NO21G02330.1, NO21G02330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G02330.1
Unique NameNO21G02330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1868
Alignment locationchr21:699682..702394 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:699682..702394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G02330.1 vs.
Match: OSX71219.1 (hypothetical protein BU14_0575s0006 [Porphyra umbilicalis])

HSP 1 Score: 173.3 bits (438), Expect = 1.200e-39
Identity = 100/263 (38.02%), Postives = 147/263 (55.89%), Query Frame = 0 
Query:   75 EQKEEPAWVRVSVLESRPVAEGLIHVAI------DGGDLMASYSVPGQYVQLKPHAPGAKPGFFAVASPPSVKSGSSRAEFLIKKTENTAWLCEAQAGEVIDMTPAMGKGYKIQSL---------DEEGINFVLLLAAGSGIAPIRAAIESEMLGLKKMSRYS-RLYLGVRSPAHLPYTEKFDAWREKGLEIIPCFSRAPVPMNSSGYW----GYVQQGLAGDDIRRPDKTAALVCGMKDMANLSTHILKQKGVAPERILFNF 318
            +++++  W  V V+E+    E   ++ I      + G L+ SY VPGQYVQ+K  A  AKPGFFA++  P+++      EFLIK+T+ +AW      G+ + M+P  GKG+ +  L         +EE +  +LL A GSGIAPIRAAIES++ GL+  +R S +LY G R P  + Y ++F  W    +E+IP  SR   P  ++  W    GYVQQ L  D +  P +T  L+CG+  M       L ++GV  +RIL NF
Sbjct:    2 QKQQDTEWNPVEVVENSAACEEHRYIVINVGTTAEKGSLVDSYRVPGQYVQIKADAADAKPGFFAISCAPNIQ---GYFEFLIKETDGSAWFTGTAPGDKVLMSPVGGKGFPMSRLEPIQFPAVPEEEAVKDLLLFATGSGIAPIRAAIESQLNGLRAPTRRSIKLYYGARYPRRMAYMDRFRLWASDKIEVIPVMSR---PTEAADEWDGRTGYVQQALMQDGVAAPKQTGVLMCGVGGMTKDVKAYLMEQGVPEDRILTNF 258
The following BLAST results are available for this feature:
BLAST of NO21G02330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OSX71219.11.200e-3938.02hypothetical protein BU14_0575s0006 [Porphyra umbi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G02330NO21G02330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G02330.1NO21G02330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G02330.1.cds1NO21G02330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02330.1.cds2NO21G02330.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02330.1.cds3NO21G02330.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02330.1.cds4NO21G02330.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02330.1.cds5NO21G02330.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02330.1.cds6NO21G02330.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G02330.1 ID=NO21G02330.1|Name=NO21G02330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1868bp
