NO21G02660.1, NO21G02660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G02660.1
Unique NameNO21G02660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length957
Alignment locationchr21:819157..821157 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:819157..821157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G02660.1 vs.
Match: EWM22745.1 (oxidoreductase transition metal ion binding protein [Nannochloropsis gaditana])

HSP 1 Score: 386.7 bits (992), Expect = 6.800e-104
Identity = 203/309 (65.70%), Postives = 234/309 (75.73%), Query Frame = 0 
Query:    7 PPATAAQPFEAAALSPGED------VFGAGLRVLLAPCAFEKAHLTLAAVRAYQEKRLHLPSPLPLPREEVDSRLPAMPARPPHPSSSS--TSNPSNSSQKLPKKGVAVSIHGIAHAESWAIDLMWDLMLRFAYDSHAAEASFWDDFLEIAKQEAEHFLSWAIRLEEGYGLRYGCLSGTDTLWASAEASKDDVMARLSLINLVQEARGLDTSELTLRRLLRAGDEASADTLRKNAKEEEGHVAAGIKWFGFLKDARHLEGSPESVFHAYVKDRHKGVILPPFNDEARRRAGMRDEWYLPLVTPKKEGGR 308
            PP  A+Q  +   L+  ED      +F AGL+VL A C F+KA LTL+ V AY E RL LPS LPL +EEV +R+P  PARP HP + S  +S P+       KKG+  SIHGIAHAESWAIDLMWDL+LRFAYD  AAE SFWDDFL I ++EAEHFLSW  RLEEGYG+RYG L   D LW  AEASKDDVMAR SLINL+QEARGLDTSE+TL+RLLRAGD  SA+TL+KNAKEEEGHVAAGIKWF ++KD R L+GS ES FH YVK+R++G I PPFN EARRRAGM + WY PLVTP KEGG+
Sbjct:    4 PPTLASQSSDITPLATSEDSPCFGDIFDAGLKVLNASCPFQKASLTLSGVDAYLEGRLGLPSSLPLSKEEVLARIPVKPARPTHPRAPSLPSSVPAGPPMSGKKKGIVASIHGIAHAESWAIDLMWDLLLRFAYDVQAAEPSFWDDFLRIVREEAEHFLSWTRRLEEGYGIRYGTLPVHDALWECAEASKDDVMARFSLINLLQEARGLDTSEITLQRLLRAGDSVSAETLQKNAKEEEGHVAAGIKWFCYVKDKRLLQGSCESNFHRYVKERYRGRIAPPFNVEARRRAGMCEAWYFPLVTPSKEGGK 312
The following BLAST results are available for this feature:
BLAST of NO21G02660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
100200300400500600700800900Expect = 6.80e-104 / Id = 65.70SequenceEWM22745.1
Match NameE-valueIdentityDescription
EWM22745.16.800e-10465.70oxidoreductase transition metal ion binding protei... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G02660NO21G02660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G02660.1NO21G02660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G02660.1.cds1NO21G02660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02660.1.cds2NO21G02660.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02660.1.cds3NO21G02660.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02660.1.cds4NO21G02660.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02660.1.cds5NO21G02660.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02660.1.cds6NO21G02660.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02660.1.cds7NO21G02660.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G02660.1 ID=NO21G02660.1|Name=NO21G02660.1|organism=Nannochloropsis oceanica|type=mRNA|length=957bp
