|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr21 | genome | chr21:767421..771194 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G02520.4 vs.
Match: KPL23390.1 (hypothetical protein AMJ75_06185 [Phycisphaerae bacterium SM1_79]) HSP 1 Score: 213.8 bits (543), Expect = 1.200e-51 Identity = 157/484 (32.44%), Postives = 214/484 (44.21%), Query Frame = 0
Query: 34 YIDRLERILYTNIRPWWLGNSVVDLENGGFNLNHDINGNYLGPAPKMIVTQARITWFFSRLLLFEADEKEGGKESGKDGGQNREGMTEGENKGKREGGLKSNRSENLAMAMHGFTFLKDRMWDRANGGFVWRVAADGKTVVEGTFKDLYGQAFGLYALSYYYMATGDREALAMASQLFDLLYTRSLDPAHFQGAIQ-------------------RRSPKTINTHLHLLESLVAFHRALKEGGREEGMKGGSFEEEEKEGRGEDGREGRVETVIRELIALVTGKMLIDPPGTVVEFYASDWTP--DDTPNLLLFGHVNELLWLVVDACESLDIRLSSLPPSFLSSLWIYSTTYGFDQTQGAFQNQRVLETEKPLLQPLLQPSLPFAQDDD---KVWWVQAESLIAAAKYSRIDRGEGGGEGGIEAGEAFGALLKYLNGTMIDWERGEWFAEVK-EGRKEGGKANEWKGPYHNGRAMILCLEELR 493
+I RLE++L NI +W S+ DLENGG+ + NG KMIVTQ+RI W +SRL +DG +R E+L A G+ FLK++MWD NGGF W V G ++ K LYGQAF LYA+S YYMA R+ A Q F+LL + D + G I+ K +NTHLHLLE+L AF+R K E + ELI + + ++ G + Y DWTP D + +GH E +WL++DAC + L + +L+ YS YG+DQ G F + S PF + D KVWWVQAE+L++ + + + F ++ M+DW+ GEW A + EG K+G KAN WK YHNGRAMI CL L+
Sbjct: 12 HIPRLEKVLKENIISFWDARSL-DLENGGYIIGFGPNGERKEQITKMIVTQSRIVWLYSRL--------------ARDG---------------------YSRKEHLKAADLGYRFLKEKMWDSKNGGFYWEVDVSGSKKLKPR-KHLYGQAFALYAISEYYMACKRRDVSDFAIQFFNLLEEKCHD-GKYGGYIESFDEDWTPLPDNELSYMGVESGLKLMNTHLHLLEALTAFYRTSKLPLARERLL--------------------------ELIRIQSNAVVRKDLGVCTDKYERDWTPRLDGDYARVSYGHDLENIWLLIDACNVAGVSNYPLLDLY-KALFDYSLKYGYDQVNGGFYD-----------------SGPFNKTADRRAKVWWVQAEALVSPLYMYELTQDT-------KYLSVFEKTYDFIEKNMVDWQNGEWHANITPEGHKQGDKANVWKAGYHNGRAMIECLTMLK 406
