NO21G02260.1, NO21G02260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G02260.1
Unique NameNO21G02260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1011
Alignment locationchr21:682982..684374 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:682982..684374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G02260.1 vs.
Match: EWM22739.1 (hypothetical protein Naga_100209g9 [Nannochloropsis gaditana])

HSP 1 Score: 325.9 bits (834), Expect = 1.500e-85
Identity = 177/348 (50.86%), Postives = 238/348 (68.39%), Query Frame = 0 
Query:    1 MRLIASSRSLLLAAAAAALCLPSALAH--ITVEDNFLDEAAREDILAQLPGQT-RFKHTLDVPGQLYQRLMSIINPSNTDLSHTETSVPAKGEGRFVPAHKDVFEDNALADGQVGLVYLEGDGRMLFQHEVTGEETVVDVQPGRLMSWDNSVYTHTLIPGDLPRRILGPMAFRDGGMQSIGSEATRTVAQASTNSLTVRPGRIIKVNLKFIVLDENPI-RKRAVRKLENEDLVIGCGLMD-QNRRMLGGRNKTTNANDD-----ITFVNSKLKPNFYKPKLTFN--NTLDAVYWTLPSETTKILHPYKITWAFRVGKGVPSGTVVPIGVVIEDDNTPEFLVELRVLVK 337
            M L  SSR  LL+ A A LCL S+ +H  I VEDNF+DE  RE +LAQLP +  RFKHT+DVPG +Y+RL+S+++P N+++  ++ + PAKG+   V AHKD FED++LAD QVGLVYLEGDGRM  +++VTGEET++DV+PGR +SWDN  YTH L+ G +PRRILGPMAFRDGG QSIG +  R + QA  + L  R G+ ++V    +VLD+ PI RKRAVR LE +D+V  C L    N + L   NKT+    D     I+F  SK+ PN ++PK+T+   +  D + WTLPS+ T++L  YKIT   R+GK VPSGTV+P+ + +      E+  EL V+VK
Sbjct:    1 MPLFVSSR-YLLSIATAVLCLTSSFSHAKIVVEDNFIDETTREALLAQLPSEMHRFKHTVDVPGNVYKRLLSVLHPENSEVFPSQLTAPAKGQKGMVAAHKDTFEDSSLADRQVGLVYLEGDGRMQLKNDVTGEETIIDVKPGRFLSWDNRHYTHQLLAGSMPRRILGPMAFRDGGFQSIGDDPNRFIIQARAHHLFARAGKTVRVTADLVVLDDQPIGRKRAVRALETDDIVFACSLDPFFNFQSLTTGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTVIPLYLSVPF----EWEQELGVVVK 343
The following BLAST results are available for this feature:
BLAST of NO21G02260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22739.11.500e-8550.86hypothetical protein Naga_100209g9 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G02260NO21G02260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G02260.1NO21G02260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G02260.1.cds1NO21G02260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02260.1.cds2NO21G02260.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02260.1.cds3NO21G02260.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G02260.1 ID=NO21G02260.1|Name=NO21G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1011bp
ATGCGACTCATTGCCTCCTCCCGGTCCCTCCTGCTGGCCGCCGCTGCTGC
