Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:793593..800168 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G02600.1 vs.
Match: EWM20850.1 (hypothetical protein Naga_100514g1 [Nannochloropsis gaditana])
HSP 1 Score: 140.6 bits (353), Expect = 2.700e-29
Identity = 79/167 (47.31%), Postives = 107/167 (64.07%), Query Frame = 0
Query: 10 LLLLLIVYVLMLSPVAVVQAYPHYLLNPEGCVDKKLEVGFKMMAYPAILDK-VKGTPIKVYRRGQLLANGSEYKSGETLTVRVEGRAGQYCLETRGD-AVFNDGACDGKRTTQEQVMALPMGEASYLKPVRLVAGIASNEFAPVVITKPFLLRAPGTMPKGGPPKAD 175
L L V +L+L + + YP YLLNP+GC +KLEVGF +M P + +K +K +PI V R L +GSEYKSGETL+V++EGRAG YC+E RG A+F+ GACDG R T+ V+ALP+G+ L+ V L G+AS + PV + PF+L PG G + D
Sbjct: 82 LPLASCVLLLLLPLLPLTWGYPSYLLNPDGCRSQKLEVGFDIMGSPVVEEKAMKESPIVVLRGDTALHSGSEYKSGETLSVKLEGRAGMYCMEVRGGAAMFSGGACDGTRVTEPDVLALPIGDKETLQTVTLHVGLAS-RYGPVTLLPPFVLHPPGKDSAAGKGERD 247
The following BLAST results are available for this feature:
BLAST of NO21G02600.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 Expect = 2.70e-29 / Id = 47.31 Sequence EWM20850.1
Match Name E-value Identity Description
EWM20850.1 2.700e-29 47.31 hypothetical protein Naga_100514g1 [Nannochloropsi... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G02600.1 ID=NO21G02600.1|Name=NO21G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=3295bp back to top protein sequence of NO21G02600.1
>NO21G02600.1-protein ID=NO21G02600.1-protein|Name=NO21G02600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=998bp back to top mRNA from alignment at chr21:793593..800168+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02600.1 ID=NO21G02600.1|Name=NO21G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=6576bp|location=Sequence derived from alignment at chr21:793593..800168+ (Nannochloropsis oceanica)ATGGCGCGCCCCAACCCCATTCCTATTCTCCTGCTCCTCCTCATTGTCTA
TGTGCTGATGCTGTCGCCGGTGGCGGTGGTGCAGGCATATCCACATTATC
TCTTGAACCCTGAAGGCTGCGTCGACAAAAAGCTCGAG GTAGGGGAGGGA
GGGAGAACGGGAGGGAAGGCAAGGGAAGGAAATGTAGGACAGTGTGAGCG
TCGGTGGATTTTGACTGATTCATTGGATAGAGCCATGGCGGTTGAAAAAC
GAACCAAATGAGGGAGAAGGAGTGGAAGTAAGGGCGAGGGAGGGTAGGGT
ATCGGACACTCACCCACAAGCATATCCACCCATCAACTGCCACCAGGTGG
