Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:717732..723218 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G02390.1 vs.
Match: EWM29480.1 (myb-related protein a [Nannochloropsis gaditana])
HSP 1 Score: 316.6 bits (810), Expect = 2.500e-82
Identity = 312/754 (41.38%), Postives = 396/754 (52.52%), Query Frame = 0
Query: 30 SSSSSSSSSLSASTSSTSSLTTTPSLPFTVLASSPSAATTIDAIPPPSSSSSSSSSSSSASLAAAASTTFLSSSMHSLSGGLSLPSTTTAGTGSSSHSVASLPSGTRSQ--DSVLSSSNNSSSSKAKKKEGKKEGGGGPQGNCRKPANAPVTVAMSSSGKLWTSEQDELLREGVLRLGTLNWVLVLQHLLPHPFTQEECTIRWEETKDIPIKGPWSPEEDALLQDLVEKYGPRPKKWSLLAQHIPGRAGKQCRERWLNHLDQSVKKGEWEEEEDVVLCQAQRRLGNKWSEIAKLLPGRAENSVKNRFNSLITRRVSVRHGPGPLGAFEELFATPPSLPLSSSSSIPSSSSA---PVVPRQEQQQPQEALAPSSLPSSTSSSSVKTTTTTGGSKKRGTRTAKKGSATAASAGAGAGAKAVAATAATAVRQTPLAAATAATAAGAMPKRAATAST---QFFSASSSSSLPSSLPSSLPSSSLDSSYLSFYNQQQQQQ--QLQQQQQQLPQQQQPQQPQQPQQQQQNHQQQQQQCSAVLNSSSPPTGAGTVTDDDNTLPPSFPLPPPPPPPPSQSHKSKHNSQQQQQQQQQQQQYDKHLSHHHQQQQQVAQDMKSLLASSQSITTTTTHPPSLPPSLTMNDADMHA----------YLAHLGLFNPPKTSPSSLPSSS--SSLWKPTRGGSEAEGREGGREGGREGGYVFGKDASIGEGLPMMEGRLDQQHLPH----------IDDDVLFGQAEGQ 752
S+SS+ SS + SS+S+ TT PSLP A PS ATT+ PS SSSS+ FLSSS HSLSGGLSLPSTT + + SL S T S DS SSS+ ++S KAK GKK+ GG QGN RKPANAPVT+A S +G WTSEQD+LLRE +LR GT W + +H+LP F+ +EC +RW+E KD+P+KGPWS EEDALLQ LV +YGPRPKKWS+LAQHIPGRAGKQCRERWLNHLD+SVKKGEWEE ED +LC AQRRLGNKWSEIAKLLPGRAENSVKNRFNSLITRR S R+GPGPLG E P S S+ PS ++A P +P +A S P +S + +TG KR T AK G G A+ ++T L+ + A G + AA + Q S + P + S + +Y +F N+ QQ QL QQQQQL QP A L PTGAGT+ PP+F P P PP+ ++K+K +++ ++Q+ Q H Q Q++A +++ L + S + PP PP+ + + A A +L + P+ PSSS PT + + R G REG ++ KD IG G + +D PH DD+ F Q E Q
Sbjct: 15 STSSTLPSSSDLTLSSSSAFTTPPSLPMCT-AVHPSIATTLS----PSLSSSSA---------------FLSSSTHSLSGGLSLPSTT------ADQLLPSLQSSTESLGGDSTTSSSSKTTSGKAKGAGGKKKEGGS-QGNGRKPANAPVTIAHSRTGHTWTSEQDDLLREAILRNGTDKWAAITEHMLPFSFSSDECAVRWDEIKDVPVKGPWSVEEDALLQLLVGRYGPRPKKWSMLAQHIPGRAGKQCRERWLNHLDRSVKKGEWEEGEDAILCDAQRRLGNKWSEIAKLLPGRAENSVKNRFNSLITRRNSHRYGPGPLGVGELSTILPSSSAPPSAPCTPSKTTATPTPTIPAPGAMPRPQAPPIVSFPFPSSPARPAMGPSTGAGSKRKTEGAK---------GEGGEAR----------KKTCLSKSAAQEGQGGKKEGAAASKKQGGQGVSGKEGADAPIPSGPTFYSPTSMEAYFAFLNKFDPQQFLQLTQQQQQLLFSAQP--------------SSGLSFGAGLPFLPQPTGAGTL-----HAPPAF--LPTAPLPPATTNKTKGQTKKGTKEQEDTQ-------HEQQDGQELASELQLFLGAPLSTDASHAPPPCFPPASSSSSAPSAAGSILPVTEADTQDYLSQLGLLQPKPAVSPSSSFLPPSSTPTLAVPDEKSRREAAAGAREGAHLRAKDVGIGSGSSL---SIDMPGEPHGLASEAGQGPQVDDLFFAQGEAQ 691
The following BLAST results are available for this feature:
BLAST of NO21G02390.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 4500 Expect = 2.50e-82 / Id = 41.38 Sequence EWM29480.1
Match Name E-value Identity Description
EWM29480.1 2.500e-82 41.38 myb-related protein a [Nannochloropsis gaditana] [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G02390.1 ID=NO21G02390.1|Name=NO21G02390.1|organism=Nannochloropsis oceanica|type=mRNA|length=4568bp back to top protein sequence of NO21G02390.1
>NO21G02390.1-protein ID=NO21G02390.1-protein|Name=NO21G02390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=925bp back to top mRNA from alignment at chr21:717732..723218-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02390.1 ID=NO21G02390.1|Name=NO21G02390.1|organism=Nannochloropsis oceanica|type=mRNA|length=5487bp|location=Sequence derived from alignment at chr21:717732..723218- (Nannochloropsis oceanica)AT
GGAGAATGGGAGACAAGATTCCTTTGCTGCGGTGGCTGCTTCCGCCGCCG
CAGTCAGGGGGTTACCTTCTCCGTCGTTTGGCAAATCTTCGTCCTCCTCT
TCGTCCTCCTCCTTGTCCGCCTCCACCTCCTCCACCTCCTCCCTGACCAC
GACCCCTTCCCTCCCTTTCACCGTGCTCGCGTCGTCTCCTTCCGCTGCCA
CCACCATCGATGCCATCCCTCCTCCCTCCTCCTCCTCCTCCTCATCGTCA
TCTTCCTCCTCCGCCTCTTTAGCTGCTGCAGCTTCGACTACCTTTCTCTC
CTCTTCCATGCACTCTCTGAGTGGTGGGTTGAGCTTACCAAGCACCACGA
CTGCAGGAACAGGGTCGTCTTCTCACTCAGTCGCTTCCCTCCCGAGCGGA
ACTCGTAGCCAGGACAGCGTCCTCAGCAGCAGCAATAACAGTAGCAGCAG
CAAAGCCAAGAAGAAAGAAGGAAAGAAGGAGGGAGGAGGAGGCCCGCAAG
GGAACTGCCGGAAGCCGGCTAACGCTCCTGTAACCGTTGCGATGTCGAGC
TCGGGGAAATTGTGGACTTCCGAACAAGACGAGTTATTGAG GTAAGGAGG
GAGGGAAAGAGAGAGGAAACGAAGGAAAGAGGGAGAGAGGGGATAGTCAG
AGCAAAAGCTTGGAAGAATCATGGGCAGGACAAGCAAGAACGAGGGTGCA
CCATACTCACCCTTCCTTCCCTCCCTCCCTCTCTCCCTTTTTCCTCCGAC
CCCTTCCCTCAGGGAGGGCGTCCTCCGGCTCGGCACATTGAACTGGGTCC
TTGTCCTGCAGCACTTGCTCCCTCATCCTTTCACCCAGGAGGAGTGCACC
ATTCGCTGGGAGGAGACTAAGGACATTCCCATCAAGGGGCCTTGGTCCCC
CGAAGAG GTAGGGAGGGAGGTAGGGAGGGAGGGAGGGAGGGAGAGAGGGA
GAACAGTGGAGTTGGACAAAGAGAAATGGAGAGGAGGGGACGTGGGAAAG
GAAGAGAATGTCATTGCTCTTCCTTCTCCCCTTTGCCCCCTCTCCTCCCT
TCCCACGCCACCTTGTCAAAGCCGAGTCCATCCCCAAGAGCGCCAAATAC
TCCCCCTCCCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTC
CCTCCCTCCAGGACGCCCTCCTCCAGGACCTCGTCGAGAAATACGGTCCT
CGTCCTAAGAAATGGAGCCTACTGGCGCAGCACATCCCGGGGAGGGCTGG
CAAGCAGTGCCGGGAGCGGTGGCTGAATCACCTGGATCAGAGCGTGAAGA
AGGGCGAGTGGGAGGAGGAGGAGGACGTGGTCTTGTGCCAAGCCCAGCGA
CGGTTGGGGAATAAGTGGAGTGAGATTGCTAAGCTTTTGCCCGGGCGGGC
GGAGAACAGTGTGAAGAACCGCTTCAA GTACGTGGGAGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAATTCTACACATGGA
TCCTTGGGGAGTTACTCCTCATCACACGACTCATTCTCACCCCTCCCTCC
CTCCCTCCCTCCCTCCCGCCCTCCCTCCCCTCCTAGCTCCCTCATCACAC