TGCGCTCTGCCTCCCGTCGGCGCTCGCCCACATCACGGTGGAGGATAACT
TTCTCGACGAGGCTGCGCGCGAGGATATTCTGGCCCAGCTGCCGGGACAA
ACCCGTTTCAAGCACACGCTGGACGTGCCGGGCCAGCTGTACCAACGCCT
CATGTCCATCATCAACCCAAGCAACACCGATCTCTCTCACACGGAGACCT
CGGTGCCGGCCAAGGGGGAAGGCCGATTTGTGCCCGCACACAAGGACGTA
TTCGAAGATAATGCGTTGGCGGACGGGCAAGTGGGGTTGGTGTACCTGGA
GGGGGATGGCCGCATGCTGTTCCAGCACGAGGTGACGGGCGAGGAGACGG
TGGTAGATGTGCAGCCTGGGCGATTGATGTCGTGGGACAACAGTGTGTAC
ACGCACACTCTCATTCCCGGGGATCTGCCTCGTCGTATTCTGGGGCCGAT
GGCGTTTCGTGATGGAGGGATGCAGTCGATTGGGTCTGAGGCAACTCGTA
CCGTTGCTCAAGCGAGTACCAACTCCTTGACTGTGCGTCCAGGAAGGATC
ATCAAGGTGAACCTTAAGTTTATTGTCCTCGATGAGAACCCCATCCGCAA
GCGCGCGGTGCGGAAGTTGGAGAACGAGGACCTGGTGATCGGGTGCGGAC
TGATGGATCAGAACAGGCGAATGCTCGGGGGGCGCAACAAGACAACGAAT
GCGAACGATGATATCACATTCGTAAACTCCAAGCTGAAGCCCAATTTCTA
CAAGCCGAAGTTGACCTTCAATAATACACTCGATGCTGTGTATTGGACCC
TCCCGAGCGAGACGACGAAAATCCTGCACCCGTACAAGATCACCTGGGCT
TTCCGTGTGGGGAAGGGCGTGCCGTCCGGTACGGTTGTCCCGATCGGTGT
CGTTATTGAGGATGATAACACCCCAGAGTTCCTGGTCGAGCTGCGGGTGC
TGGTGAAGTAA
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protein sequence of NO21G02260.1

>NO21G02260.1-protein ID=NO21G02260.1-protein|Name=NO21G02260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MRLIASSRSLLLAAAAAALCLPSALAHITVEDNFLDEAAREDILAQLPGQ
TRFKHTLDVPGQLYQRLMSIINPSNTDLSHTETSVPAKGEGRFVPAHKDV
FEDNALADGQVGLVYLEGDGRMLFQHEVTGEETVVDVQPGRLMSWDNSVY
THTLIPGDLPRRILGPMAFRDGGMQSIGSEATRTVAQASTNSLTVRPGRI
IKVNLKFIVLDENPIRKRAVRKLENEDLVIGCGLMDQNRRMLGGRNKTTN
ANDDITFVNSKLKPNFYKPKLTFNNTLDAVYWTLPSETTKILHPYKITWA
FRVGKGVPSGTVVPIGVVIEDDNTPEFLVELRVLVK*
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mRNA from alignment at chr21:682982..684374-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02260.1 ID=NO21G02260.1|Name=NO21G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1393bp|location=Sequence derived from alignment at chr21:682982..684374- (Nannochloropsis oceanica)
ATGCGACTCATTGCCTCCTCCCGGTCCCTCCTGCTGGCCGCCGCTGCTGC
TGCGCTCTGCCTCCCGTCGGCGCTCGCCCACATCACGGTGGAGGATAACT
TTCTCGACGAGGCTGCGCGCGAGGATATTCTGGCCCAGCTGCCGGGACAA
ACCCGTTTCAAGCACACGCTGGACGTGCCGGGCCAGCTGTACCAACGCCT
CATGTCCATCATCAACCCAAGCAACACCGATCTCTCTCACACGGAGACCT
CGGTGCCGGCCAAGGGGGAAGGCCGATTTGTGCCCGCACACAAGGACGTA
TTCGAAGATAATGCGTTGGCGGACGGGCAAGTGGGGTTGGTGTACCTGGA
GGGGGATGGCCGCATGCTGTTCCAGCACGAGGTGACGGGCGAGGAGACGG
TGGTAGATGTGCAGCCTGGGCGATTGATGTCGTGGGACAACAGTGTGTAC