GAAAAGGAAAGCGAAAGAGTTGCTTAGACGGGACGATGAAAAGGCATTTA
TGCTAAAGATATGGCCAAAAACCGTGGCTAGCTGAATAAATATACGCAGC
AAGCAAAGCTTGACGCATGGACAAAGACAGGCAGCTTTTGAGAAGGGAGT
TTATTGCTTCAGGTGTGAGCAAGGTGATGGGAAAGAGGCTGCTCTTTCGT
GGCCTCCTGGCACTCTCCTGATCAGGATGTCCCTCTTTCATGTGCTCAAC
ACACACCAAATGAACCAACACACGCTTAACACTCCCTTCGTCTCCTTCCT
CTGTTTGTCCTCAGGCCCCTTGCTTCATTTACTCGCCTGTCTCTCCAGCA
GAAGCAGCCGCAGCCGCGCCAGTATCCCCATCCAGTCCGCTACTCTCTCC
TCCCATCCAACATGGTCCGACCGTCCTCCTCGCCCTTCCTGCTCCTCCTT
TTCCTCCTCTTGTCTGCCCTAATAGCCCTTGCAACCGCTGCCAGTGCTTT
CGTCCTTGCCCCGTCCCCCTGTTGCCGAAGTGTGAGCCACAGCGGTAAGA
GCATTAGAAGACACCTAGCGGCCAGCAGCAGCGGTGGGGAAAAGAAGGTC
AAAGCTGCCACAGCAGCCGCATCGAAGAAAGAGGAGCAGAAGGAGGAGCC
GGCATGGGTGCGTGTGTCCGTGTTAGAATCACGACCGGTGGCGGAGGGAT
TAATTCATGTCGCGATCGACGGAGGGGACTTGATGGCATCCTATTCGGTG
CCAGGGCAGTACGTCCAGCTGAAACCCCATGCCCCTGGTGCCAAGCCCGG
CTTCTTCGCCGTGGCGTCACCCCCGTCCGTTAAGAGCGGGAGCAGCCGGG
CAGAATTTCTGATCAAGAAGACGGAGAACACGGCGTGGTTGTGTGAGGCG
CAAGCGGGGGAGGTCATCGACATGACTCCCGCCATGGGAAAGGGATATAA
AATCCAGTCCCTGGACGAGGAGGGGATTAACTTTGTCCTCCTCCTGGCGG
CTGGGAGTGGGATAGCCCCCATCCGCGCTGCGATTGAGAGTGAGATGCTG
GGTTTGAAGAAGATGTCGCGCTACTCCCGCCTCTATCTGGGAGTCCGCTC
GCCCGCCCACCTTCCTTACACGGAGAAATTCGACGCGTGGCGCGAAAAGG
GTCTGGAAATAATCCCATGCTTCTCCCGCGCGCCCGTGCCCATGAATTCA
TCCGGGTATTGGGGCTACGTACAGCAAGGCCTTGCCGGCGATGATATTCG
AAGGCCGGACAAAACCGCGGCGCTGGTGTGCGGGATGAAGGACATGGCCA
ACCTCTCGACTCATATCTTGAAGCAGAAGGGCGTCGCGCCTGAGAGAATT
TTGTTCAACTTCTAGAAGAAAGGAAAGTAGGGAGTGGGAAAGAGGGGGGG
AAGGAAGGAAGGAGGAAGGAGAGGGGGAAGTAGGCATGGAAACAAGGAAA
AATATAATTTTTAAAAAACGCTGCCTCCTGCAGTCCCACGCATCATCTCT
CAATAACGTATACCTGTAGATATACTCATATACACTCTTATAAATGTATA
TAAACTTCCAGATGTATGCATATTGATGTTAAAGCCAGTGTGTTCTGGCA
AGAAATGTCTTCAGCGGATCGCTCTCGGAGGAGTTCTATACATTGTCTGT
TTAATTTTAATTTTAATTTCAAATCCCCGTTTGTGGACAGTTAAAGACTT
CCTCATGGCCAGACGTACTCCAAGAGCCTGCCTTTGTCTTGGCCTGACGC
GTATCACACTGCTCATGGTATCGTAGGGAGGGTCTTTACTCTATAGGCTG
GCTCGGCTTCGACCGTTAGATGACCGTGGAAGGCAACCCAAGCTTCCTCA
TGGCCTGACCACAACCTA
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protein sequence of NO21G02330.1

>NO21G02330.1-protein ID=NO21G02330.1-protein|Name=NO21G02330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MVRPSSSPFLLLLFLLLSALIALATAASAFVLAPSPCCRSVSHSGKSIRR
HLAASSSGGEKKVKAATAAASKKEEQKEEPAWVRVSVLESRPVAEGLIHV
AIDGGDLMASYSVPGQYVQLKPHAPGAKPGFFAVASPPSVKSGSSRAEFL