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO21G02520.4 ID=NO21G02520.4|Name=NO21G02520.4|organism=Nannochloropsis oceanica|type=mRNA|length=2622bp ACAGGGTTGATAGCACAGAAAGCATGCAAAGAATAAAGAGAAAAAAACTC CGAGCCTCCACCTGTCCTGCCGTTCCCAGTAGCACTCTCCTCCTCCTCCT GGTGTCCTCCCTACTCCTTGGTGTCCCTGCCCATGTTTCTGCTACTACAC CTACCAGCGCCACCACCACCACACCTCTTGATTCGGAAATGATGAGAGGA CAAGAAGAAGAGCAAGAGCAACGGTACATTTTTTGGAACCTTCTTAATGG TCTTTACGGCTGATCAATCACCATCTCCTTTCCTCCCTCCCTCCCCTCTC TCCAGCCTTGCCTTCCCGAGCCTCTCAACGAACCAGCGACAGGAATACAT AGACCGATTGGAACGTATTCTCTACACTAATATTCGTCCGTGGTGGCTTG GCAACAGCGTGGTGGACTTGGAGAATGGAGGTTTCAACCTCAACCATGAC ATCAATGGGAACTACCTTGGCCCTGCTCCCAAAATGATCGTTACCCAGGC ACGCATCACCTGGTTTTTTTCCCGCCTTCTCCTCTTCGAAGCCGACGAGA AGGAGGGAGGAAAGGAGAGCGGGAAGGACGGCGGACAAAACCGTGAGGGC ATGACTGAGGGAGAGAATAAGGGAAAGAGGGAGGGAGGGCTGAAGAGTAA CAGGAGCGAAAACCTGGCAATGGCCATGCATGGCTTTACATTCTTGAAGG ACAGGATGTGGGACCGTGCGAACGGGGGCTTCGTCTGGCGGGTGGCGGCG GACGGGAAGACGGTGGTGGAGGGTACCTTCAAGGATCTGTACGGGCAAGC GTTTGGTTTGTACGCTCTTTCGTACTATTATATGGCCACGGGGGATAGGG AGGCCTTGGCAATGGCCTCCCAGCTGTTTGACCTGCTGTATACGAGGTCT CTCGATCCTGCCCATTTCCAAGGCGCCATCCAGAGACGCTCTCCCAAGAC CATTAACACCCACCTCCACCTCCTGGAGTCGTTGGTGGCTTTCCACAGGG CGCTAAAAGAGGGAGGGAGGGAGGAAGGGATGAAAGGCGGATCATTCGAG GAGGAAGAGAAGGAAGGGAGGGGTGAAGATGGGAGGGAGGGGAGGGTAGA GACGGTCATCCGTGAGCTGATCGCCTTGGTGACGGGGAAAATGCTGATAG ATCCTCCAGGCACTGTTGTCGAGTTTTATGCCAGCGACTGGACTCCGGAC GACACTCCCAACCTCCTCCTCTTTGGCCACGTGAACGAGCTGCTCTGGTT GGTGGTGGATGCCTGCGAGTCTTTGGACATCCGCCTATCCTCCCTCCCTC CCTCTTTCCTCTCCTCCCTTTGGATTTATTCCACCACTTATGGCTTCGAT CAGACTCAGGGCGCCTTTCAAAATCAACGAGTGCTAGAAACCGAAAAGCC CCTCCTCCAGCCCCTCCTCCAGCCCTCCCTCCCTTTCGCACAAGACGATG ACAAGGTGTGGTGGGTCCAGGCCGAAAGTCTCATCGCCGCCGCCAAGTAC AGCAGAATCGACAGAGGGGAGGGAGGGGGAGAGGGCGGGATCGAGGCAGG GGAGGCGTTTGGGGCCCTGCTGAAGTACTTGAACGGGACGATGATTGATT GGGAGAGGGGAGAGTGGTTCGCGGAGGTGAAGGAGGGAAGAAAGGAGGGG GGGAAGGCGAACGAGTGGAAGGGTCCATATCACAACGGGCGTGCGATGAT TCTGTGTCTAGAGGAATTGCGAGGGAGGAAAACTTAGGCTTGTATTCAAA TGACGGAGAAGGAGCATTGGATAGAAAAGGGGAGGGGGGAAAGGAGGGAG GGTGGTCCTGGTAGTTCTTGTCAATAGTAGCTATGTGTACACATGCACGC