ACGCACACTCTCATTCCCGGGGATCTGCCTCGTCGTATTCTGGGGCCGAT
GGCGTTTCGTGATGGAGGGATGCAGTCGATTGGGTCTGAGGCAACTCGTA
CCGTTGCTCAAGCGAGTACCAACTCCTTGACTGTGCGTCCAGGAAGGATC
ATCAAGGTGAACCTTAAGTTTATTGTCCTCGATGAGAACCCCATCCGCAA
GCGCGCGGTGCGGAAGTTGGAGAACGAGGACCTGGTGATCGGGGTAAGGA
CGGAGAGAGGAGAGGGGGGAGAACGGCGGAACGGAAAGAGGGAGGGAAGA
GCGAGGTTGCTTACCTTGCTGGTAGACATGATCACCACAGTCTACTGAGT
GACTGAAGGTCGCTGTTGCTCATACTGTGTTTCTTGCCCTGCGTATCGTG
TATCTTGCTATTGACCTGTTTCTCTGTCCCTCTCTCCTCTCTCGTTTCTC
CCACCCTCCACATCTCTCTCCAGTGCGGACTGATGGATCAGAACAGGCGA
ATGCTCGGGGGGCGCAACAAGACAACGAATGCGAACGATGATATCACATT
CGTAAACTCCAAGCTGAAGCCCAATTTCTACAAGCCGAAGTACGTATCTT
TGCCCCGCTTCCTCCCTGTCTGACGGATGTGGGAACGAGATATGGCGAGC
GTGTCTTTTGGGAGAAGAAAGCCAACTTTTCAGTGCCAGAGCTCATCGTC
CCTCTCTTCGTATTCTCCCTCGCTCTCTTGCTCCCTGCCAGGTTGACCTT
CAATAATACACTCGATGCTGTGTATTGGACCCTCCCGAGCGAGACGACGA
AAATCCTGCACCCGTACAAGATCACCTGGGCTTTCCGTGTGGGGAAGGGC
GTGCCGTCCGGTACGGTTGTCCCGATCGGTGTCGTTATTGAGGATGATAA
CACCCCAGAGTTCCTGGTCGAGCTGCGGGTGCTGGTGAAGTAA
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Coding sequence (CDS) from alignment at chr21:682982..684374-

>NO21G02260.1 ID=NO21G02260.1|Name=NO21G02260.1|organism=Nannochloropsis oceanica|type=CDS|length=1011bp|location=Sequence derived from alignment at chr21:682982..684374- (Nannochloropsis oceanica)
ATGCGACTCATTGCCTCCTCCCGGTCCCTCCTGCTGGCCGCCGCTGCTGC
TGCGCTCTGCCTCCCGTCGGCGCTCGCCCACATCACGGTGGAGGATAACT
TTCTCGACGAGGCTGCGCGCGAGGATATTCTGGCCCAGCTGCCGGGACAA
ACCCGTTTCAAGCACACGCTGGACGTGCCGGGCCAGCTGTACCAACGCCT
CATGTCCATCATCAACCCAAGCAACACCGATCTCTCTCACACGGAGACCT
CGGTGCCGGCCAAGGGGGAAGGCCGATTTGTGCCCGCACACAAGGACGTA
TTCGAAGATAATGCGTTGGCGGACGGGCAAGTGGGGTTGGTGTACCTGGA
GGGGGATGGCCGCATGCTGTTCCAGCACGAGGTGACGGGCGAGGAGACGG
TGGTAGATGTGCAGCCTGGGCGATTGATGTCGTGGGACAACAGTGTGTAC
ACGCACACTCTCATTCCCGGGGATCTGCCTCGTCGTATTCTGGGGCCGAT
GGCGTTTCGTGATGGAGGGATGCAGTCGATTGGGTCTGAGGCAACTCGTA
CCGTTGCTCAAGCGAGTACCAACTCCTTGACTGTGCGTCCAGGAAGGATC
ATCAAGGTGAACCTTAAGTTTATTGTCCTCGATGAGAACCCCATCCGCAA
GCGCGCGGTGCGGAAGTTGGAGAACGAGGACCTGGTGATCGGGTGCGGAC
TGATGGATCAGAACAGGCGAATGCTCGGGGGGCGCAACAAGACAACGAAT
GCGAACGATGATATCACATTCGTAAACTCCAAGCTGAAGCCCAATTTCTA
CAAGCCGAAGTTGACCTTCAATAATACACTCGATGCTGTGTATTGGACCC
TCCCGAGCGAGACGACGAAAATCCTGCACCCGTACAAGATCACCTGGGCT
TTCCGTGTGGGGAAGGGCGTGCCGTCCGGTACGGTTGTCCCGATCGGTGT
CGTTATTGAGGATGATAACACCCCAGAGTTCCTGGTCGAGCTGCGGGTGC
TGGTGAAGTAA
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Synonyms
Publications