GGTTCAAAATGATGGCCTACCCCGCCATCTTAGACAAAGTGAAAGGCACG
CCCATCAAG GTAAGGATGGAGGGAAGGAGGGGGCAAGTCTTATCTGTTAT
GAAGGTATGAAGGAGGAAGGGAGGGAGGACCAATTAAGCACGCAAAAACC
AAAGATCACCCACGGGCACATAGATACAAACGCACAAACACAAATGGATA
TGTACACACACACACACACACACACACACATATATATATATATATAGGTG
TATCGACGGGGCCAGCTGCTGGCAAATGGGTCAGAGTACAAGAGCGGGGA
GACGCTGACCGTGCGGGTGGAGGGGAGGGCAG GTAAGGGATAGAAGGGTG
GGAGGGAACAGAGGGGAGGGAGTAGGCAGCTGTGCCGATGGTCACACACA
GGAGACAGCCAGCAGTGTCGGTGGATGTCATCACGACGACTTTGATTCAG
GCAGGAAATGGCTGACATTCCATACGCACATCTTCACCTCCCTCCGCCCC
TCCCTCTCTCCCTCCCTCCTTCTTCATCCCTCCCCTTTCATAGGCCAATA
CTGCCTAGAGACCCGGGGGGATGCCGTCTTCAACGACGGGGCATGTGATG
GTAAACGCACCACCCAAGAGCAAGTCATGGCTCTGCCTATGGGGGAGGCG
TCCTACCTGAAGCCAGTCCGCCTGGTGGCTGGCATTGCGTCGAATGAATT
TGCGCCCGTGGTCATTACCAAGCCTTTCCTGCTCCGAG GTAGGTAGGGAG
GGAAGAGGGAAGGAGGGAGGAAGGGACAAGGAGGAGCTGGTTGTTATTTG
GGACGTGCCTCGGACTCTATCGCTCACGCTTCTTTCTATCTTCCTTTCCC
CTCCTCTCCTACCCTTTCCTCCCCTGTTGTTATTTTGGCTCTTATGCCTG
TCCCGATAGCACCAGGCACCATGCCCAAGGGGGGACCGCCCAAAGCTGAC
GCCGATGAAGAGGAAGAAGAG GTGAGTCTCTATACTCTTCCTCCCTTTTC
CCCCTCCCTCCCTCCATCGCCTACGCACCTCACCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCAGGTCTCC
ACAGGCTTCGTCTTAGGCTCGGATGTGCCTCGGCTATCACAGACTATCGT
CCTCGATCGCGACCCAGGCATGGAGATGAGCTGGTCCGTGAGCCCTCAGG
GAGATTACGTGGATATCCAG GTAGCTTTCCACCCTTCCCTCCCTCCCTCC
CTTCCTTCCTCGCAGTCATGCCGGGCGAGGGCGAAGGAGAAAGAGTGGGA
GACATCCTGCTTCCCGACCACCATGTCTCACCCTCTTGCCTTCCCTCTCC
CCCTCCCCCCTCCCTTCCTCGCTCCCTCAACAGGTGGCCGGAATGGGCCA
GACGTGGGTCTCCATCGGCGTCATCTCGGGCAAGCCCCGGATGGTGGACA
CGCCCTACCATCAAGTCATGCTCTTTCCGGACGCCACAG GTACGCCTGCT
CGTCCTTCCTCCCTCCCTCCCCACCCTTCCCTCTCTCCTACCGTCTTTCT
GGCATGGTAAGAGGCGAACACGCTTTTTTTCCCCTCTCTCTTTCCCTCCC
TCCCTCTCTCTTTCCCTCCCTCCCTCCCCCCCTTCCTCCTCGCTACCGCC
AATTTCGCCTCCTTCGCTCCCTCGTTCCCGCACTGCTGTCAACAGGTGAG
GTTTCTTTAGTAGAGCTGCAGGCCCAACGCGCCACGGGCGTCATCCCCCT
ACCCATGGACGACAAG GTACGTCCCAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGCTCAGAGATGGAGAATGAGGGGGAGGT
CGAAAGAAGGTAGCGTGTGCTTACTCATCTGGGTGGCTTTCCCTCTTCCC
TCCCCTCTTCCCTCCCTCCCTCCATTCCTCTCTCCCTCCCTCGTATTATC
TACGTCAAGCCGACATGCATCCTTTCACCCGTCCTACTCTATCCTCTCAC
TCATCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCAGGTCCT
