NO21G02690.1, NO21G02690.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO21G02690.1
Unique Name	NO21G02690.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2415
Alignment location	chr21:829649..832398 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr21	genome	chr21:829649..832398 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO21G02690.1 vs.

BLAST of NO21G02690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO21G02690	NO21G02690	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO21G02690.1	NO21G02690.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO21G02690.1.cds1	NO21G02690.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO21G02690.1.cds2	NO21G02690.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr21:829649..832398+
coding sequence from alignment at chr21:829649..832398+

mRNA sequence

>NO21G02690.1 ID=NO21G02690.1|Name=NO21G02690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2415bp
ATGGATAATCCCGGGCTCAATCATCACAAGTCGCAGTCGCTCGCTCAAGT
TCCCACAGCAACGGAGGAGGTCGACATGGCCGCCGCTGGCATCTGGAGCC
AGCAGCAGCACGCATCGCCAGGGAGCCAGGAACAGCAACGCCCATACATC
GCGACGGCGGCTGGTGCTGCTGTTGCGACAGAGAGAGTAGACACGACGAT
GCTGGCCATGGCCAGGGAGGAGGGGAACGTGGGCCAGGACGACGAAGAAG
TGCCCTTGGACGAGGGAGAACTGTGCATGCTGCGACAGCTGATGTGTGAG
ACCCCGACAGGGAGAGGGAGTGGAATTACGATATTGTCGACTCCCACAGA
CGAAACGGGCTTTACCATTCCATTCCAGGAGCATCTTTGCCAGCACTACC
AACAACGCTACACGCAGGAGCAGCAGCAAGAGCACTGGCAGCAACGGGAG
CAGGGGATCGACACTGCGCTGTTGGATGAGATGGAGGATGAGGTCAGCAC
GTTTTTCGCCCTCCTGGAAGAAGAGGAAGGCGAACCCTCGCTGCATCTCG
CCTCGTCCACTACTACAGGACCGCTTGGTGGCCCTCCTGCTGCTGCTACT
TCTGCGGCGGCGGCGGCAGCGGCTCCTACTACTGATGATGGTTTACAAAG
TCTCCCCTTGCAGCACCGGCGCCAGCAACAACATGAGCAGCACCGTCATC
AGCAGCAGCAAGAGATGCAGCAGCAGCAGCATTACGATGAGCGCAATTTC
GCTTTTCCCTTTGAGGAGGCCGACCACGAAGTATTTAGCCAAAGCCAACT
AGAGCACCAGCTGCAGAACCAGCCCCAGCATTACTACCAGCAACATGACT
GCCATGATACTTTATATCTGCCAGTTTTTGCTTCCCCGCGTAATGCCCCT
TGCGTTCTCACCGTTGCAGAAGAAGCTGCGTTGCCACCACCAGCAGCAGG
AACAGTAGGACACTCAAGGCATCCGTCATCAAGGGCAGCAAAAGCAGCCG
CAGAACCAAGACCAGCATCTGTGGAGGTAGCAGCAGCAGTTGAAACCCTA
TCCTCCCTCTTTACACCTTGGTCCGCAGCAGCCTTAGCTGCCGCCGCTGG
CTCTTCAAGCTTTTCTTCCACTTCCTCCCCTCCCTCCTCCGGTTCTTTCC
CTTCCCGTTCTCTCCCAACAAACAGTACTCCTTCCTTCTCTAAGCACAAC
ACCAGCTGCTGTTTCTCTCCTCCTCTCCTCTCTCCCCATCGATCCCATTC
GGCTCATCCTCCCGCCCTCAACCCCCCTAATCCTACCGGTCCTCCACGTC
CCACCGCCAGTCGTCATCCCATTCATCAACCGTCCCTTCTCCCCGTCGTC
ATCCGCATCCTTATTATCGACGAGAGCCTTGCTTGCCTCCGGACCACGGT
CACTTTCTTGCAATCCTCTTTGGCTGGGGCTGTTGCTGCTGCGGCTGCTG
CTACTGCTGCTACTGCTACTGCTACTGCTGCTAATGCTACTGCTACTACG
ACTACGACTACAACTGCTGTTTCTATTCCTAATGCTACTGCTTCTGGCGT
TTGCACCAATATCAACGCAGCAGCTGCCGCTTCTTTTTCACTACCATCGA
CACCGGAGTCAGCTTCAGCTGCAGCACCAACAGATAGAAGTCAGGGAGAA
AAGGAAGGCGAATCGCCCGCTCCACGAACAATAGCGAAAGCAGTGATAGC
GTCCCAATCCGGACAAGCAGCAGCAGAATCCTCACCACCACTGCCAAAAC
CAGCACTATTCCCATCGATCTTCCCCCACATCCATCGCCTACATTTTGTT
GTTGACGCGGCCCGGGACACGCTCATGGGTCTTGAGCATTTCTCCCGCCA
CGACCCCGACGTCGTCCTCCTCTCTCACACTTTACACATCCACACTCCAC
CATCAGCAGTGGTACTACCACCCGCAACAGAATCGGCTGCAGAGGAAGTA
GAAGCAACACATGGAGCAGCAGAAGGAGCAGCAACAGTAGCATCAGGAGC
ATCAGAGATGGCAAAAAGAATGAAACAGGAGTGGGGATACACAGGGGCGG
TCCTTCTGTTGGTGGGAAGAGAGGGGGAAATGGAAGAAGGCCAGAAGGAG
CAAGGAGTGAAGAGTAGAGGCAGACAGAGGGTGAAGTGTAGACGATTGGC
ACTGCCAGCTCCCTCGGTAGTCGATAGGAATAAGGAAAGCGAGGAGAAGC
AAGTAAGAGCGTGTGAGAAGGAGAATAAAGACAACAATGACGAGATGGAA
TCCCAAGAGGACAAAAGCATGGAGGGAAGGAAAGAAGGGATAGGCAAGAG
GGAGCAGGGGAATTCGGGAATCTTTGACGGGTATCCTATAATCCCTCCGA
CCCTCTCTACGCACCCTCCCGACTCGCCCTCTCCGCCCCTCCGTCTCTAT
CCCAATGCTTCCTAG