ATGCCACCAGAAAAATCACCACCGGCGACAGCAGCACAACCATTTGAAGC
GGCAGCATTATCGCCAGGGGAGGACGTTTTTGGAGCTGGCTTGCGCGTCC
TCCTTGCACCCTGTGCCTTTGAGAAAGCCCATCTGACCCTCGCGGCTGTG
CGAGCGTATCAAGAGAAGCGCTTGCATTTGCCGTCCCCCTTGCCCCTTCC
GAGAGAGGAGGTTGACTCCAGGCTGCCAGCCATGCCCGCCCGTCCTCCCC
ATCCCTCTTCATCCTCTACCTCCAACCCCAGTAACTCCAGCCAAAAGCTG
CCCAAAAAAGGCGTGGCTGTCTCCATCCACGGCATCGCTCACGCCGAGTC
CTGGGCCATCGATCTGATGTGGGACTTGATGCTACGTTTCGCCTATGACA
GCCACGCGGCGGAAGCCTCCTTCTGGGATGACTTTCTGGAGATTGCAAAG
CAAGAAGCCGAGCATTTCCTTTCATGGGCCATACGTTTGGAAGAAGGATA
TGGATTGCGTTACGGCTGCCTGTCCGGCACCGACACTCTCTGGGCGTCCG
CCGAGGCCAGCAAAGACGACGTGATGGCCCGCCTCTCTTTAATCAATCTA
GTCCAAGAAGCAAGGGGCTTGGACACGTCCGAGCTCACGTTACGGCGTCT
ACTCCGAGCGGGCGACGAGGCGAGTGCAGATACACTGCGTAAGAACGCCA
AGGAAGAAGAAGGACACGTGGCAGCTGGGATCAAGTGGTTTGGCTTCCTA
AAGGATGCGCGTCACTTGGAAGGTTCGCCAGAATCTGTTTTTCACGCGTA
CGTGAAGGACAGACACAAGGGAGTGATCCTCCCCCCTTTCAATGACGAGG
CGAGAAGGAGGGCGGGAATGAGGGATGAGTGGTACCTTCCCTTGGTGACA
CCCAAGAAGGAGGGAGGGAGGGAGGTGGCGTGTGAAGAAATGAAACAGAC
GACGTAA
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protein sequence of NO21G02660.1

>NO21G02660.1-protein ID=NO21G02660.1-protein|Name=NO21G02660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MPPEKSPPATAAQPFEAAALSPGEDVFGAGLRVLLAPCAFEKAHLTLAAV
RAYQEKRLHLPSPLPLPREEVDSRLPAMPARPPHPSSSSTSNPSNSSQKL
PKKGVAVSIHGIAHAESWAIDLMWDLMLRFAYDSHAAEASFWDDFLEIAK
QEAEHFLSWAIRLEEGYGLRYGCLSGTDTLWASAEASKDDVMARLSLINL
VQEARGLDTSELTLRRLLRAGDEASADTLRKNAKEEEGHVAAGIKWFGFL
KDARHLEGSPESVFHAYVKDRHKGVILPPFNDEARRRAGMRDEWYLPLVT
PKKEGGREVACEEMKQTT*
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mRNA from alignment at chr21:819157..821157+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02660.1 ID=NO21G02660.1|Name=NO21G02660.1|organism=Nannochloropsis oceanica|type=mRNA|length=2001bp|location=Sequence derived from alignment at chr21:819157..821157+ (Nannochloropsis oceanica)
ATGCCACCAGAAAAATCACCACCGGCGACAGCAGCACAACCATTTGAAGC
GGCAGCATTATCGCCAGGGGAGGACGTTTTTGGAGCTGGTAAGTTTTAGT
CGCCCCCCTGCTCCCTCATGGTATTTATTCTCCCTCCTGCCTTCATCTCA
CTCAGTTCTCCCTTTCTCTCTTCCCAGGCTTGCGCGTCCTCCTTGCACCC
TGTGCCTTTGAGAAAGCCCATCTGACCCTCGCGGCTGTGCGAGCGTATCA
AGAGAAGCGCTTGCATTTGCCGTCCCCCTTGCCCCTTCCGAGAGAGGAGG
TTGACTCCAGGCTGCCAGCCATGCCCGGTGAGAACGAGGAGAGAGAGAGG
GAAAGGGAGGGAGGAACAGAAAGACAATTAGGGCATTATTACATTTTGTG
TACACACTCACATATTTCTATCACATCATTCACACGTATACTGGCGGCGA
AACAGCCCGTCCTCCCCATCCCTCTTCATCCTCTACCTCCAACCCCAGTA
ACTCCAGCCAAAAGCTGCCCAAAAAAGGCGTGGCTGTCTCCATCCACGGC
ATCGCTCACGCCGAGTCCTGGGCCATCGATCTGATGTGGGACTTGATGCT
ACGGTACATGCAAGCCCCCCCTCCATCCCACCCTCCCTACCTGCCTCTTA
GCCTTTGGACGAGTCCTGGGCCTAGATGAAAATGTCGCGATCCTTCTCTC
GCGCGTCACTCCCCCCTTTCTCCCTCCCTTCCTTCCTTCTTCGCTGTTGC