CCTTGCTTGCTTGCTTTTTGCGCATGTTTATGGCTTTAAATACTTAACTT AATTCTTTTATATCTTTTGGTTTAATCCGTACCTACATCCAATGCCGATG CAGTCACGGCGTAGAACAAAGTCCACCCTACTTCTAAGAGTCGCGGTATT TCCTGCCAAAGTATCTCTCGAATAACTATGTCCATATGGTCAATCCCGTA TCCTGGCGCTGGTCTTTTCCCTTTGGATTGCTTCTTGAATTTTGTCTTAT CCTGTTGTCGAGAACACTCACCTCTTTAGCATTGCACTACCACTTGGAGA AGCTCCTCTCATCCTCTTCATTTACTCCTTGCGTCGCCCCAAAAAGAATG TGGCACCCACCGCTTCAAGGCTGGCATGTGCCTTCATAAATTCGTGAAGC TGAAATCCTCGGCGGCGATCCGGTATATCGACAGCACCTTCCTCCAAAAT ACCACCGTGCTGCTCCAGAAGCAAGACGAAATAACGATGCAACCCCGTGC CCCCTGGAAAGGATGAAGGAGACATGTAATGCATAATCACGTCCCCCACG CTACTGTCACCCTCAGAGCTTGGAATATTCGCTGTGAGCATCAATAGCAG GGCGCGATCCGTGGCCTGATGGATGGAGGGGAAATCCGCATCTACAATCA CCACCGTATAGAATGACTGATCCTTTTCACTGTCAAAGGTTATGACGGGC GTGGTATCAGCTACAGCGGAAGGCACTTCATCCCCTGCACACACAGTCTC TCCATTGAATCTCAGTAAGAGG back to topprotein sequence of NO21G02520.4 >NO21G02520.4-protein ID=NO21G02520.4-protein|Name=NO21G02520.4|organism=Nannochloropsis oceanica|type=polypeptide|length=497bp MVFTADQSPSPFLPPSPLSSLAFPSLSTNQRQEYIDRLERILYTNIRPWW LGNSVVDLENGGFNLNHDINGNYLGPAPKMIVTQARITWFFSRLLLFEAD EKEGGKESGKDGGQNREGMTEGENKGKREGGLKSNRSENLAMAMHGFTFL KDRMWDRANGGFVWRVAADGKTVVEGTFKDLYGQAFGLYALSYYYMATGD REALAMASQLFDLLYTRSLDPAHFQGAIQRRSPKTINTHLHLLESLVAFH RALKEGGREEGMKGGSFEEEEKEGRGEDGREGRVETVIRELIALVTGKML IDPPGTVVEFYASDWTPDDTPNLLLFGHVNELLWLVVDACESLDIRLSSL PPSFLSSLWIYSTTYGFDQTQGAFQNQRVLETEKPLLQPLLQPSLPFAQD DDKVWWVQAESLIAAAKYSRIDRGEGGGEGGIEAGEAFGALLKYLNGTMI DWERGEWFAEVKEGRKEGGKANEWKGPYHNGRAMILCLEELRGRKT* back to topmRNA from alignment at chr21:767421..771194+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO21G02520.4 ID=NO21G02520.4|Name=NO21G02520.4|organism=Nannochloropsis oceanica|type=mRNA|length=3774bp|location=Sequence derived from alignment at chr21:767421..771194+ (Nannochloropsis oceanica) ACAGGGTTGATAGCACAGAAAGCATGCAAAGAATAAAGAGAAAAAAACTC
CGAGCCTCCACCTGTCCTGCCGTTCCCAGTAGCACTCTCCTCCTCCTCCT
