NO21G02190.1, NO21G02190.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO21G02190.1
Unique Name	NO21G02190.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2676
Alignment location	chr21:645048..648417 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr21	genome	chr21:645048..648417 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO21G02190.1 vs.
Match: XP_005855837.1 (Cu/Zn superoxide dismutase [Nannochloropsis gaditana CCMP526]; EKU20510.1 Cu/Zn superoxide dismutase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 218.0 bits (554), Expect = 2.100e-53
Identity = 110/156 (70.51%), Postives = 119/156 (76.28%), Query Frame = 0

Query:    1 MARCVAIIRGAPGDMEMSIQGFIRFEQASETTPTIIDGVITGLAPGRHGLHVHTFGDFSEGLAGAGGIFNPFGKAHGAPDDEERMSGDLGNVEANAEGKAEFHLEDKHVRIIGAHSVIGRSVVVKAQEDDLGRGGQDQSLVTGNSGPRIAGGVIGI 157
            MARCVA+IRGAPGD E SIQG IRFEQASET PTI+DGVITGLAPGRHGLH+HTFGDFSEG AGAGGIFNPFGKAHGAPDD+ERM+GDLGN+EAN EGKAEF +E                            GG +QSLVTGNSG RIAGGV+GI
Sbjct:    1 MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGKAEFRVE----------------------------GGHEQSLVTGNSGARIAGGVVGI 128

The following BLAST results are available for this feature:

BLAST of NO21G02190.1 vs.

BLAST of NO21G02190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005855837.1	2.100e-53	70.51	Cu/Zn superoxide dismutase [Nannochloropsis gadita...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO21G02190	NO21G02190	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO21G02190.1	NO21G02190.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO21G02190.1.cds1	NO21G02190.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO21G02190.1.cds2	NO21G02190.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO21G02190.1.cds3	NO21G02190.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO21G02190.1.cds4	NO21G02190.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO21G02190.1.cds5	NO21G02190.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO21G02190.1.cds6	NO21G02190.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr21:645048..648417-
coding sequence from alignment at chr21:645048..648417-

