCGCGGGGC
GTACATCCACAGGTGAGGAAAGGAGAGGGGGGAAGGAAGGGAAAGCGGGA
GAGATGATGGAGGAAGGAGGTGGAACGGAATCGTCATCTTATGCCTTCCT
TCCTCACTGGAAATTTGGTCCATATAAATAGGAATGGTCCATTAATATGT
AGAGAAATTGCAGCGAGACAAGCACTTACTTCCACATACCATCCTAACCT
TCCTTCTTCCGCTCTTCCCGACCTCTTTCCCTCTTTTCCAGAGCTCTCTT
GGAGGACCTCATGGATCAGATGGACATGGCGGAGGCGACGGACGTGGTGA
TCAGCGGATGCTCGGCTGGGGCAGTGCAGACATATATTAACATAGGTGCG
AATCGAAAGTGTTCCGTTGCTCTTTTAAACCTCTCTCTCATGTTCCTTTC
CATCACTTCCTCATTCCATACATTCAACAAACCAGACAAGATACGATCCT
TGCTGCCCGACAAGATGCGCGTTACGGGGCTTCCAGATAGTGGTTTCCTG
GTGGCCTACGATGGAGAGGGTAAGAAAACAAATGGGCCAATTCAGAAGAA
GAGGGAGGGCTGGTGCGCTCTGTGCCAAAAACAGAATTTACATAATGTAT
TTTCTGCATCGCCGTTTTTGTCATTTCTTGACCTTTTCTGTTCACAGGTG
CTTGCAATTATCAAAAGTCCATGATCGACACATTCTCTTTGATGAATGTC
TCCTCTTCCATTCCGCAAGGATGCCTGGACAAGTTCGATTCCACCGGTAC
GTAGCTGGTCCTCCTTCTCCCCTCTTTCAGTCTGTATTTGCACTGCCATG
GGTGTGTGCACGTACGAGCCAAACCATTCATATCCACGTCACTCAAACCT
AAGCTCTCAAGCCTAAGCTCATTATTCTAAGCGCTATCTCCTCACCTCTC
CTCTAAAAGACCAATGGCGATGCATGTTTTTTGCCCAGCACCTGATTCCG
TTCATCGAGACGCCCATGTTCATTGTACAGTCCAAGCACGACGAGTGGCA
GATGGACAACAACATCTACTGCGAGCAGTACAACACTGAAGCGTCCAGGT
ACGGAGAAAAGAGAAATGGAAGACAAGGCGTACTTAAGATGCTCTTCAGA
ATATTTTGATCTTTCCAACGCGAATCCATAGACTAAATTCTCATTCTACG
CTTTCATCTTGCCCACTCTTGCAGAAATTTTGGCAGCTACTTCGAAGAAG
TCTTCAACGCGACTATCAATTTGTTCCCCTATAGCGGATACTTATTGGAC
TCTTGCAAACACCACTGTGGCGGTTGGGATTATGTCGTATCAGACGATGG
ACATACGCAGCACGAGGCATTTGACCGGGTGAGATATGTATATACATGTA
GAGAGAAGGCGTGGTGAAAACAAAGAATAGATGGAATGGTATAAAGGACA
TCATTTTCAATTGAAAGGGTTGGGAAAGACACGCGATTGATGATTTACCT
GTACCTCGTTCTAAATCACACCGCACAGTGGTATGCCGCCATATATAACG
ACGGCAATTTTACTCAATCCAATCATCAGCATAAACAAGCTGGAACGTAC
CCGTGCATTTCCTGCTGCGTGCAAGGTATATATTGGGGGGTGCGCTCACG
GGAAAACACACGGCAATGACTCGTTTCCTTCTTCGTACTAGCTCACTAAC
TCCTCTCTCTAGACTTACTTTTTTACTTCACTTTGCTCACATTCCAAAAC
CAATAGGAAACCACTACTCTTCCTACTTCGCCGAATCAGTCATCTCACGA
GCGTCGCCTAGCATCCCTCGACGACGCCTCCGTGTCTATAGCTGAGATGT
GCAAGGACGCGCACGAGACGATAAGGAGCTCCAATCCGAGACACTTTGGT
GAATTTGGGTCTTTCACTGTCTAGATCTGTTATAAATGCGGAAGAGCAGT
CGTTCGAGTTTGCTGCTGCGGATGAAGCTTCGTCGGCAGAAGTTCCATGG
GAAGGAGGACATGGAAAGGAAAGTTGGGGAAACAACGAGGGTCAAAGAGG
TGTTTTGGGGTCTCGCATATGGCGCTGGGTAGAGGCAAACTTTTTTTAAA
CTACTCTTGAGGGGATAGCGAGTTCTTGTGATTCATGGTATAGGGGGTAG
AATCAGCCCAGCAGCGGATAGCATGATATGCTTTTGGGTGGCGTGTGCAC
GCTCAGGCATTTTTTTTTTTAATAATAGGGAGCTAAAGTTCAAATAGTGA
ACTTATAAAAAGACTATTTA

