NO21G02520.5, NO21G02520.5 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G02520.5
Unique NameNO21G02520.5
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2267
Alignment locationchr21:768098..771194 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:768098..771194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G02520.5 vs.
Match: KPL23390.1 (hypothetical protein AMJ75_06185 [Phycisphaerae bacterium SM1_79])

HSP 1 Score: 206.1 bits (523), Expect = 2.100e-49
Identity = 134/383 (34.99%), Postives = 185/383 (48.30%), Query Frame = 0 
Query:   17 NRSENLAMAMHGFTFLKDRMWDRANGGFVWRVAADGKTVVEGTFKDLYGQAFGLYALSYYYMATGDREALAMASQLFDLLYTRCHDTTHGGFFEAPFNDWSLDPAHFQGAIQRRSP-KTINTHLHLLESLVAFHRALKEGGREEGMKGGSFEEEEKEGRGEDGREGRVETVIRELIALVTGKMLIDPPGTVVEFYASDWTP--DDTPNLLLFGHVNELLWLVVDACESLDIRLSSLP-PSFLSSLWIYSTTYGFDQTQGAFQNQRVLETEKPLLQPLLQPSLPFAQDDD---KVWWVQAESLIAAAKYSRIDRGEGGGEGGIEAGEAFGALLKYLNGTMIDWERGEWFAEV-KEGRKEGGKANEWKGPYHNGRAMILCLEELR 392
            +R E+L  A  G+ FLK++MWD  NGGF W V   G   ++   K LYGQAF LYA+S YYMA   R+    A Q F+LL  +CHD  +GG+ E+   DW+  P +    +   S  K +NTHLHLLE+L AF+R  K     E                           + ELI + +  ++    G   + Y  DWTP  D     + +GH  E +WL++DAC    +  S+ P      +L+ YS  YG+DQ  G F +                 S PF +  D   KVWWVQAE+L++      + +         +    F     ++   M+DW+ GEW A +  EG K+G KAN WK  YHNGRAMI CL  L+
Sbjct:   77 SRKEHLKAADLGYRFLKEKMWDSKNGGFYWEVDVSGSKKLKPR-KHLYGQAFALYAISEYYMACKRRDVSDFAIQFFNLLEEKCHDGKYGGYIESFDEDWTPLPDNELSYMGVESGLKLMNTHLHLLEALTAFYRTSKLPLARER--------------------------LLELIRIQSNAVVRKDLGVCTDKYERDWTPRLDGDYARVSYGHDLENIWLLIDACNVAGV--SNYPLLDLYKALFDYSLKYGYDQVNGGFYD-----------------SGPFNKTADRRAKVWWVQAEALVSPLYMYELTQ-------DTKYLSVFEKTYDFIEKNMVDWQNGEWHANITPEGHKQGDKANVWKAGYHNGRAMIECLTMLK 406
The following BLAST results are available for this feature:
BLAST of NO21G02520.5 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