GGAGGTGCTGCTCACACAGGCCACTCCCGACTACACCCTCCTCCGATACC
GACACCATCTCTCAGTCGAACAGCCGAGGAGGGGGCTGGCGGAGG GTGGG
AAGGAGGGAAGGATAAGAAGACACCTAGGCAAGTCAGCAGATGCCTGCCT
ACCTGCACCTCCTCCTCCTTCTAACCATCTGAATCCTTCCTCCCTCCCTC
CCTCACTCCATCCCTCCCTCCACCCCCAGCATCCATCCTCAATCTAGACG
GGAAAAACGACCTTTTATACGCCCGAGGGGCGGGGGCTTACCCCACTATG
CACGACGTTGCGGCCGCCGTGACGGTGGACTGGGCTCGGCAGGCGTCAGA
GCAGCAGGTAGAAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGTGGGAGGAATGGATAAGCGATGG
CTAGAGACGGAGGGGGGCGGAGGGGCCAGGAAACGAAG GTGGGATAGAAA
GAGGGAAGGAAGGAGGGAAGGAGGGAGGGCGAAAAGCAGACATAAACCCG
ACTAATTCTTACGATACTCACCATCATCGCTTCTTCCCTCTCTCCCTCTC
TCTCTTCCCCTCCTTTTCGCCTTCCCTCCTTCCTCCCCTCCGGCGCTACT
ACCCACAAGGGCTTCTCCTCGTCGCACATACTCGACACCCCCTCCCTCCT
CCCCGGCCTCCTCCTCCTCCTCCTCCCCTTCCTCGCCATTGCCTGCTTCT
GGCACCGGCCCATCATCCGTCGCTCCAAACTTGGACATTTCCTACTCCAG
CGCCGGCTCGCCTCCGTCCTTCCCCCCTCCCTCCCTCCCTCGCCGCCTCC
ACCAGCACCATGCCTGCCTCCCTCGCGCCCTCCTCCTGGGGGTCCACACG
CCTGGGGCCCATATGCCTGGAGCTGACGACGCTGGCCCTGCTGGCTGCGC
TTGGGCGCGGCTGGTTCGAAGGCGGGAGGGAGGCAGGGCAGGACGTGCAA
CGGGCGGCAGCAGTGGCAACCGGCAGAGTGGCGCTGACGGTGATGATGCT
CGTGACGCTACCGGTCGCTAGGACGAGTGTGTGGCTGTGGGCGACGG GTA
AGAACCCTCCCGCCCGCCCTCCCTCCCTCCCTCCCTCCCTTCTCGCCAGC
GTGCTTTTTGTGGACGGAAAAAATAATTTCTCACCCGCCCTTTCCATCTG
TCTGCCCTCCTTCCTTCCCTCCTCCCGCCCTCCTTCTCTCCCTTGCCTCC
CTCCAGGCATTCCCTTTGAGCGCGCCCTCGCCTTTCACAAGCGCTTGGGC
CGTCTCCTCTTGGTCGTGGCCTCCGTCCATCTCGGCTTCTCCCTGTCTGT
AGCGCCGCTGAAG GTGGGCCGGGAAGGAGGGAGGGAGGGAGGGAGGGAAA
AGAGAGTAAAAGCACGACATAGAATTTGGGCTATCGCTGTAGGCTTATCC
TCATGTAGCCTGACGCCCTCTCCCGCCCTCCCTCCCACCCTCCCTCCCTC
CTTCCCTAGTGGGCACCCACCCTCCTCACGCCTGTGGCCACTGCATTCGG
CGTTACTGCCTACGCGGTGCTCTGCTTCCAGGCCCTGGCCGCCATCGAGG
TCGTGCGAAGGCGGGTCTTCGAGACCTTCCAG GTGGGGAGGGAGGGAGCA
AGGGAGGGAGGATGGGTGGGTGGGACGGAGGGACGGAGACTGCACAAAGG
AAGAATTAAATGAAGGAAGGAATGAATGAGTGAATGAAGCGCTGAAGTGT
ACCACATGGATCGTTCGTCTTAACACACGTCCTCCCTCCCTTACTCCCTC
CCTCACTACCTCCATAGGTCCTCCACATCCTCTCGGCCCTCGCCCTCTTC
CTCCTCGTCTTCCTCCACCTCCCCGCCCCCTCCTCCTACACCCCCTCCCT
CCCCTATTCCCTCCCCCTCCTCTACTTTTCTGTGCCTCTCGTCTGCCATG
CGTGTGACCTGGTCTACCGGCACGCCCGCACCTCCTCTCCCTCCCTCCCT
TCCTCGGCCTCCCTCCTCTTACTAGGCAAGGGGGAGGTGACCAAAATCTC
CGTGCGACTCGCCAGGCGGACAACGGGTTTGAG GTACGAGAAAGGAACAA