mRNA sequence

>NO21G02190.1 ID=NO21G02190.1|Name=NO21G02190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2676bp
CTCACAAAACGTTGCGTCATCATCCTTCTTTCCCTTTGCACCCTCTCCCA
CTCAAAAACTGCCCACAGATATCAAAACCACGAGCTAGGCTTCATTAAGT
AGTAGCAGAAACTATTGAAATCGATGAACTTCTCGGGCACACAGCGTTTC
TATTGGTTTTTGGCTCGAGAAGTACCATGTTGTGAAGGCTCATCAACCTC
CCCAACAAGAAAATATGTGCCTTCAAATCTGTGCCAAGTGGGCGTGTATG
GGTTCTACAAATGCCATGCAAAGTGAGGATAAAATCTTCTCATGTATACG
ACAAAAGATTATGTTTGCTATATTCTGAGTACACAACCCTGGCCCTCAGT
GGTTGTAAATGGCCTCCAAACCATGCCCTTTTCGCCGCTCAAGTCCCGTT
ATCCCTTTCCCGTTTGAAAAGTATCATCATCATGACTTATTTTCCATTTT
TTCCCTCCTTCTTTTACACACCAGGGCCATAGCACCGCCTATCTCTTCCT
CTCTCCTCGCCTACTCGCCTCAATTTATTGACAGCCCCTTTCACGTAAAG
CCAATTACGAGCAACACCACTAAAACAATCAGCAACACGACGATGCACAA
ATACAACCGACACACAGTGCTCTGCTCCCGAAGGCGTTGTGCATGCCGCG
CTTCCAACCTCAAGGACGACGCTGCCGCCTCCACATCGCCATCGATATCA
TCCAACAGCTTCTGATGCATCGTCGTCTCGTCCCTTATTGTCAGCCCCTT
CATCTTCAACCTATCCACACCCTTCCCCAGATCCTCTAACAACTCATCCT
GCTCACTAATAATCTCCCTTCGTTGCTGCGCCAGCGTCCGAGGTCCCATC
CCTCCTCCTCCTCCCACCCCTCCTCCAGAAAACGAAGAGGAAGCAGCGCC
AACTCCTCCACCAGCACTGGTACTACGATTGCTACTGTTGATGACAGAGG
CTTGTGTACGCAGGCCCTTGACCAGCTCCCGGCGACGCACGACCTCGGAC
TCGGTTCTATGGGAAGGAGGCAGGCAGGGAGGGAGGAAGGGAAGGAAGGA
CGGAGTGGTGTAAGTGACTGAGGAAGAGACATAAACCGAGCGATGAGAAA
ATCAAGGCTATTCGAAACCACCAAGTAAGGGTAAGGCTGTGTTTGGGAAG
GAGGCAGTGAAGGTGCAGGCGCGGGATCGGGGAGAGGGGAGAGACTGTTC
AGGAATTGGTGAAGACTTAAAACAGCGACAAGCCCTACGTCTTCGCCATC
TACACTACCACTACCCTATTTCTCTTTCTCATGAGTCTTGGGGATGTAAT
ATGTGCCAACAACCCTGGCACCCATGACGACGGTGGCAGACGGGAGTGAT
CAAATCATTCCCAATTCCCTCTCGTGCGGAACAAACACGTCACATACATA
TTTACACCTAGGTTGTGGGATAGCGCACTGCCGTCGTCTCTCGTCCGCTT
AGGCCCCCAAACAAACTTCCCCCCTTCTCCCGCTGCTTTCCCCTCAGCGG
TGAACAGACTTTGAAAAGCCCGCCCTACACAAGGTCCCTCTTTCCCTCCT
TCCCTCCCTCCCTTCTTCCAGAACGTACACGCCAAATTGCCCAGGATTTT
GCTCCATCAATCCCAAGCGGTAGTCGAGCTTGTCGATGCTCTGCTCGAGA
TTCGCCAGTTGCTGCCGCGACGAGGAGGAAGAGGAGGCAGGGGCGGAGGA
TGAGCTTCTAAGGTTTATGACAAATGCCCTTGAGCGTTTGTACTCCTCCG
TCCATTCCTTCGCGGTGAAGGACATGGTGATTGCCTAGTGCTGTGTGCAG
CGGCTGCCTGTGTGCAATGTGTATGATGTTTGTAGGTGCGAGTGGAAAGT
GTTGGGTCCATGGAACTGTGTCTCCGACAAAGCGGTAGTGTCGTCAAGCT
TTCTTCATCCCAAGGCCATCATTACTGCTCTCGAGGCCTAATCCCGAAAC
CACTCACATAAAGCATCAGAACATGTAGGCTTTCCATTTTGACAATAGAA
TTGTCATATGCGGTAGCGAAGTGTTGCTCGTCGCATTGATCCTGCGTTTC
AGTCTCATGGTTTTTCCCCCTTATCACTTGACCTCCCCCCCACCACCACA
CACCGATCAATCACTCCGCTTTCCACACTAACCCCAACCGACAAACCCGC
AAATACAGCAGTCAAGGCAATGGCAAGGTGCGTGGCAATTATTCGTGGTG
CCCCCGGTGACATGGAGATGTCCATTCAGGGGTTCATTCGCTTCGAGCAG
GCATCAGAAACGACGCCCACGATCATTGACGGCGTCATCACGGGCTTGGC
ACCCGGACGACATGGTCTGCACGTCCACACCTTCGGAGATTTCTCTGAGG
GTCTTGCAGGAGCAGGTGGGATCTTCAATCCGTTCGGCAAGGCTCACGGG
GCACCAGATGATGAAGAGCGCATGTCGGGAGACTTGGGTAACGTGGAGGC
CAACGCAGAGGGGAAGGCAGAGTTTCACCTGGAGGATAAGCACGTCCGCA
TTATAGGCGCTCATTCTGTCATTGGGCGCTCGGTGGTTGTCAAGGCGCAG
GAAGACGACCTTGGACGGGGTGGGCAGGACCAGTCGTTGGTCACGGGGAA
CTCGGGGCCACGCATCGCCGGTGGTGTGATTGGAATTGCACCCTCGATGT
GAAGGGGGGGGGAGGGGGAAGGGAGG

