Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:767421..771194 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G02520.3 vs.
Match: KPL23390.1 (hypothetical protein AMJ75_06185 [Phycisphaerae bacterium SM1_79])
HSP 1 Score: 240.4 bits (612), Expect = 1.300e-59
Identity = 165/484 (34.09%), Postives = 226/484 (46.69%), Query Frame = 0
Query: 34 YIDRLERILYTNIRPWWLGNSVVDLENGGFNLNHDINGNYLGPAPKMIVTQARITWFFSRLLLFEADEKEGGKESGKDGGQNREGMTEGENKGKREGGLKSNRSENLAMAMHGFTFLKDRMWDRANGGFVWRVAADGKTVVEGTFKDLYGQAFGLYALSYYYMATGDREALAMASQLFDLLYTRCHDTTHGGFFEAPFNDWSLDPAHFQGAIQRRSP-KTINTHLHLLESLVAFHRALKEGGREEGMKGGSFEEEEKEGRGEDGREGRVETVIRELIALVTGKMLIDPPGTVVEFYASDWTP--DDTPNLLLFGHVNELLWLVVDACESLDIRLSSLP-PSFLSSLWIYSTTYGFDQTQGAFQNQRVLETEKPLLQPLLQPSLPFAQDDD---KVWWVQAESLIAAAKYSRIDRGEGGGEGGIEAGEAFGALLKYLNGTMIDWERGEWFAEV-KEGRKEGGKANEWKGPYHNGRAMILCLEELR 510
+I RLE++L NI +W S+ DLENGG+ + NG KMIVTQ+RI W +SRL +DG +R E+L A G+ FLK++MWD NGGF W V G ++ K LYGQAF LYA+S YYMA R+ A Q F+LL +CHD +GG+ E+ DW+ P + + S K +NTHLHLLE+L AF+R K E + ELI + + ++ G + Y DWTP D + +GH E +WL++DAC + S+ P +L+ YS YG+DQ G F + S PF + D KVWWVQAE+L++ + + + F ++ M+DW+ GEW A + EG K+G KAN WK YHNGRAMI CL L+
Sbjct: 12 HIPRLEKVLKENIISFWDARSL-DLENGGYIIGFGPNGERKEQITKMIVTQSRIVWLYSRL--------------ARDG---------------------YSRKEHLKAADLGYRFLKEKMWDSKNGGFYWEVDVSGSKKLKPR-KHLYGQAFALYAISEYYMACKRRDVSDFAIQFFNLLEEKCHDGKYGGYIESFDEDWTPLPDNELSYMGVESGLKLMNTHLHLLEALTAFYRTSKLPLARER--------------------------LLELIRIQSNAVVRKDLGVCTDKYERDWTPRLDGDYARVSYGHDLENIWLLIDACNVAGV--SNYPLLDLYKALFDYSLKYGYDQVNGGFYD-----------------SGPFNKTADRRAKVWWVQAEALVSPLYMYELTQ-------DTKYLSVFEKTYDFIEKNMVDWQNGEWHANITPEGHKQGDKANVWKAGYHNGRAMIECLTMLK 406
The following BLAST results are available for this feature:
BLAST of NO21G02520.3 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 Expect = 1.30e-59 / Id = 34.09 Sequence KPL23390.1
Match Name E-value Identity Description
KPL23390.1 1.300e-59 34.09 hypothetical protein AMJ75_06185 [Phycisphaerae ba... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G02520.3 ID=NO21G02520.3|Name=NO21G02520.3|organism=Nannochloropsis oceanica|type=mRNA|length=2673bp back to top protein sequence of NO21G02520.3
>NO21G02520.3-protein ID=NO21G02520.3-protein|Name=NO21G02520.3|organism=Nannochloropsis oceanica|type=polypeptide|length=514bp back to top mRNA from alignment at chr21:767421..771194+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02520.3 ID=NO21G02520.3|Name=NO21G02520.3|organism=Nannochloropsis oceanica|type=mRNA|length=3774bp|location=Sequence derived from alignment at chr21:767421..771194+ (Nannochloropsis oceanica)ATGG
TCTTTACGGCTGATCAATCACCATCTCCTTTCCTCCCTCCCTCCCCTCTC
TCCAGCCTTGCCTTCCCGAGCCTCTCAACGAACCAGCGACAGGAATACAT
AGACCGATTGGAACGTATTCTCTACACTAATATTCGTCCGTGGTGGCTTG
GCAACAGCGTGGTGGACTTGGAGAATG GTATGCGGGAAAAGGGAGGGAGG
