Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:800169..803644 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G02610.1 vs.
Match: EWM22749.1 (ankyrin repeat and zinc finger domain-containing protein 1, partial [Nannochloropsis gaditana])
HSP 1 Score: 275.0 bits (702), Expect = 6.300e-70
Identity = 171/293 (58.36%), Postives = 209/293 (71.33%), Query Frame = 0
Query: 394 MTEAPSFAETQAVHTRLATIRFSAPPSLLPSLPPTTNTDNNNNNNNNNSSSRSSSSSDNSALSPSLPPSPPPPTADPDWDVALATLILEKSFTPSFLPPSLPPSLLTSRNEEGKTLLHLAAEGGKEGWIEALLLRGANPCLLDLRDRPPYFLCANKGSRDAFRRARGREGGREGGEGGGGGWDWGRAGVPEGLTEEGERRRREKAKEKKKRAKSNKSKRKEGGEGEDGKEEVEEKEQEKEEEME--DLRQPKCDMCGKRVKVLYTRLEFVYCSTDCVQGHKRQLLSEAALRRF 685
M + PSF+ETQA+H+RLAT+RFS PP LPSLPP+ N ++ S SS + L LPPS P P DPDW +ATL+ S PS LPPS+PPS T+RNE G TLLH+AAEGGKE W+EALL RG +P LD RDRP YFLC NK +RDAFRR RGRE G+EGG DW R+GVPEGLTEEGE+R++EKAKEKKKRAK K + K+ G+ ++GKEE E+KE EE +E D ++ CD CGKR+ V ++RLE+VYCSTDCVQ HKR L++EAAL+RF
Sbjct: 1 MPKPPSFSETQAIHSRLATVRFSPPPPWLPSLPPSLPPCNPCPHSVTPDSIAPSSLPPS--LPSPLPPSVPLPPPDPDWSPLVATLVSTAS--PSSLPPSVPPSTFTARNEAGYTLLHIAAEGGKENWVEALLERGCDPSTLDHRDRPAYFLCKNKLTRDAFRRVRGREEGKEGGR------DWERSGVPEGLTEEGEKRKKEKAKEKKKRAKGRKKESKQEGK-QEGKEEGEDKEGGGEEGVEEGDSQKLLCDACGKRIHVFFSRLEYVYCSTDCVQTHKRTLMAEAALKRF 282
The following BLAST results are available for this feature:
BLAST of NO21G02610.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 Expect = 6.30e-70 / Id = 58.36 Sequence EWM22749.1
Match Name E-value Identity Description
EWM22749.1 6.300e-70 58.36 ankyrin repeat and zinc finger domain-containing p... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G02610.1 ID=NO21G02610.1|Name=NO21G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2454bp back to top protein sequence of NO21G02610.1
>NO21G02610.1-protein ID=NO21G02610.1-protein|Name=NO21G02610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=689bp back to top mRNA from alignment at chr21:800169..803644-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02610.1 ID=NO21G02610.1|Name=NO21G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=3476bp|location=Sequence derived from alignment at chr21:800169..803644- (Nannochloropsis oceanica)ATGTCATCCAAGACGGCGGC
GACCCCCTCCTGGGAGTGGGCCAAGGCCTTGCCAGCCTTTGTACGGGAGA
AAGGGTGGAGAGCCAAGGCGTACTCTAAGGGGAACAAGCTCCAGGCGACG
TACTACCACTGCTCCCTCTTTGATGTGCCCCCGTCGTTCTGGGCTGAGTT
ATTGGGAGGTGGGGACAAGGAAAGAGGGGACGAGCAGAAGGTGGAGTCAT
TGACGGCAGGGATGGAGGTGTGTGGGCTAACAAGAGGAGAGGGAGGGAGG
GAGGAAGAGGACCGGGTACTGGAGGGGGAAGAGGAGGAGGAAGGCCTGGG
GGAGGGAGGGAATGATGGAGCCGGCACCAAGCGGATGGAGTGCCGAAAGT
GCCTGTGTGTTTTCCCGATGGAGGAGCGGGTGGCGCATTACCAGTCGGCC
TGGCATCTGTGCAACTTGCGTCGAGGGTTGGCAAGGAA GTGAGTCATGGA
CGGGGGGAGGGAGGGAGAGAGGAAGCATGTAAATACAGCGAGAAAGGGAA
ACTTAAGAGAGAGACGCAGAATGAATTTAAGTTTTACACCCACATTTTAC
GTCGCTCGACTTTGTTCTACTTGACAGGCCGCCGGTTTCCCTGGAGGAAT
TCGATCGCCAGCGTCAGGAAGGCGAAGGCAATACAGGAGGCAGCAGCAAC