KPL23390.12.100e-4934.99hypothetical protein AMJ75_06185 [Phycisphaerae ba... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G02520NO21G02520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G02520.5NO21G02520.5-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G02520.5.cds1NO21G02520.5.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02520.5.cds2NO21G02520.5.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02520.5.cds3NO21G02520.5.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02520.5.cds4NO21G02520.5.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02520.5.cds5NO21G02520.5.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02520.5.cds6NO21G02520.5.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02520.5.cds7NO21G02520.5.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G02520.5 ID=NO21G02520.5|Name=NO21G02520.5|organism=Nannochloropsis oceanica|type=mRNA|length=2267bp
CCTTCCTCCCTCCCTCCTTACCCCCTCCCTCCCTCCCACCTTCCATTTTG
CCCTTCTCCATATCCTTTCCATTTCCATTCTTTTTCCCGCAGGCACGCAT
CACCTGGTTTTTTTCCCGCCTTCTCCTCTTCGAAGCCGACGAGAAGGAGG
GAGGAAAGGAGAGCGGGAAGGACGGCGGACAAAACCGTGAGGGCATGACT
GAGGGAGAGAATAAGGGAAAGAGGGAGGGAGGGCTGAAGAGTAACAGGAG
CGAAAACCTGGCAATGGCCATGCATGGCTTTACATTCTTGAAGGACAGGA
TGTGGGACCGTGCGAACGGGGGCTTCGTCTGGCGGGTGGCGGCGGACGGG
AAGACGGTGGTGGAGGGTACCTTCAAGGATCTGTACGGGCAAGCGTTTGG
TTTGTACGCTCTTTCGTACTATTATATGGCCACGGGGGATAGGGAGGCCT
TGGCAATGGCCTCCCAGCTGTTTGACCTGCTGTATACGAGGTGCCACGAC
ACCACGCATGGAGGTTTCTTTGAAGCACCCTTCAATGACTGGTCTCTCGA
TCCTGCCCATTTCCAAGGCGCCATCCAGAGACGCTCTCCCAAGACCATTA
ACACCCACCTCCACCTCCTGGAGTCGTTGGTGGCTTTCCACAGGGCGCTA
AAAGAGGGAGGGAGGGAGGAAGGGATGAAAGGCGGATCATTCGAGGAGGA
AGAGAAGGAAGGGAGGGGTGAAGATGGGAGGGAGGGGAGGGTAGAGACGG
TCATCCGTGAGCTGATCGCCTTGGTGACGGGGAAAATGCTGATAGATCCT
CCAGGCACTGTTGTCGAGTTTTATGCCAGCGACTGGACTCCGGACGACAC
TCCCAACCTCCTCCTCTTTGGCCACGTGAACGAGCTGCTCTGGTTGGTGG
TGGATGCCTGCGAGTCTTTGGACATCCGCCTATCCTCCCTCCCTCCCTCT
TTCCTCTCCTCCCTTTGGATTTATTCCACCACTTATGGCTTCGATCAGAC
TCAGGGCGCCTTTCAAAATCAACGAGTGCTAGAAACCGAAAAGCCCCTCC
TCCAGCCCCTCCTCCAGCCCTCCCTCCCTTTCGCACAAGACGATGACAAG
GTGTGGTGGGTCCAGGCCGAAAGTCTCATCGCCGCCGCCAAGTACAGCAG
AATCGACAGAGGGGAGGGAGGGGGAGAGGGCGGGATCGAGGCAGGGGAGG
CGTTTGGGGCCCTGCTGAAGTACTTGAACGGGACGATGATTGATTGGGAG
AGGGGAGAGTGGTTCGCGGAGGTGAAGGAGGGAAGAAAGGAGGGGGGGAA
GGCGAACGAGTGGAAGGGTCCATATCACAACGGGCGTGCGATGATTCTGT
GTCTAGAGGAATTGCGAGGGAGGAAAACTTAGGCTTGTATTCAAATGACG
GAGAAGGAGCATTGGATAGAAAAGGGGAGGGGGGAAAGGAGGGAGGGTGG
TCCTGGTAGTTCTTGTCAATAGTAGCTATGTGTACACATGCACGCCCTTG