protein sequence of NO21G02190.1

>NO21G02190.1-protein ID=NO21G02190.1-protein|Name=NO21G02190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MARCVAIIRGAPGDMEMSIQGFIRFEQASETTPTIIDGVITGLAPGRHGL
HVHTFGDFSEGLAGAGGIFNPFGKAHGAPDDEERMSGDLGNVEANAEGKA
EFHLEDKHVRIIGAHSVIGRSVVVKAQEDDLGRGGQDQSLVTGNSGPRIA
GGVIGIAPSM*

mRNA from alignment at chr21:645048..648417-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO21G02190.1 ID=NO21G02190.1|Name=NO21G02190.1|organism=Nannochloropsis oceanica|type=mRNA|length=3370bp|location=Sequence derived from alignment at chr21:645048..648417- (Nannochloropsis oceanica)
CTCACAAAACGTTGCGTCATCATCCTTCTTTCCCTTTGCACCCTCTCCCA
CTCAAAAACTGCCCACAGATATCAAAACCACGAGCTAGGCTTCATTAAGT
AGTAGCAGAAACTATTGAAATCGATGAACTTCTCGGGCACACAGCGTTTC
TATTGGTTTTTGGCTCGAGAAGTACCATGTTGTGAAGGCTCATCAACCTC
CCCAACAAGAAAATATGTGCCTTCAAATCTGTGCCAAGTGGGCGTGTATG
GGTTCTACAAATGCCATGCAAAGTGAGGATAAAATCTTCTCATGTATACG
ACAAAAGATTATGTTTGCTATATTCTGAGTACACAACCCTGGCCCTCAGT
GGTTGTAAATGGCCTCCAAACCATGCCCTTTTCGCCGCTCAAGTCCCGTT
ATCCCTTTCCCGTTTGAAAAGTATCATCATCATGACTTATTTTCCATTTT
TTCCCTCCTTCTTTTACACACCAGGGCCATAGCACCGCCTATCTCTTCCT
CTCTCCTCGCCTACTCGCCTCAATTTATTGACAGCCCCTTTCACGTAAAG
CCAATTACGAGCAACACCACTAAAACAATCAGCAACACGACGATGCACAA
ATACAACCGACACACAGTGCTCTGCTCCCGAAGGCGTTGTGCATGCCGCG
CTTCCAACCTCAAGGACGACGCTGCCGCCTCCACATCGCCATCGATATCA
TCCAACAGCTTCTGATGCATCGTCGTCTCGTCCCTTATTGTCAGCCCCTT
CATCTTCAACCTATCCACACCCTTCCCCAGATCCTCTAACAACTCATCCT
GCTCACTAATAATCTCCCTTCGTTGCTGCGCCAGCGTCCGAGGTCCCATC
CCTCCTCCTCCTCCCACCCCTCCTCCAGAAAACGAAGAGGAAGCAGCGCC
AACTCCTCCACCAGCACTGGTACTACGATTGCTACTGTTGATGACAGAGG
CTTGTGTACGCAGGCCCTTGACCAGCTCCCGGCGACGCACGACCTCGGAC
TCGGTTCTATGGGAAGGAGGCAGGCAGGGAGGGAGGAAGGGAAGGAAGGA
CGGAGTGGTGTAAGTGACTGAGGAAGAGACATAAACCGAGCGATGAGAAA
ATCAAGGCTATTCGAAACCACCAAGTAAGGGTAAGGCTGTGTTTGGGAAG
GAGGCAGTGAAGGTGCAGGCGCGGGATCGGGGAGAGGGGAGAGACTGTTC
AGGAATTGGTGAAGACTTAAAACAGCGACAAGCCCTACGTCTTCGCCATC
TACACTACCACTACCCTATTTCTCTTTCTCATGAGTCTTGGGGATGTAAT