GGTGTCCTCCCTACTCCTTGGTGTCCCTGCCCATGTTTCTGCTACTACAC
CTACCAGCGCCACCACCACCACACCTCTTGATTCGGAAATGATGAGAGGA
CAAGAAGAAGAGCAAGAGCAACGGTACATTTTTTGGAACCTTCTTAATGG
TCTTTACGGCTGATCAATCACCATCTCCTTTCCTCCCTCCCTCCCCTCTC
TCCAGCCTTGCCTTCCCGAGCCTCTCAACGAACCAGCGACAGGAATACAT
AGACCGATTGGAACGTATTCTCTACACTAATATTCGTCCGTGGTGGCTTG
GCAACAGCGTGGTGGACTTGGAGAATGGTATGCGGGAAAAGGGAGGGAGG
GAGGGAGGGCGGGCGGAGGGAAGGAGGGAGGGAGCAACTCAACACCATCC
GAACACGAAAGCGGAGGAATGGCGGGGCATCCCAGCACTCTATCTCATAT
GGACACATGTACACACATACATATATGACCAGGAGGTTTCAACCTCAACC
ATGACATCAATGGGAACTACCTTGGCCCTGCTCCCAAAATGATCGTTACC
CAGGTGCGTTCCTCTTCTCCCTCCTTCCCTTCCTCCCTCCCTCCTTACCC
CCTCCCTCCCTCCCACCTTCCATTTTGCCCTTCTCCATATCCTTTCCATT
TCCATTCTTTTTCCCGCAGGCACGCATCACCTGGTTTTTTTCCCGCCTTC
TCCTCTTCGAAGCCGACGAGAAGGAGGGAGGAAAGGAGAGCGGGAAGGAC
GGCGGACAAAACCGTGAGGGCATGACTGAGGGAGAGAATAAGGGAAAGAG
GGAGGGAGGGCTGAAGAGTAACAGGAGCGAAAACCTGGCAATGGCCATGC
ATGGCTTTACATTCTTGAAGGACAGGATGTGGGACCGTGCGAACGGGGGC
TTCGTCTGGCGGGTGGCGGCGGACGGGAAGACGGTGGTGGAGGTAGGTAG
GTAGGGAGGGAGGGAGGGAGGGGGGGAGGAGGGGCATAATTTGCCCAGCG
TGTCTGACTATTCGTTCTTCCTTCTTATGTAGGGTACCTTCAAGGATCTG
TACGGGCAAGCGTTTGGTTTGTACGCTCTTTCGTACTATTATATGGCCAC
GGGGGATAGGGAGGCCTTGGCAATGGCCTCCCAGCTGTTTGACCTGCTGT
ATACGAGGTGAGGGAGGGATGGAGGAAGGTAGAGAGGGGAAGAAGGAAGA
AGAGATTAGTTGGCTTATGAGAGGGAAAGAAGGGAGGGGGGGAGGGAGGG
AGGGAGGGAGGGAGGATTATGTCTGACGCAATGCCATGACACCCTCCATC
CCAAAGGTGCCACGACACCACGCATGGAGGTTTCTTTGAAGCACCCTTCA
ATGACTGGTACGCGGCGGACATACACTTGTCGCCTCCCTTCCTTCCTCTC
TCCCTCCCTCCCTCCCTCCCTCCCTCCGTCCCTCCCTTCCCAACCCCAGG
TTCTCCCTTCCTCCCTCCCTCCCTCGCATGCCTTCCCTCCCTTCTCAGGT
CTCTCGATCCTGCCCATTTCCAAGGCGCCATCCAGAGACGCTCTCCCAAG
ACCATTAACACCCACCTCCACCTCCTGGAGTCGTTGGTGGCTTTCCACAG
GGCGCTAAAAGAGGGAGGGAGGGAGGAAGGGATGAAAGGCGGATCATTCG
AGGAGGAAGAGAAGGAAGGGAGGGGTGAAGATGGGAGGGAGGGGAGGGTA
GAGACGGTCATCCGTGAGCTGATCGCCTTGGTGACGGGGAAAATGCTGAT
AGATCCTCCAGGTAGGAAGGGAGGGAGGGAGGGAGGGAAAGAGGGCGGAC