CTTGCTTGCTTTTTGCGCATGTTTATGGCTTTAAATACTTAACTTAATTC
TTTTATATCTTTTGGTTTAATCCGTACCTACATCCAATGCCGATGCAGTC
ACGGCGTAGAACAAAGTCCACCCTACTTCTAAGAGTCGCGGTATTTCCTG
CCAAAGTATCTCTCGAATAACTATGTCCATATGGTCAATCCCGTATCCTG
GCGCTGGTCTTTTCCCTTTGGATTGCTTCTTGAATTTTGTCTTATCCTGT
TGTCGAGAACACTCACCTCTTTAGCATTGCACTACCACTTGGAGAAGCTC
CTCTCATCCTCTTCATTTACTCCTTGCGTCGCCCCAAAAAGAATGTGGCA
CCCACCGCTTCAAGGCTGGCATGTGCCTTCATAAATTCGTGAAGCTGAAA
TCCTCGGCGGCGATCCGGTATATCGACAGCACCTTCCTCCAAAATACCAC
CGTGCTGCTCCAGAAGCAAGACGAAATAACGATGCAACCCCGTGCCCCCT
GGAAAGGATGAAGGAGACATGTAATGCATAATCACGTCCCCCACGCTACT
GTCACCCTCAGAGCTTGGAATATTCGCTGTGAGCATCAATAGCAGGGCGC
GATCCGTGGCCTGATGGATGGAGGGGAAATCCGCATCTACAATCACCACC
GTATAGAATGACTGATCCTTTTCACTGTCAAAGGTTATGACGGGCGTGGT
ATCAGCTACAGCGGAAGGCACTTCATCCCCTGCACACACAGTCTCTCCAT
TGAATCTCAGTAAGAGG
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protein sequence of NO21G02520.5

>NO21G02520.5-protein ID=NO21G02520.5-protein|Name=NO21G02520.5|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MTEGENKGKREGGLKSNRSENLAMAMHGFTFLKDRMWDRANGGFVWRVAA
DGKTVVEGTFKDLYGQAFGLYALSYYYMATGDREALAMASQLFDLLYTRC
HDTTHGGFFEAPFNDWSLDPAHFQGAIQRRSPKTINTHLHLLESLVAFHR
ALKEGGREEGMKGGSFEEEEKEGRGEDGREGRVETVIRELIALVTGKMLI
DPPGTVVEFYASDWTPDDTPNLLLFGHVNELLWLVVDACESLDIRLSSLP
PSFLSSLWIYSTTYGFDQTQGAFQNQRVLETEKPLLQPLLQPSLPFAQDD
DKVWWVQAESLIAAAKYSRIDRGEGGGEGGIEAGEAFGALLKYLNGTMID
WERGEWFAEVKEGRKEGGKANEWKGPYHNGRAMILCLEELRGRKT*
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mRNA from alignment at chr21:768098..771194+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02520.5 ID=NO21G02520.5|Name=NO21G02520.5|organism=Nannochloropsis oceanica|type=mRNA|length=3097bp|location=Sequence derived from alignment at chr21:768098..771194+ (Nannochloropsis oceanica)
CCTTCCTCCCTCCCTCCTTACCCCCTCCCTCCCTCCCACCTTCCATTTTG
CCCTTCTCCATATCCTTTCCATTTCCATTCTTTTTCCCGCAGGCACGCAT
CACCTGGTTTTTTTCCCGCCTTCTCCTCTTCGAAGCCGACGAGAAGGAGG
GAGGAAAGGAGAGCGGGAAGGACGGCGGACAAAACCGTGAGGGCATGACT
GAGGGAGAGAATAAGGGAAAGAGGGAGGGAGGGCTGAAGAGTAACAGGAG
CGAAAACCTGGCAATGGCCATGCATGGCTTTACATTCTTGAAGGACAGGA
TGTGGGACCGTGCGAACGGGGGCTTCGTCTGGCGGGTGGCGGCGGACGGG
AAGACGGTGGTGGAGGTAGGTAGGTAGGGAGGGAGGGAGGGAGGGGGGGA