TTACCTCAAGCACGGCCACTCATCCCCTTTTCTCATTTCCCCACCTTCCC
CACTCCGTTCGGCAGTTTCGCCTATGACAGCCACGCGGCGGAAGCCTCCT
TCTGGGATGACTTTCTGGAGATTGCAAAGCAAGAAGCCGAGCATTTCCTT
TCATGGGCCATACGTTTGGAAGAAGGATATGGATTGCGGTACGTTCCTCC
TTTCTTTCTCTCTTTCTCTCCACCCCTTTCTACTGTGTTTCGCTCTTCCT
TCCTCGCTTTCTATGCCATCCAGGCTGTCTCAAGCCTTCACATCCTGCCT
CCCTTCCCCCTCTCTCTACCCCTTCCCTGGCAGTTACGGCTGCCTGTCCG
GCACCGACACTCTCTGGGCGTCCGCCGAGGCCAGCAAAGACGACGTGATG
GCCCGCCTCTCTTTAATCAATCTAGTCCAAGAAGCAAGGGGCTTGGACAC
GTCCGAGCTCACGTTACGGGTACGTGCATTCCCTCCTCCCCACCTTCCTT
CCTTCCTTCCCTCCGCGGGCATGGTGCGCCTCCATCTGCATCATCACACC
CCAACAACACGAAGAGCGCGAGACTCGTACTCACTTCAAACAAGCATGTC
TCTTTCCTCTCCCTCCCTCCCTCATTCCCACTCTCCTTCTCTTCGGTTCC
CTCGCTCCTTTCTTTCCTTGTGCTACCTAGAACCACCGCTCATAGACCGC
TCAGATGGGAAGACGACTAAGGGACGACGCCTCATTCTCGATTTTCTCCC
CTCCCTTGCGCCCATGCCCCCCCCCCCCCCCCTTCCTTCCCGCCCTCCTT
CCCTCCCTCAGCGTCTACTCCGAGCGGGCGACGAGGCGAGTGCAGATACA
CTGCGTAAGAACGCCAAGGAAGAAGAAGGACACGTGGCAGCTGGGATCAA
GTGGTTTGGCTTCCTAAAGGCGAGTTAGGGAAGGAAAGGGAGGGAGGGAG
GGAAAGGGAGGAAGGGAAAAGGGAGAACAAGGACGTTGGGGTCCACAGCG
ATGGATTGCCTCACTTTCCGTTCGCCTTCCTTCCCTCCCTTCCTCAGGAT
GCGCGTCACTTGGAAGGTTCGCCAGAATCTGTTTTTCACGCGTACGTGAA
GGACAGACACAAGGGAGTGATCCTCCCCCCTTTCAATGACGAGGCGAGAA
GGAGGGCGGGAATGAGGGATGAGTGGTACCTTCCCTTGGTGACACCCAAG
AAGGAGGGAGGGAGGGAGGTGGCGTGTGAAGAAATGAAACAGACGACGTA
A
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Coding sequence (CDS) from alignment at chr21:819157..821157+

>NO21G02660.1 ID=NO21G02660.1|Name=NO21G02660.1|organism=Nannochloropsis oceanica|type=CDS|length=957bp|location=Sequence derived from alignment at chr21:819157..821157+ (Nannochloropsis oceanica)
ATGCCACCAGAAAAATCACCACCGGCGACAGCAGCACAACCATTTGAAGC
GGCAGCATTATCGCCAGGGGAGGACGTTTTTGGAGCTGGCTTGCGCGTCC
TCCTTGCACCCTGTGCCTTTGAGAAAGCCCATCTGACCCTCGCGGCTGTG
CGAGCGTATCAAGAGAAGCGCTTGCATTTGCCGTCCCCCTTGCCCCTTCC
GAGAGAGGAGGTTGACTCCAGGCTGCCAGCCATGCCCGCCCGTCCTCCCC
ATCCCTCTTCATCCTCTACCTCCAACCCCAGTAACTCCAGCCAAAAGCTG
CCCAAAAAAGGCGTGGCTGTCTCCATCCACGGCATCGCTCACGCCGAGTC
CTGGGCCATCGATCTGATGTGGGACTTGATGCTACGTTTCGCCTATGACA
GCCACGCGGCGGAAGCCTCCTTCTGGGATGACTTTCTGGAGATTGCAAAG
CAAGAAGCCGAGCATTTCCTTTCATGGGCCATACGTTTGGAAGAAGGATA
TGGATTGCGTTACGGCTGCCTGTCCGGCACCGACACTCTCTGGGCGTCCG
CCGAGGCCAGCAAAGACGACGTGATGGCCCGCCTCTCTTTAATCAATCTA
GTCCAAGAAGCAAGGGGCTTGGACACGTCCGAGCTCACGTTACGGCGTCT
ACTCCGAGCGGGCGACGAGGCGAGTGCAGATACACTGCGTAAGAACGCCA
AGGAAGAAGAAGGACACGTGGCAGCTGGGATCAAGTGGTTTGGCTTCCTA
AAGGATGCGCGTCACTTGGAAGGTTCGCCAGAATCTGTTTTTCACGCGTA
CGTGAAGGACAGACACAAGGGAGTGATCCTCCCCCCTTTCAATGACGAGG
CGAGAAGGAGGGCGGGAATGAGGGATGAGTGGTACCTTCCCTTGGTGACA
CCCAAGAAGGAGGGAGGGAGGGAGGTGGCGTGTGAAGAAATGAAACAGAC
GACGTAA
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Synonyms
Publications