AGAGGAGCCAGACCAAGGGGTAAGTAATAATCTCCACCCTGCTTATGCAT
GCCTCCTTCCCTTTCCCCCTCTTCCCTTCTTCAATCCCTCCTTCCTTCAG
GCACTGTTGTCGAGTTTTATGCCAGCGACTGGACTCCGGACGACACTCCC
AACCTCCTCCTCTTTGGCCACGTGAACGAGCTGCTCTGGTTGGTGGTGGA
TGCCTGCGAGGTATGTCACTCCTTCTAACGTTCACCCTCTCCCTGGCTCC
CTCCCTCCCTCGGCTTTTATGGCTTACGCACCACCGTTGAACCTCTTCCT
CCCTCCCTCTCTTTTTCCTTCTTCCATCTTTCCCTCCCTCAGTCTTTGGA
CATCCGCCTATCCTCCCTCCCTCCCTCTTTCCTCTCCTCCCTTTGGATTT
ATTCCACCACTTATGGCTTCGATCAGACTCAGGGCGCCTTTCAAAATCAA
CGAGTGCTAGAAACCGAAAAGGTGAGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGCGAGGGAGGGAGGGAGCGAGGGAGGGAGGGAGGGAGAATGGGC
TGACAGGAAGTGAACGATTCCATCAATCTCCAAGTTTTATTGACATCTTA
TTTAATGCGCCTCCATCACACCCTGGCTCTCTTTTCTTCCATCCCTCCAG
CCCCTCCTCCAGCCCCTCCTCCAGCCCTCCCTCCCTTTCGCACAAGACGA
TGACAAGGTGTGGTGGGTCCAGGCCGAAAGTCTCATCGCCGCCGCCAAGT
ACAGCAGAATCGACAGAGGGGAGGGAGGGGGAGAGGGCGGGATCGAGGCA
GGGGAGGCGTTTGGGGCCCTGCTGAAGTACTTGAACGGGACGATGATTGA
TTGGGAGAGGGGAGAGTGGTTCGCGGAGGTGAAGGAGGGAAGAAAGGAGG
GGGGGAAGGCGAACGAGTGGAAGGGTCCATATCACAACGGGCGTGCGATG
ATTCTGTGTCTAGAGGAATTGCGAGGGAGGAAAACTTAGGCTTGTATTCA
AATGACGGAGAAGGAGCATTGGATAGAAAAGGGGAGGGGGGAAAGGAGGG
AGGGTGGTCCTGGTAGTTCTTGTCAATAGTAGCTATGTGTACACATGCAC
GCCCTTGCTTGCTTGCTTTTTGCGCATGTTTATGGCTTTAAATACTTAAC
TTAATTCTTTTATATCTTTTGGTTTAATCCGTACCTACATCCAATGCCGA
TGCAGTCACGGCGTAGAACAAAGTCCACCCTACTTCTAAGAGTCGCGGTA
TTTCCTGCCAAAGTATCTCTCGAATAACTATGTCCATATGGTCAATCCCG
TATCCTGGCGCTGGTCTTTTCCCTTTGGATTGCTTCTTGAATTTTGTCTT
ATCCTGTTGTCGAGAACACTCACCTCTTTAGCATTGCACTACCACTTGGA
GAAGCTCCTCTCATCCTCTTCATTTACTCCTTGCGTCGCCCCAAAAAGAA
TGTGGCACCCACCGCTTCAAGGCTGGCATGTGCCTTCATAAATTCGTGAA
GCTGAAATCCTCGGCGGCGATCCGGTATATCGACAGCACCTTCCTCCAAA
ATACCACCGTGCTGCTCCAGAAGCAAGACGAAATAACGATGCAACCCCGT
GCCCCCTGGAAAGGATGAAGGAGACATGTAATGCATAATCACGTCCCCCA
CGCTACTGTCACCCTCAGAGCTTGGAATATTCGCTGTGAGCATCAATAGC
AGGGCGCGATCCGTGGCCTGATGGATGGAGGGGAAATCCGCATCTACAAT
CACCACCGTATAGAATGACTGATCCTTTTCACTGTCAAAGGTTATGACGG