AGCAGCAGCAGCAGCATCAGCGGCAATGGCAGCATCAAGGAGGCGGACGA
AGGGGTTGAGGATGAGGATGAAGAGAGCGACGAGGAAGGAGCGGCTGGGA
AGGTACGGCCTGACATCCAGACGGAAAGTGCGGAGCTGACGCTGCGACGA
GCACAG GTACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCATCACCTCCTC
AACTCTTATCTACTCCCCCTCCTTCTTCAGACTCCTTGCACTTTTTTTTG
TGAACCTTTCTCTTCTGCTTTGACGTCAACCGGGGCCAGCCACAAACCTG
ACACCCTCACTAACCTCCCTCACTCCCTCGCGCAGGCTCCTTACGCTGTC
ACGTTGTGGTCTGTCCTCCTCTCTTCTGACGCCAAGCGAGCCAGCAATAC
CGAGCTTCTAAACGCCATGCAGCACACCCTCGCTTGTGGGGCAGCAGCAG
CAGCAACAGCTGGGAAGCGTCGATGGGCCGTGTTAATGCTACGCTCAG GT
TTGGGTCCACAAATTTCTTTTCTCCCTCCCTCTAGCCCTCCCTCCCACCA
GCCTCCCTTCCCCTTGACTGCATGGCCCCATCGCTTTCTTTTGGTCTGTC
CATCCTTCGCCTTCTAGGTATCCATCCCTCCCTCCCTCCCTCCCTCCCTC
TTTCAGGGAAATTCGCGGGTGCGGTTTTCGAGGGCCATCGGGTGCTAGCC
CACAAGGCTTTCAGGCGGTACACCGTCCGAGCGAAGGCGGGAGGAAGCCA
GAGCGCGTACGACAACCAAG GTGGGAGGGAGGGAGGGAGAGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGG
GAGGGAGGGAGGGAGGGAGAGAGGGTAGGCGTGACACGGTCCGAACCAAA
GCAGGAGGAAATTAGAGTGTTTAGAAATAGCAAGACATACCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCTTTTCTTTTCGCGTAACCTACCTGAATACA
TGTAACCACACACATCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTTCC
ACAAGGGCGACGGGCGCAGTCCGTGGGGTCCCAATTGAGACGATACGGCG
AGCAAAAAACTACCGAAGACGTCAGGGCCGTGTTGGAGGAATGGAAAGCT
TTGATAGAGGGCTGCGAGCTGCTCTTCCTCTCCCTCCCCAAGACCATGAG
AGGGGTGATGCTGGGAGATGAG GTGAGTGGGAGGGAGGGTGGGAGGGAGG
GTAGAGGGGCAAAATCTGATAGGAGAAAGTGAGCTGTTGGCGTCGATTTC
CTCTCTCGTTCAAGACAACGAGGCCGTGCGGGATGACGAGATAGGTTGAT
TTTCCCTCCCTCCCTCCCACCCTCCTTCCTTTCCTCCCTCCTTTTTTCCC
GCCCTTTTGTGAACAATGCGAAGCACTGAATTTCCTTCCCTTCTCCCCTC
CCTCCCCGCCATCCTTCCCTCCCTTCTTTCTAGCCCCCCCTCCTTCGGCG
GGACGACGCTCGCCTTCGATCCGTTCCTTTTATGACCGAGGCCCCCTCGT
TCGCCGAGACCCAGGCCGTCCACACCCGCCTCGCTACCATCCGTTTCTCC
GCCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCACCACAAACACTGACAA
CAACAACAACAACAACAACAACAATAGCAGCAGCAGGAGCAGCAGCAGCA
GCGACAACAGTGCCCTCTCTCCCTCCCTCCCTCCCTCCCCCCCTCCCCCT
ACCGCTGATCCTGACTGGGACGTCGCCCTCGCTACGCTCATCCTTGAGAA
ATCCTTTACCCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTACTCA
CCTCTCGAAACGAGGAGGGCAAGACCCTACTGCATCTGGCGGCGGAGGGC
GGGAAGGAGGGATGGATAGAGGCGCTGCTCTTAAGGGGGGCGAACCCCTG
CCTCCTTGACTTAAGAGACAGGCCTCCTTATTTTTTGTGTGCGAATAAAG
GATCAAGAGATGCGTTTAGGAGGGCGAGGGGGAGGGAGGGAGGGAGGGAG
GGAGGGGAAGGTGGAGGCGGAGGGTGGGACTGGGGTAGGGCGGGAGTCCC
TGAGGGGCTGACGGAGGAAGGGGAGAGGAGGAGGAGGGAGAAGGCGAAGG
AAAAGAAGAAACGCGCCAAGAGCAACAAGAGCAAGAGGAAGGAGGGGGGG
GAAGGAGAGGATGGGAAGGAGGAGGTGGAAGAGAAGGAGCAGGAGAAGGA
GGAGGAGATGGAGGATCTGAGGCAGCCGAAGTGCGACATGTGTGGGAAGC
GAGTCAAGGTGCTCTATACTCGCCTGGAGTTCGTTTATTGCTCTACCGAC
TGCGTGCAGGGGCATAAGAGGCAGCTGTTGAGCGAGGCGGCTTTGAGGAG
ATTTGGAGGTGGACTATGA back to top Coding sequence (CDS) from alignment at chr21:800169..803644-
>NO21G02610.1 ID=NO21G02610.1|Name=NO21G02610.1|organism=Nannochloropsis oceanica|type=CDS|length=2067bp|location=Sequence derived from alignment at chr21:800169..803644- (Nannochloropsis oceanica) back to top