protein sequence of NO21G02690.1

>NO21G02690.1-protein ID=NO21G02690.1-protein|Name=NO21G02690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=805bp
MDNPGLNHHKSQSLAQVPTATEEVDMAAAGIWSQQQHASPGSQEQQRPYI
ATAAGAAVATERVDTTMLAMAREEGNVGQDDEEVPLDEGELCMLRQLMCE
TPTGRGSGITILSTPTDETGFTIPFQEHLCQHYQQRYTQEQQQEHWQQRE
QGIDTALLDEMEDEVSTFFALLEEEEGEPSLHLASSTTTGPLGGPPAAAT
SAAAAAAAPTTDDGLQSLPLQHRRQQQHEQHRHQQQQEMQQQQHYDERNF
AFPFEEADHEVFSQSQLEHQLQNQPQHYYQQHDCHDTLYLPVFASPRNAP
CVLTVAEEAALPPPAAGTVGHSRHPSSRAAKAAAEPRPASVEVAAAVETL
SSLFTPWSAAALAAAAGSSSFSSTSSPPSSGSFPSRSLPTNSTPSFSKHN
TSCCFSPPLLSPHRSHSAHPPALNPPNPTGPPRPTASRHPIHQPSLLPVV
IRILIIDESLACLRTTVTFLQSSLAGAVAAAAAATAATATATAANATATT
TTTTTAVSIPNATASGVCTNINAAAAASFSLPSTPESASAAAPTDRSQGE
KEGESPAPRTIAKAVIASQSGQAAAESSPPLPKPALFPSIFPHIHRLHFV
VDAARDTLMGLEHFSRHDPDVVLLSHTLHIHTPPSAVVLPPATESAAEEV
EATHGAAEGAATVASGASEMAKRMKQEWGYTGAVLLLVGREGEMEEGQKE
QGVKSRGRQRVKCRRLALPAPSVVDRNKESEEKQVRACEKENKDNNDEME
SQEDKSMEGRKEGIGKREQGNSGIFDGYPIIPPTLSTHPPDSPSPPLRLY
PNAS*