GAGGGAGGGCGGGCGGAGGGAAGGAGGGAGGGAGCAACTCAACACCATCC
GAACACGAAAGCGGAGGAATGGCGGGGCATCCCAGCACTCTATCTCATAT
GGACACATGTACACACATACATATATGACCAGGAGGTTTCAACCTCAACC
ATGACATCAATGGGAACTACCTTGGCCCTGCTCCCAAAATGATCGTTACC
CAG GTGCGTTCCTCTTCTCCCTCCTTCCCTTCCTCCCTCCCTCCTTACCC
CCTCCCTCCCTCCCACCTTCCATTTTGCCCTTCTCCATATCCTTTCCATT
TCCATTCTTTTTCCCGCAGGCACGCATCACCTGGTTTTTTTCCCGCCTTC
TCCTCTTCGAAGCCGACGAGAAGGAGGGAGGAAAGGAGAGCGGGAAGGAC
GGCGGACAAAACCGTGAGGGCATGACTGAGGGAGAGAATAAGGGAAAGAG
GGAGGGAGGGCTGAAGAGTAACAGGAGCGAAAACCTGGCAATGGCCATGC
ATGGCTTTACATTCTTGAAGGACAGGATGTGGGACCGTGCGAACGGGGGC
TTCGTCTGGCGGGTGGCGGCGGACGGGAAGACGGTGGTGGAG GTAGGTAG
GTAGGGAGGGAGGGAGGGAGGGGGGGAGGAGGGGCATAATTTGCCCAGCG
TGTCTGACTATTCGTTCTTCCTTCTTATGTAGGGTACCTTCAAGGATCTG
TACGGGCAAGCGTTTGGTTTGTACGCTCTTTCGTACTATTATATGGCCAC
GGGGGATAGGGAGGCCTTGGCAATGGCCTCCCAGCTGTTTGACCTGCTGT
ATACGAG GTGAGGGAGGGATGGAGGAAGGTAGAGAGGGGAAGAAGGAAGA
AGAGATTAGTTGGCTTATGAGAGGGAAAGAAGGGAGGGGGGGAGGGAGGG
AGGGAGGGAGGGAGGATTATGTCTGACGCAATGCCATGACACCCTCCATC
CCAAAGGTGCCACGACACCACGCATGGAGGTTTCTTTGAAGCACCCTTCA
ATGACTG GTACGCGGCGGACATACACTTGTCGCCTCCCTTCCTTCCTCTC
TCCCTCCCTCCCTCCCTCCCTCCCTCCGTCCCTCCCTTCCCAACCCCAGG
TTCTCCCTTCCTCCCTCCCTCCCTCGCATGCCTTCCCTCCCTTCTCAGGT
CTCTCGATCCTGCCCATTTCCAAGGCGCCATCCAGAGACGCTCTCCCAAG
ACCATTAACACCCACCTCCACCTCCTGGAGTCGTTGGTGGCTTTCCACAG
GGCGCTAAAAGAGGGAGGGAGGGAGGAAGGGATGAAAGGCGGATCATTCG
AGGAGGAAGAGAAGGAAGGGAGGGGTGAAGATGGGAGGGAGGGGAGGGTA
GAGACGGTCATCCGTGAGCTGATCGCCTTGGTGACGGGGAAAATGCTGAT
AGATCCTCCAG GTAGGAAGGGAGGGAGGGAGGGAGGGAAAGAGGGCGGAC
AGAGGAGCCAGACCAAGGGGTAAGTAATAATCTCCACCCTGCTTATGCAT
GCCTCCTTCCCTTTCCCCCTCTTCCCTTCTTCAATCCCTCCTTCCTTCAG
GCACTGTTGTCGAGTTTTATGCCAGCGACTGGACTCCGGACGACACTCCC
AACCTCCTCCTCTTTGGCCACGTGAACGAGCTGCTCTGGTTGGTGGTGGA
TGCCTGCGAG GTATGTCACTCCTTCTAACGTTCACCCTCTCCCTGGCTCC
CTCCCTCCCTCGGCTTTTATGGCTTACGCACCACCGTTGAACCTCTTCCT
CCCTCCCTCTCTTTTTCCTTCTTCCATCTTTCCCTCCCTCAGTCTTTGGA
CATCCGCCTATCCTCCCTCCCTCCCTCTTTCCTCTCCTCCCTTTGGATTT
ATTCCACCACTTATGGCTTCGATCAGACTCAGGGCGCCTTTCAAAATCAA
CGAGTGCTAGAAACCGAAAAG GTGAGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGCGAGGGAGGGAGGGAGCGAGGGAGGGAGGGAGGGAGAATGGGC
TGACAGGAAGTGAACGATTCCATCAATCTCCAAGTTTTATTGACATCTTA
TTTAATGCGCCTCCATCACACCCTGGCTCTCTTTTCTTCCATCCCTCCAG
CCCCTCCTCCAGCCCCTCCTCCAGCCCTCCCTCCCTTTCGCACAAGACGA
TGACAAGGTGTGGTGGGTCCAGGCCGAAAGTCTCATCGCCGCCGCCAAGT
ACAGCAGAATCGACAGAGGGGAGGGAGGGGGAGAGGGCGGGATCGAGGCA
GGGGAGGCGTTTGGGGCCCTGCTGAAGTACTTGAACGGGACGATGATTGA
TTGGGAGAGGGGAGAGTGGTTCGCGGAGGTGAAGGAGGGAAGAAAGGAGG
GGGGGAAGGCGAACGAGTGGAAGGGTCCATATCACAACGGGCGTGCGATG
ATTCTGTGTCTAGAGGAATTGCGAGGGAGGAAAACTTAG back to top Coding sequence (CDS) from alignment at chr21:767421..771194+
>NO21G02520.3 ID=NO21G02520.3|Name=NO21G02520.3|organism=Nannochloropsis oceanica|type=CDS|length=1542bp|location=Sequence derived from alignment at chr21:767421..771194+ (Nannochloropsis oceanica) back to top