Coding sequence (CDS) from alignment at chr22:27817..31836+

>NO22G00070.1 ID=NO22G00070.1|Name=NO22G00070.1|organism=Nannochloropsis oceanica|type=CDS|length=1251bp|location=Sequence derived from alignment at chr22:27817..31836+ (Nannochloropsis oceanica)
ATGGCCTCCCACTTCTCCGTCCGCCTAATCAATGGTCTGCTTCTCCCCTC
ACTTATAGGGTTCATAGCCCTGCCTACGTCTGTCTTCGGCCAAACTGCAG
GCGCTGGCTATCTTCATAAACTCAATGACTCGACGGGCATGGCTAAATGT
TTAGATGGCAGCCCCATGGCTTACTATTACCGCCCGGGCACGGGGACCGG
CAAGAACAAGTGGCTCTTGTCTTACGAAGGTGGCGGGTGGTGCTCTTCAT
TGAAAGACTGCGAGTTGCGGACCAGCGGGCCTTTGGGGAGCAGCAATGAT
TACAAGCCCACAACGCAACTAGTACTCGGCAAGCTATCCAACAGCGCAGA
TCGTAACCCTTCCTTTTACAACTGGAACATCGTTTTTGTCCGCTACTGTG
ATGGAGGATACTTTTCCGGCGATGTGTCAGAACCTGTCATCTACATGGAC
AAGCCCCTCTACTTTCGCGGGGCGTACATCCACAGAGCTCTCTTGGAGGA
CCTCATGGATCAGATGGACATGGCGGAGGCGACGGACGTGGTGATCAGCG
GATGCTCGGCTGGGGCAGTGCAGACATATATTAACATAGACAAGATACGA
TCCTTGCTGCCCGACAAGATGCGCGTTACGGGGCTTCCAGATAGTGGTTT
CCTGGTGGCCTACGATGGAGAGGGTGCTTGCAATTATCAAAAGTCCATGA
TCGACACATTCTCTTTGATGAATGTCTCCTCTTCCATTCCGCAAGGATGC
CTGGACAAGTTCGATTCCACCGACCAATGGCGATGCATGTTTTTTGCCCA
GCACCTGATTCCGTTCATCGAGACGCCCATGTTCATTGTACAGTCCAAGC
ACGACGAGTGGCAGATGGACAACAACATCTACTGCGAGCAGTACAACACT
GAAGCGTCCAGAAATTTTGGCAGCTACTTCGAAGAAGTCTTCAACGCGAC
TATCAATTTGTTCCCCTATAGCGGATACTTATTGGACTCTTGCAAACACC
ACTGTGGCGGTTGGGATTATGTCGTATCAGACGATGGACATACGCAGCAC
GAGGCATTTGACCGGTGGTATGCCGCCATATATAACGACGGCAATTTTAC
TCAATCCAATCATCAGCATAAACAAGCTGGAACGTACCCGTGCATTTCCT
GCTGCGTGCAAGGAAACCACTACTCTTCCTACTTCGCCGAATCAGTCATC
TCACGAGCGTCGCCTAGCATCCCTCGACGACGCCTCCGTGTCTATAGCTG
A

Synonyms

Publications