GGCGGGTCTCGGTTCGTCATGGGCCAGGACCTCTGGGAGCCTTTGAAGAA
CTCTTCGCCACCCCTCCCTCCCTCCCTCTCTCTTCCTCCTCCTCGATTCC
CTCCTCCTCCTCAGCACCAGTTGTGCCCAGGCAGGAGCAACAACAACCGC
AGGAGGCTCTTGCCCCCTCTTCCCTCCCTTCCTCCACCTCTTCCTCCTCT
GTGAAAACGACTACAACCACGGGCGGCTCCAAGAAGAGAGGGACAAGGAC
TGCGAAAAAAGGCAGCGCCACCGCGGCATCAGCAGGAGCCGGAGCCGGAG
CAAAGGCAGTCGCAGCAACAGCCGCAACAGCAGTACGACAAACACCTCTA
GCAGCAGCAACAGCAGCAACAGCAGCAGGAGCAATGCCCAAGAGGGCAGC
CACCGCGAGCACCCAATTCTTCAGCGCCTCCTCCTCTTCCTCCCTCCCTT
CCTCCCTCCCTTCCTCCCTCCCTTCCTCCTCCTTGGACTCCTCTTACCTC
TCGTTTTACAACCAGCAACAACAACAACAACAACTACAACAACAACAACA
ACAACTACCACAACAACAACAACCACAACAACCACAACAACCACAACAAC
AACAACAAAATCATCAACAACAACAGCAGCAGTGCAGCGCGGTGCTTAAC
TCTTCTTCTCCTCCCACTGGGGCTGGAACTGTCACAGACGACGACAACAC
CCTCCCTCCCTCCTTTCCTCTCCCTCCTCCTCCTCCTCCTCCTCCTTCCC
AAAGCCACAAGTCTAAACATAACTCGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGTACGACAAACATCTCTCTCATCATCATCAGCAGCAGCA
GCAGGTTGCTCAAGACATGAAGAGTCTCCTTGCCTCGTCCCAATCCATCA
CCACCACCACCACCCACCCTCCCTCCCTCCCTCCCTCCCTGACCATGAAC
GACGCCGACATGCACGCGTACCTCGCCCATCTCGGGCTCTTCAACCCCCC
CAAAACTTCCCCTTCCTCCCTCCCGTCTTCGTCCTCGTCCCTCTGGAAAC
CCACGCGAGGAGGAAGCGAGGCAGAAGGGAGGGAGGGAGGGAGGGAGGGA
GGAAGGGAGGGGGGCTACGTGTTTGGGAAGGACGCAAGCATTGGTGAGGG
CCTGCCGATGATGGAAGGACG GTATGTTGGCAAGAGAGGAAGGGATGGAG
AGATGGAGGGAGGGAGGGATGGAGGGAGGGAGGAAGCTTTGGCTTTCGGC
TGAAGATTCGTTGATTCGTTTACTCTCCTCACAAAATCACCCCGTCCCTC
CATCCCTCCCTCCCTCCCTCCCTCCTGCAGACTTGACCAGCAACATCTGC
CGCATATCGATGACGACGTGCTCTTTGGCCAGGCGGAGGGACAG GTAGGG
GGAGAGGGAGGGAGAGAGGGAGGGAGGGAGGGCGGGCAGAACACTTTACA
CACGATGTATGCTCGAGACGTGAATTAACTCACCACTCCCCTCTCCTTTT
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGTTTCTTTCTTCTCCTCCTC
TTCCCCTTCTTCCTCTCCAGGATCTGTTCCACGTGTCGCTCAACAGCCAA
GGGTGGGAGGCAGCGAGGGAGGGAGGGGAGCACGGCACACTTACACTTGG
CCCTACTTTTCCTCCTCTCGTCTACAGTGCGGGGCTGAAGATAGATGGAG
GGAAGGAGGGAGGGATGGAGGGAGGAATGGAGGGAGGGCGTTCGAATTTG
TCACAATTTTTGACGGCGTTGGGAGGGGAGCCGCAGCAGCAGCAGCAGCA
GCAGTACGACAAACACCTTTATCAGCAGCAGCTGCCCACGGGCACAGAGA
CAGGGCAGGAGAGAGGGAAGAAGCGAGGGAGGGAGGGAGGGGTGGAAGAA
GGGAGGGAGGGAGGGACAATGCAGCTGTTAATGTCCAGCGCGTCGTCGGT
GGGGATGGACGAGATGTTTGTACATATCGAGGAGAAGGAGAAGGAGGGGG
AGGGGGAGGAGGAGGGAGGGGGGGAGGAAGGGCAGGTGCTTTGGGGGATA
GGCGGGATAGAGAAGAAGCAGAGGATGATGGAAATGACCTGA back to top Coding sequence (CDS) from alignment at chr21:717732..723218-
>NO21G02390.1 ID=NO21G02390.1|Name=NO21G02390.1|organism=Nannochloropsis oceanica|type=CDS|length=2775bp|location=Sequence derived from alignment at chr21:717732..723218- (Nannochloropsis oceanica) back to top