mRNA from alignment at chr21:829649..832398+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO21G02690.1 ID=NO21G02690.1|Name=NO21G02690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2750bp|location=Sequence derived from alignment at chr21:829649..832398+ (Nannochloropsis oceanica)
ATGGATAATCCCGGGCTCAATCATCACAAGTCGCAGTCGCTCGCTCAAGT
TCCCACAGCAACGGAGGAGGTCGACATGGCCGCCGCTGGCATCTGGAGCC
AGCAGCAGCACGCATCGCCAGGGAGCCAGGAACAGCAACGCCCATACATC
GCGACGGCGGCTGGTGCTGCTGTTGCGACAGAGAGAGTAGACACGACGAT
GCTGGCCATGGCCAGGGAGGAGGGGAACGTGGGCCAGGACGACGAAGAAG
TGCCCTTGGACGAGGGAGAACTGTGCATGCTGCGACAGCTGATGTGTGAG
ACCCCGACAGGGAGAGGGAGTGGAATTACGATATTGTCGACTCCCACAGA
CGAAACGGGCTTTACCATTCCATTCCAGGAGCATCTTTGCCAGCACTACC
AACAACGCTACACGCAGGAGCAGCAGCAAGAGCACTGGCAGCAACGGGAG
CAGGGGATCGACACTGCGCTGTTGGATGAGATGGAGGATGAGGTCAGCAC
GTTTTTCGCCCTCCTGGAAGAAGAGGAAGGCGAACCCTCGCTGCATCTCG
CCTCGTCCACTACTACAGGACCGCTTGGTGGCCCTCCTGCTGCTGCTACT
TCTGCGGCGGCGGCGGCAGCGGCTCCTACTACTGATGATGGTTTACAAAG
TCTCCCCTTGCAGCACCGGCGCCAGCAACAACATGAGCAGCACCGTCATC
AGCAGCAGCAAGAGATGCAGCAGCAGCAGCATTACGATGAGCGCAATTTC
GCTTTTCCCTTTGAGGAGGCCGACCACGAAGTATTTAGCCAAAGCCAACT
AGAGCACCAGCTGCAGAACCAGCCCCAGCATTACTACCAGCAACATGACT
GCCATGATACTTTATATCTGCCAGTTTTTGCTTCCCCGCGTAATGCCCCT
TGCGTTCTCACCGTTGCAGAAGAAGCTGCGTTGCCACCACCAGCAGCAGG
AACAGTAGGACACTCAAGGCATCCGTCATCAAGGGCAGCAAAAGCAGCCG
CAGAACCAAGACCAGCATCTGTGGAGGTAGCAGCAGCAGTTGAAACCCTA
TCCTCCCTCTTTACACCTTGGTCCGCAGCAGCCTTAGCTGCCGCCGCTGG
CTCTTCAAGCTTTTCTTCCACTTCCTCCCCTCCCTCCTCCGGTTCTTTCC
CTTCCCGTTCTCTCCCAACAAACAGTACTCCTTCCTTCTCTAAGCACAAC
ACCAGCTGCTGTTTCTCTCCTCCTCTCCTCTCTCCCCATCGATCCCATTC