IKKTENTAWLCEAQAGEVIDMTPAMGKGYKIQSLDEEGINFVLLLAAGSG
IAPIRAAIESEMLGLKKMSRYSRLYLGVRSPAHLPYTEKFDAWREKGLEI
IPCFSRAPVPMNSSGYWGYVQQGLAGDDIRRPDKTAALVCGMKDMANLST
HILKQKGVAPERILFNF*
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mRNA from alignment at chr21:699682..702394+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02330.1 ID=NO21G02330.1|Name=NO21G02330.1|organism=Nannochloropsis oceanica|type=mRNA|length=2713bp|location=Sequence derived from alignment at chr21:699682..702394+ (Nannochloropsis oceanica)
GAAAAGGAAAGCGAAAGAGTTGCTTAGACGGGACGATGAAAAGGCATTTA
TGCTAAAGATATGGCCAAAAACCGTGGCTAGCTGAATAAATATACGCAGC
AAGCAAAGCTTGACGCATGGACAAAGACAGGCAGCTTTTGAGAAGGGAGT
TTATTGCTTCAGGTGTGAGCAAGGTGATGGGAAAGAGGCTGCTCTTTCGT
GGCCTCCTGGCACTCTCCTGATCAGGATGTCCCTCTTTCATGTGCTCAAC
ACACACCAAATGAACCAACACACGCTTAACACTCCCTTCGTCTCCTTCCT
CTGTTTGTCCTCAGGCCCCTTGCTTCATTTACTCGCCTGTCTCTCCAGCA
GAAGCAGCCGCAGCCGCGCCAGTATCCCCATCCAGTCCGCTACTCTCTCC
TCCCATCCAACATGGTCCGACCGTCCTCCTCGCCCTTCCTGCTCCTCCTT
TTCCTCCTCTTGTCTGCCCTAATAGCCCTTGCAACCGCTGCCAGTGCTTT
CGTCCTTGCCCCGTCCCCCTGTTGCCGAAGTGTGAGCCACAGGTACGTCA
ATTGGGTGAAGAAAATGGGAAGCGAGGCAGGGAGGGGAGGCTGGATCCCT
CCCATTACCATCATCGATAGATACCCCAATTCCTCCCTCCCGTCCTCCCT
TCCTTTCTTCCTTCGTCTTACACAGCGGTAAGAGCATTAGAAGACACCTA
GCGGCCAGCAGCAGCGGTGGGGAAAAGAAGGTCAAAGCTGCCACAGCAGC
CGCATCGAAGAAAGAGGAGCAGAAGGAGGAGCCGGCATGGGTGCGTGTGT
CCGTGTTAGAATCACGACCGGTGGCGGAGGGATTAATTCATGTCGCGATC
GACGGAGGGGACTTGATGGCATCCTATTCGGTGCCAGGGCAGGTAGGGAG
GGAGGGAGGGAGGGAGGAAGGGAGGGATCGAGAGAGGGAGGGGGGGTAGC
GAGGGTAGCGAGGGAGGGGGGGAAGGAGGGAGGGCGTGTGCAAGGCATAG
AGGGAGGTTGATTTTCAAAAAATAAATAAACTCAATCGAAATATTCCCCT
TCCTCGTCCTCCTTCCACCCTTTCCGAAGTACGTCCAGCTGAAACCCCAT
GCCCCTGGTGCCAAGCCCGGCTTCTTCGCCGTGGCGTCACCCCCGTCCGT
TAAGAGCGGGAGCAGCCGGGCAGAATTTCTGATCAAGAAGACGGAGAACA
CGGCGTGGTTGTGTGAGGCGCAAGCGGGGGAGGTGAGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGAGGGGAAGGAGGGAGGGAGGGAGGGAGAAATGTGA
TCTCCACACGTCGAGCACGTCGTACCTTCACGTATGTCTCTTCCCATCCC
TACCCATCAATCCACCCTCCTTATCTCCACACTCACTCCTCGTACAATGC
ATTTCGTAGGTCATCGACATGACTCCCGCCATGGGAAAGGGATATAAAAT
CCAGTCCCTGGACGAGGAGGGGATTAACTTTGTCCTCCTCCTGGCGGCTG
GGAGTGGGATAGCCCCCATCCGCGCTGCGATTGAGAGTGAGATGCTGGGT
TTGAAGAAGGTACGTGCCCTCCCTCCCTCCCTCCTTTCCTTCTTTCCCTT
CCTTCCTTCCTGCCTTCCTCTTTTATCCACTAGAGATGGCGCTACTTATT
CACGGACCTCCCTCCTTCCCTCCACCCGACGTACCGACCAACCTCCCTCC
CTCTCTGCCTGCCTCCCTTTCTCCCTCCCTCCCTTCCCCCTCCCTCCGTG