GGAGGGGCATAATTTGCCCAGCGTGTCTGACTATTCGTTCTTCCTTCTTA
TGTAGGGTACCTTCAAGGATCTGTACGGGCAAGCGTTTGGTTTGTACGCT
CTTTCGTACTATTATATGGCCACGGGGGATAGGGAGGCCTTGGCAATGGC
CTCCCAGCTGTTTGACCTGCTGTATACGAGGTGAGGGAGGGATGGAGGAA
GGTAGAGAGGGGAAGAAGGAAGAAGAGATTAGTTGGCTTATGAGAGGGAA
AGAAGGGAGGGGGGGAGGGAGGGAGGGAGGGAGGGAGGATTATGTCTGAC
GCAATGCCATGACACCCTCCATCCCAAAGGTGCCACGACACCACGCATGG
AGGTTTCTTTGAAGCACCCTTCAATGACTGGTACGCGGCGGACATACACT
TGTCGCCTCCCTTCCTTCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCC
GTCCCTCCCTTCCCAACCCCAGGTTCTCCCTTCCTCCCTCCCTCCCTCGC
ATGCCTTCCCTCCCTTCTCAGGTCTCTCGATCCTGCCCATTTCCAAGGCG
CCATCCAGAGACGCTCTCCCAAGACCATTAACACCCACCTCCACCTCCTG
GAGTCGTTGGTGGCTTTCCACAGGGCGCTAAAAGAGGGAGGGAGGGAGGA
AGGGATGAAAGGCGGATCATTCGAGGAGGAAGAGAAGGAAGGGAGGGGTG
AAGATGGGAGGGAGGGGAGGGTAGAGACGGTCATCCGTGAGCTGATCGCC
TTGGTGACGGGGAAAATGCTGATAGATCCTCCAGGTAGGAAGGGAGGGAG
GGAGGGAGGGAAAGAGGGCGGACAGAGGAGCCAGACCAAGGGGTAAGTAA
TAATCTCCACCCTGCTTATGCATGCCTCCTTCCCTTTCCCCCTCTTCCCT
TCTTCAATCCCTCCTTCCTTCAGGCACTGTTGTCGAGTTTTATGCCAGCG
ACTGGACTCCGGACGACACTCCCAACCTCCTCCTCTTTGGCCACGTGAAC
GAGCTGCTCTGGTTGGTGGTGGATGCCTGCGAGGTATGTCACTCCTTCTA
ACGTTCACCCTCTCCCTGGCTCCCTCCCTCCCTCGGCTTTTATGGCTTAC
GCACCACCGTTGAACCTCTTCCTCCCTCCCTCTCTTTTTCCTTCTTCCAT
CTTTCCCTCCCTCAGTCTTTGGACATCCGCCTATCCTCCCTCCCTCCCTC
TTTCCTCTCCTCCCTTTGGATTTATTCCACCACTTATGGCTTCGATCAGA
CTCAGGGCGCCTTTCAAAATCAACGAGTGCTAGAAACCGAAAAGGTGAGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGCGAGGGAGGGAGGGAGCGAG
GGAGGGAGGGAGGGAGAATGGGCTGACAGGAAGTGAACGATTCCATCAAT
CTCCAAGTTTTATTGACATCTTATTTAATGCGCCTCCATCACACCCTGGC
TCTCTTTTCTTCCATCCCTCCAGCCCCTCCTCCAGCCCCTCCTCCAGCCC
TCCCTCCCTTTCGCACAAGACGATGACAAGGTGTGGTGGGTCCAGGCCGA
AAGTCTCATCGCCGCCGCCAAGTACAGCAGAATCGACAGAGGGGAGGGAG
GGGGAGAGGGCGGGATCGAGGCAGGGGAGGCGTTTGGGGCCCTGCTGAAG
TACTTGAACGGGACGATGATTGATTGGGAGAGGGGAGAGTGGTTCGCGGA
GGTGAAGGAGGGAAGAAAGGAGGGGGGGAAGGCGAACGAGTGGAAGGGTC
CATATCACAACGGGCGTGCGATGATTCTGTGTCTAGAGGAATTGCGAGGG
AGGAAAACTTAGGCTTGTATTCAAATGACGGAGAAGGAGCATTGGATAGA
AAAGGGGAGGGGGGAAAGGAGGGAGGGTGGTCCTGGTAGTTCTTGTCAAT
AGTAGCTATGTGTACACATGCACGCCCTTGCTTGCTTGCTTTTTGCGCAT
GTTTATGGCTTTAAATACTTAACTTAATTCTTTTATATCTTTTGGTTTAA
TCCGTACCTACATCCAATGCCGATGCAGTCACGGCGTAGAACAAAGTCCA
CCCTACTTCTAAGAGTCGCGGTATTTCCTGCCAAAGTATCTCTCGAATAA