GAGGGAGGGAGGGATGGAAGGAGAGAGGGAGGCGAGGCCAGGGCTGGGTT
TCATTTGTCCCTCGCTGCAAATATCGGGCCAGTCAGATTCATCTCTTCCC
CCTCCCTCCTTCCCTCCCTCCCTCCTCCTGCCCTCCCTCTCTCCCTTTTT
CCCTTCTCCCGCCCACAGGAAAGCGGGCGAGTATTTTTTTATTCAATTTC
CAGGCCTGAGCCAGTGGGAGTGGCACCCTTACAGTGTCGCCTACAGCGAG
GAGGAGGAGGCAGAGGGAGGGGGGGATGACGAGGGGGAAGGAGGGGAGGT
AGCGACTTTCTTCGTCAAGGACTGCG GTAGGTTTTGGGGAGATCAGAGGG
AGGGAAGGGAGGAAGAGGGGGAAAAGTATGAGAGCCGGAGGTTACAGGAG
CGGCGGGTGAGGCGAGAAAGAAAAGAGGAAGGACGGAAGAGGGGAGGACG
GGAGGGCGAGTGGGAAGGACGACCGACTGACACTGATACGCGTGGTGGTG
ACTATTGGCATACGCACACACACACATCCACGCGTAATGATGATCATTTG
AGAGGATACACATGTACCTACGATTTACACACCATGCACGTATTTATCTG
CGACACAGGCGAAGGCTCATGGTCGCATCGCGTTCGGCTCTTGGCTGAGA
GCTTGTCCTCGGCTGATTCCCCTCAAAG GTACCCCTCCCTCCCTCCCTCC
TCCCCTCCCTTCCTCCCGCCCTCCCTTCCTCGAGATCACGAGTTTCTTAT
TCTCGCCCTCGACGGGCCCTATGATTGTCTCTCCATCTCACAATTCCTAC
CCCCGTCCCCCACTCCCTCCCCCCTATTCTAGAAGCAAGGAAGCTGTCAG
TATCGCCCTTGATGGCCCTTATGGCAGCCTCTCCATCATCCTGTCCGACT
ATTCGCACTTGCTGCTGGTAGGGGGAGGGATAGGCATCACACCTCTTACC
TCCACGCTACGGGCGCTGTACAAGCAG GTACGCCCTCCTTCTTTCCCACC
CTGGGCTGTCCGGAACCGCTGTCTATTTCTCACGTCCCACGGCCTTCCTC
TCTTCCCTCCCTCCCTCCCATCTTCCCTCCCTCCCTCCTTTTCTCAGTAC
CACTCCAAGCGTGGCCTTCCCCTCCTTCAATCCGTCACCCTTGTGTGGGT
TGTGAGAGATGCCACCCAAATCTCCTGGTTCGCGCCATTTCTCTCCAGCC
TTCTCCGTGAGCCCTCTTCCTCCCTCCCTTCCTCGTCGTCGTCGTCTTCT
TCGTCGTCCTCCTCCCTTTCCTCTACCTATGCGACTGCTACGGCCACTGC
TGCTGCCACTGCCGGTGCCGGTGTGGTGGAGGAAGGGAAGGAGTTCGCGG
ATGCCATTCCTTCCATCCGCCCCCGCTTTCCCCTCTCGCTTTGTCTGTAC
ATGTCGGACAGCTCTTCGAAAGGAAGAAATGGAGAGGGGGGGGAGGAGGA
AGGAAGGAAGGGAGGGATAGCACTAGTTAACCTGGATGCCCCTTCGCTTC
CCGTTGATGTGTATGAGAAGGGAAGGGAGGCAGCGGGAGGAGGGGGCTTG
CCATCTCTCCCCCCCTTCCTCCCTGGCCGACCCGATCTTCATAGGTTGCT
CGAGGCGTGGGGTAGTTCCCAAGTAGGAAAAAAAGGAGAAGGGGGGGAAG
GATGGAGGGAGGAAAGGAGGGGAGTGGTAGTGTGTGGGCCAGAGGGCATG
TCGCGGGAGGTGAGAGAGGCCGTGGACGGATCGAAGGGAAGGATGGATAT
GCACGAAGAAATGTTTAAGTGGTAG back to top Coding sequence (CDS) from alignment at chr21:793593..800168+
>NO21G02600.1 ID=NO21G02600.1|Name=NO21G02600.1|organism=Nannochloropsis oceanica|type=CDS|length=2994bp|location=Sequence derived from alignment at chr21:793593..800168+ (Nannochloropsis oceanica) back to top