GGCTCATCCTCCCGCCCTCAACCCCCCTAATCCTACCGGTCCTCCACGTC
CCACCGCCAGTCGTCATCCCATTCATCAACCGTCCCTTCTCCCCGTCGTC
ATCCGCATCCTTATTATCGACGAGAGCCTTGCTTGCCTCCGGACCACGGT
CACTTTCTTGCAATCCTCTTTGGCTGGGGCTGTTGCTGCTGCGGCTGCTG
CTACTGCTGCTACTGCTACTGCTACTGCTGCTAATGCTACTGCTACTACG
ACTACGACTACAACTGCTGTTTCTATTCCTAATGCTACTGCTTCTGGCGT
TTGCACCAATATCAACGCAGCAGCTGCCGCTTCTTTTTCACTACCATCGA
CACCGGAGTCAGCTTCAGCTGCAGCACCAACAGATAGAAGTCAGGGAGAA
AAGGAAGGCGAATCGCCCGCTCCACGAACAATAGCGAAAGCAGTGATAGC
GTCCCAATCCGGACAAGCAGCAGCAGAATCCTCACCACCACTGCCAAAAC
CAGCACTATTCCCATCGATCTTCCCCCACATCCATCGCCTACATTTTGTT
GTTGACGCGGCCCGGGACACGCTCATGGGTCTTGAGCATTTCTCCCGCCA
CGACCCCGACGTCGTCCTCCTCTCTCACACTTTACACATCCACACTCCAC
CATCAGCAGTGGTACTACCACCCGCAACAGAATCGGCTGCAGAGGAAGTA
GAAGCAACACATGGAGCAGCAGAAGGAGCAGCAACAGTAGCATCAGGAGC
ATCAGAGATGGCAAAAAGAATGAAACAGGAGTGGGGATACACAGGGGCGG
TCCTTCTGTTGGTGGGAAGAGAGGGGGAAATGGAAGAAGGCCAGAAGGAG
CAAGGAGTGAAGAGTAGAGGCAGACAGAGGGTGAAGTGTAGACGATTGGC
ACTGCCAGCTCCCTCGGTAGTCGATAGGAATAAGGAAAGCGAGGAGAAGC
AAGTAAGAGCGTGTGAGAAGGAGAATAAAGACAACAATGACGAGATGGAA
TCCCAAGAGGACAAAAGCATGGAGGGAAGGAAAGAAGGGATAGGCAAGAG
GGAGCAGGGGAATTCGGGAATCTTTGACGGGTGCGTGACTAGACCCTTCT
CCGCCTCCTCCCTCCTTCGCTCACTTCTGGACGTGATCGAGCCCCGTTTG
GGCGATGAAATACCTTACTGCCCCACCTTGTGGTCATCGTTTCCTCCAGC
TACTGAGGCCACGGCTGCACCTCTCCATCCCTGTACTTTTCCTCCTCATC
CTCATCTTGAACGTAACCATTTTCCTTCTTACTGTCGTCGTCCTTCCCCT
CCACCACCTCCTTCATCTATCTCACCTTTTCTTCCTTCACAAGCTCTTTT
TCCTCCTCCTCCTCTGTCGTCCTCTTCCTTCTCAAAAAAGCACAGCGACA
CCCCCCTACACCAAGGTATCCTATAATCCCTCCGACCCTCTCTACGCACC
CTCCCGACTCGCCCTCTCCGCCCCTCCGTCTCTATCCCAATGCTTCCTAG