CTATGTCCATATGGTCAATCCCGTATCCTGGCGCTGGTCTTTTCCCTTTG
GATTGCTTCTTGAATTTTGTCTTATCCTGTTGTCGAGAACACTCACCTCT
TTAGCATTGCACTACCACTTGGAGAAGCTCCTCTCATCCTCTTCATTTAC
TCCTTGCGTCGCCCCAAAAAGAATGTGGCACCCACCGCTTCAAGGCTGGC
ATGTGCCTTCATAAATTCGTGAAGCTGAAATCCTCGGCGGCGATCCGGTA
TATCGACAGCACCTTCCTCCAAAATACCACCGTGCTGCTCCAGAAGCAAG
ACGAAATAACGATGCAACCCCGTGCCCCCTGGAAAGGATGAAGGAGACAT
GTAATGCATAATCACGTCCCCCACGCTACTGTCACCCTCAGAGCTTGGAA
TATTCGCTGTGAGCATCAATAGCAGGGCGCGATCCGTGGCCTGATGGATG
GAGGGGAAATCCGCATCTACAATCACCACCGTATAGAATGACTGATCCTT
TTCACTGTCAAAGGTTATGACGGGCGTGGTATCAGCTACAGCGGAAGGCA
CTTCATCCCCTGCACACACAGTCTCTCCATTGAATCTCAGTAAGAGG
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Coding sequence (CDS) from alignment at chr21:768098..771194+

>NO21G02520.5 ID=NO21G02520.5|Name=NO21G02520.5|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at chr21:768098..771194+ (Nannochloropsis oceanica)
ATGACTGAGGGAGAGAATAAGGGAAAGAGGGAGGGAGGGCTGAAGAGTAA
CAGGAGCGAAAACCTGGCAATGGCCATGCATGGCTTTACATTCTTGAAGG
ACAGGATGTGGGACCGTGCGAACGGGGGCTTCGTCTGGCGGGTGGCGGCG
GACGGGAAGACGGTGGTGGAGGGTACCTTCAAGGATCTGTACGGGCAAGC
GTTTGGTTTGTACGCTCTTTCGTACTATTATATGGCCACGGGGGATAGGG
AGGCCTTGGCAATGGCCTCCCAGCTGTTTGACCTGCTGTATACGAGGTGC
CACGACACCACGCATGGAGGTTTCTTTGAAGCACCCTTCAATGACTGGTC
TCTCGATCCTGCCCATTTCCAAGGCGCCATCCAGAGACGCTCTCCCAAGA
CCATTAACACCCACCTCCACCTCCTGGAGTCGTTGGTGGCTTTCCACAGG
GCGCTAAAAGAGGGAGGGAGGGAGGAAGGGATGAAAGGCGGATCATTCGA
GGAGGAAGAGAAGGAAGGGAGGGGTGAAGATGGGAGGGAGGGGAGGGTAG
AGACGGTCATCCGTGAGCTGATCGCCTTGGTGACGGGGAAAATGCTGATA
GATCCTCCAGGCACTGTTGTCGAGTTTTATGCCAGCGACTGGACTCCGGA
CGACACTCCCAACCTCCTCCTCTTTGGCCACGTGAACGAGCTGCTCTGGT
TGGTGGTGGATGCCTGCGAGTCTTTGGACATCCGCCTATCCTCCCTCCCT
CCCTCTTTCCTCTCCTCCCTTTGGATTTATTCCACCACTTATGGCTTCGA
TCAGACTCAGGGCGCCTTTCAAAATCAACGAGTGCTAGAAACCGAAAAGC
CCCTCCTCCAGCCCCTCCTCCAGCCCTCCCTCCCTTTCGCACAAGACGAT
GACAAGGTGTGGTGGGTCCAGGCCGAAAGTCTCATCGCCGCCGCCAAGTA
CAGCAGAATCGACAGAGGGGAGGGAGGGGGAGAGGGCGGGATCGAGGCAG
GGGAGGCGTTTGGGGCCCTGCTGAAGTACTTGAACGGGACGATGATTGAT
TGGGAGAGGGGAGAGTGGTTCGCGGAGGTGAAGGAGGGAAGAAAGGAGGG
GGGGAAGGCGAACGAGTGGAAGGGTCCATATCACAACGGGCGTGCGATGA
TTCTGTGTCTAGAGGAATTGCGAGGGAGGAAAACTTAG
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Synonyms
Publications