GCGTGGTATCAGCTACAGCGGAAGGCACTTCATCCCCTGCACACACAGTC
TCTCCATTGAATCTCAGTAAGAGG back to topCoding sequence (CDS) from alignment at chr21:767421..771194+ >NO21G02520.4 ID=NO21G02520.4|Name=NO21G02520.4|organism=Nannochloropsis oceanica|type=CDS|length=1491bp|location=Sequence derived from alignment at chr21:767421..771194+ (Nannochloropsis oceanica) ATGGTCTTTACGGCTGATCAATCACCATCTCCTTTCCTCCCTCCCTCCCC TCTCTCCAGCCTTGCCTTCCCGAGCCTCTCAACGAACCAGCGACAGGAAT ACATAGACCGATTGGAACGTATTCTCTACACTAATATTCGTCCGTGGTGG CTTGGCAACAGCGTGGTGGACTTGGAGAATGGAGGTTTCAACCTCAACCA TGACATCAATGGGAACTACCTTGGCCCTGCTCCCAAAATGATCGTTACCC AGGCACGCATCACCTGGTTTTTTTCCCGCCTTCTCCTCTTCGAAGCCGAC GAGAAGGAGGGAGGAAAGGAGAGCGGGAAGGACGGCGGACAAAACCGTGA GGGCATGACTGAGGGAGAGAATAAGGGAAAGAGGGAGGGAGGGCTGAAGA GTAACAGGAGCGAAAACCTGGCAATGGCCATGCATGGCTTTACATTCTTG AAGGACAGGATGTGGGACCGTGCGAACGGGGGCTTCGTCTGGCGGGTGGC GGCGGACGGGAAGACGGTGGTGGAGGGTACCTTCAAGGATCTGTACGGGC AAGCGTTTGGTTTGTACGCTCTTTCGTACTATTATATGGCCACGGGGGAT AGGGAGGCCTTGGCAATGGCCTCCCAGCTGTTTGACCTGCTGTATACGAG GTCTCTCGATCCTGCCCATTTCCAAGGCGCCATCCAGAGACGCTCTCCCA AGACCATTAACACCCACCTCCACCTCCTGGAGTCGTTGGTGGCTTTCCAC AGGGCGCTAAAAGAGGGAGGGAGGGAGGAAGGGATGAAAGGCGGATCATT CGAGGAGGAAGAGAAGGAAGGGAGGGGTGAAGATGGGAGGGAGGGGAGGG TAGAGACGGTCATCCGTGAGCTGATCGCCTTGGTGACGGGGAAAATGCTG ATAGATCCTCCAGGCACTGTTGTCGAGTTTTATGCCAGCGACTGGACTCC GGACGACACTCCCAACCTCCTCCTCTTTGGCCACGTGAACGAGCTGCTCT GGTTGGTGGTGGATGCCTGCGAGTCTTTGGACATCCGCCTATCCTCCCTC CCTCCCTCTTTCCTCTCCTCCCTTTGGATTTATTCCACCACTTATGGCTT CGATCAGACTCAGGGCGCCTTTCAAAATCAACGAGTGCTAGAAACCGAAA AGCCCCTCCTCCAGCCCCTCCTCCAGCCCTCCCTCCCTTTCGCACAAGAC GATGACAAGGTGTGGTGGGTCCAGGCCGAAAGTCTCATCGCCGCCGCCAA GTACAGCAGAATCGACAGAGGGGAGGGAGGGGGAGAGGGCGGGATCGAGG CAGGGGAGGCGTTTGGGGCCCTGCTGAAGTACTTGAACGGGACGATGATT GATTGGGAGAGGGGAGAGTGGTTCGCGGAGGTGAAGGAGGGAAGAAAGGA GGGGGGGAAGGCGAACGAGTGGAAGGGTCCATATCACAACGGGCGTGCGA TGATTCTGTGTCTAGAGGAATTGCGAGGGAGGAAAACTTAG back to top
|