Coding sequence (CDS) from alignment at chr21:829649..832398+

>NO21G02690.1 ID=NO21G02690.1|Name=NO21G02690.1|organism=Nannochloropsis oceanica|type=CDS|length=2415bp|location=Sequence derived from alignment at chr21:829649..832398+ (Nannochloropsis oceanica)
ATGGATAATCCCGGGCTCAATCATCACAAGTCGCAGTCGCTCGCTCAAGT
TCCCACAGCAACGGAGGAGGTCGACATGGCCGCCGCTGGCATCTGGAGCC
AGCAGCAGCACGCATCGCCAGGGAGCCAGGAACAGCAACGCCCATACATC
GCGACGGCGGCTGGTGCTGCTGTTGCGACAGAGAGAGTAGACACGACGAT
GCTGGCCATGGCCAGGGAGGAGGGGAACGTGGGCCAGGACGACGAAGAAG
TGCCCTTGGACGAGGGAGAACTGTGCATGCTGCGACAGCTGATGTGTGAG
ACCCCGACAGGGAGAGGGAGTGGAATTACGATATTGTCGACTCCCACAGA
CGAAACGGGCTTTACCATTCCATTCCAGGAGCATCTTTGCCAGCACTACC
AACAACGCTACACGCAGGAGCAGCAGCAAGAGCACTGGCAGCAACGGGAG
CAGGGGATCGACACTGCGCTGTTGGATGAGATGGAGGATGAGGTCAGCAC
GTTTTTCGCCCTCCTGGAAGAAGAGGAAGGCGAACCCTCGCTGCATCTCG
CCTCGTCCACTACTACAGGACCGCTTGGTGGCCCTCCTGCTGCTGCTACT
TCTGCGGCGGCGGCGGCAGCGGCTCCTACTACTGATGATGGTTTACAAAG
TCTCCCCTTGCAGCACCGGCGCCAGCAACAACATGAGCAGCACCGTCATC
AGCAGCAGCAAGAGATGCAGCAGCAGCAGCATTACGATGAGCGCAATTTC
GCTTTTCCCTTTGAGGAGGCCGACCACGAAGTATTTAGCCAAAGCCAACT
AGAGCACCAGCTGCAGAACCAGCCCCAGCATTACTACCAGCAACATGACT
GCCATGATACTTTATATCTGCCAGTTTTTGCTTCCCCGCGTAATGCCCCT
TGCGTTCTCACCGTTGCAGAAGAAGCTGCGTTGCCACCACCAGCAGCAGG
AACAGTAGGACACTCAAGGCATCCGTCATCAAGGGCAGCAAAAGCAGCCG
CAGAACCAAGACCAGCATCTGTGGAGGTAGCAGCAGCAGTTGAAACCCTA
TCCTCCCTCTTTACACCTTGGTCCGCAGCAGCCTTAGCTGCCGCCGCTGG
CTCTTCAAGCTTTTCTTCCACTTCCTCCCCTCCCTCCTCCGGTTCTTTCC
CTTCCCGTTCTCTCCCAACAAACAGTACTCCTTCCTTCTCTAAGCACAAC
ACCAGCTGCTGTTTCTCTCCTCCTCTCCTCTCTCCCCATCGATCCCATTC
GGCTCATCCTCCCGCCCTCAACCCCCCTAATCCTACCGGTCCTCCACGTC
CCACCGCCAGTCGTCATCCCATTCATCAACCGTCCCTTCTCCCCGTCGTC
ATCCGCATCCTTATTATCGACGAGAGCCTTGCTTGCCTCCGGACCACGGT
CACTTTCTTGCAATCCTCTTTGGCTGGGGCTGTTGCTGCTGCGGCTGCTG
CTACTGCTGCTACTGCTACTGCTACTGCTGCTAATGCTACTGCTACTACG
ACTACGACTACAACTGCTGTTTCTATTCCTAATGCTACTGCTTCTGGCGT
TTGCACCAATATCAACGCAGCAGCTGCCGCTTCTTTTTCACTACCATCGA
CACCGGAGTCAGCTTCAGCTGCAGCACCAACAGATAGAAGTCAGGGAGAA
AAGGAAGGCGAATCGCCCGCTCCACGAACAATAGCGAAAGCAGTGATAGC
GTCCCAATCCGGACAAGCAGCAGCAGAATCCTCACCACCACTGCCAAAAC
CAGCACTATTCCCATCGATCTTCCCCCACATCCATCGCCTACATTTTGTT
GTTGACGCGGCCCGGGACACGCTCATGGGTCTTGAGCATTTCTCCCGCCA
CGACCCCGACGTCGTCCTCCTCTCTCACACTTTACACATCCACACTCCAC
CATCAGCAGTGGTACTACCACCCGCAACAGAATCGGCTGCAGAGGAAGTA
GAAGCAACACATGGAGCAGCAGAAGGAGCAGCAACAGTAGCATCAGGAGC
ATCAGAGATGGCAAAAAGAATGAAACAGGAGTGGGGATACACAGGGGCGG
TCCTTCTGTTGGTGGGAAGAGAGGGGGAAATGGAAGAAGGCCAGAAGGAG
CAAGGAGTGAAGAGTAGAGGCAGACAGAGGGTGAAGTGTAGACGATTGGC
ACTGCCAGCTCCCTCGGTAGTCGATAGGAATAAGGAAAGCGAGGAGAAGC
AAGTAAGAGCGTGTGAGAAGGAGAATAAAGACAACAATGACGAGATGGAA
TCCCAAGAGGACAAAAGCATGGAGGGAAGGAAAGAAGGGATAGGCAAGAG
GGAGCAGGGGAATTCGGGAATCTTTGACGGGTATCCTATAATCCCTCCGA
CCCTCTCTACGCACCCTCCCGACTCGCCCTCTCCGCCCCTCCGTCTCTAT
CCCAATGCTTCCTAG

Synonyms

Publications