CAGATGTCGCGCTACTCCCGCCTCTATCTGGGAGTCCGCTCGCCCGCCCA
CCTTCCTTACACGGAGAAATTCGACGCGTGGCGCGAAAAGGGTCTGGAAA
TAATCCCATGCTTCTCCCGCGCGCCCGTGCCCATGAATTCATCCGGGTAT
TGGGGTACGTACTCACTCACTCACTTCCTCCCTCCCTCCCTTTCTATCAA
AGCCTGTGAGTCCATGCCAGAGATTACCTCCAAATCACCTTGGTGTTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCTCCCTCG
TTTCTCAGGCTACGTACAGCAAGGCCTTGCCGGCGATGATATTCGAAGGC
CGGACAAAACCGCGGCGCTGGTGTGCGGGATGAAGGACATGGCCAACCTC
TCGACTCATATCTTGAAGCAGAAGGGCGTCGCGCCTGAGAGAATTTTGTT
CAACTTCTAGAAGAAAGGAAAGTAGGGAGTGGGAAAGAGGGGGGGAAGGA
AGGAAGGAGGAAGGAGAGGGGGAAGTAGGCATGGAAACAAGGAAAAATAT
AATTTTTAAAAAACGCTGCCTCCTGCAGTCCCACGCATCATCTCTCAATA
ACGTATACCTGTAGATATACTCATATACACTCTTATAAATGTATATAAAC
TTCCAGATGTATGCATATTGATGTTAAAGCCAGTGTGTTCTGGCAAGAAA
TGTCTTCAGCGGATCGCTCTCGGAGGAGTTCTATACATTGTCTGTTTAAT
TTTAATTTTAATTTCAAATCCCCGTTTGTGGACAGTTAAAGACTTCCTCA
TGGCCAGACGTACTCCAAGAGCCTGCCTTTGTCTTGGCCTGACGCGTATC
ACACTGCTCATGGTATCGTAGGGAGGGTCTTTACTCTATAGGCTGGCTCG
GCTTCGACCGTTAGATGACCGTGGAAGGCAACCCAAGCTTCCTCATGGCC
TGACCACAACCTA
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Coding sequence (CDS) from alignment at chr21:699682..702394+

>NO21G02330.1 ID=NO21G02330.1|Name=NO21G02330.1|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at chr21:699682..702394+ (Nannochloropsis oceanica)
ATGGTCCGACCGTCCTCCTCGCCCTTCCTGCTCCTCCTTTTCCTCCTCTT
GTCTGCCCTAATAGCCCTTGCAACCGCTGCCAGTGCTTTCGTCCTTGCCC
CGTCCCCCTGTTGCCGAAGTGTGAGCCACAGCGGTAAGAGCATTAGAAGA
CACCTAGCGGCCAGCAGCAGCGGTGGGGAAAAGAAGGTCAAAGCTGCCAC
AGCAGCCGCATCGAAGAAAGAGGAGCAGAAGGAGGAGCCGGCATGGGTGC
GTGTGTCCGTGTTAGAATCACGACCGGTGGCGGAGGGATTAATTCATGTC
GCGATCGACGGAGGGGACTTGATGGCATCCTATTCGGTGCCAGGGCAGTA
CGTCCAGCTGAAACCCCATGCCCCTGGTGCCAAGCCCGGCTTCTTCGCCG
TGGCGTCACCCCCGTCCGTTAAGAGCGGGAGCAGCCGGGCAGAATTTCTG
ATCAAGAAGACGGAGAACACGGCGTGGTTGTGTGAGGCGCAAGCGGGGGA
GGTCATCGACATGACTCCCGCCATGGGAAAGGGATATAAAATCCAGTCCC
TGGACGAGGAGGGGATTAACTTTGTCCTCCTCCTGGCGGCTGGGAGTGGG
ATAGCCCCCATCCGCGCTGCGATTGAGAGTGAGATGCTGGGTTTGAAGAA
GATGTCGCGCTACTCCCGCCTCTATCTGGGAGTCCGCTCGCCCGCCCACC
TTCCTTACACGGAGAAATTCGACGCGTGGCGCGAAAAGGGTCTGGAAATA
ATCCCATGCTTCTCCCGCGCGCCCGTGCCCATGAATTCATCCGGGTATTG
GGGCTACGTACAGCAAGGCCTTGCCGGCGATGATATTCGAAGGCCGGACA
AAACCGCGGCGCTGGTGTGCGGGATGAAGGACATGGCCAACCTCTCGACT
CATATCTTGAAGCAGAAGGGCGTCGCGCCTGAGAGAATTTTGTTCAACTT
CTAG
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Synonyms
Publications