ATGTGCCAACAACCCTGGCACCCATGACGACGGTGGCAGACGGGAGTGAT
CAAATCATTCCCAATTCCCTCTCGTGCGGAACAAACACGTCACATACATA
TTTACACCTAGGTTGTGGGATAGCGCACTGCCGTCGTCTCTCGTCCGCTT
AGGCCCCCAAACAAACTTCCCCCCTTCTCCCGCTGCTTTCCCCTCAGCGG
TGAACAGACTTTGAAAAGCCCGCCCTACACAAGGTCCCTCTTTCCCTCCT
TCCCTCCCTCCCTTCTTCCAGAACGTACACGCCAAATTGCCCAGGATTTT
GCTCCATCAATCCCAAGCGGTAGTCGAGCTTGTCGATGCTCTGCTCGAGA
TTCGCCAGTTGCTGCCGCGACGAGGAGGAAGAGGAGGCAGGGGCGGAGGA
TGAGCTTCTAAGGTTTATGACAAATGCCCTTGAGCGTTTGTACTCCTCCG
TCCATTCCTTCGCGGTGAAGGACATGGTGATTGCCTAGTGCTGTGTGCAG
CGGCTGCCTGTGTGCAATGTGTATGATGTTTGTAGGTGCGAGTGGAAAGT
GTTGGGTCCATGGAACTGTGTCTCCGACAAAGCGGTAGTGTCGTCAAGCT
TTCTTCATCCCAAGGCCATCATTACTGCTCTCGAGGCCTAATCCCGAAAC
CACTCACATAAAGCATCAGAACATGTAGGCTTTCCATTTTGACAATAGAA
TTGTCATATGCGGTAGCGAAGTGTTGCTCGTCGCATTGATCCTGCGTTTC
AGTCTCATGGTTTTTCCCCCTTATCACTTGACCTCCCCCCCACCACCACA
CACCGATCAATCACTCCGCTTTCCACACTAACCCCAACCGACAAACCCGC
AAATACAGCAGTCAAGGCAATGGCAAGGTGCGTGGCAATTATTCGTGGTG
CCCCCGGTGACATGGAGATGTCCATTCAGGGGTTCATTCGCTTCGAGCAG
GTAGGCGGGAGGAAGGAAGGGGGGGAGGGCCAGGAGGGAGGTAGGACAAG
GCATTACCTCGGTATTTATCCACGCACTGCACATTTTAACCTGACACAGG
CATCAGAAACGACGCCCACGATCATTGACGGCGTCATCACGGGCTTGGCA
CCCGTAAGTAGATTACTTCCTCCTTCCCCCCTTCCCTCCCTCCATCCTTC
TGCTCACCCTCCCCTCCCTCACCTCTGCCTCACCACCATGACACATACAG
GGACGACATGGTCTGCACGTCCACACCTTCGGAGATTTCTCTGAGGGTCT
TGCAGGAGCAGGTACGCTTGTTTTTACTCTCCTGTCCCCCCCACTCTCTC
CTTCCTCGTCCTTCCGTGGAACAGATTTACGACCTCTCCCTCCTTCCCTC
CCTCCCTCCCCTTCTCCCTATCAGGTGGGATCTTCAATCCGTTCGGCAAG
GCTCACGGGGCACCAGATGATGAAGAGCGCATGTCGGGAGACTTGGGTAA
CGTGGAGGCCAACGCAGAGGGGAAGGCAGAGTTTCACCTGGAGGTGAGGC
AGGGAAGGAGGGAGAGACCGAGGGAAGGAAAGAAAGTGGATTGAAATGAA
GGGTGAGGGGGGATTCGCGTCGATGGACTTGGCACAGGCCAAGTCGGGAA
ATGAGGAGTCGAGGATTCTTTTCATACATGGCCATCGTCGATATCACAGT
CCTCATCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCCTCATATG
TCCCTCCCCTCTTCCCTCCATGATCCTTCTCTCCTCTTTAGGATAAGCAC
GTCCGCATTATAGGCGCTCATTCTGTCATTGGGCGCTCGGTGGTTGTCAA
GGCGCAGGAAGACGACCTTGGACGGGTAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGATCGGAGGATACCTATGTGGGGATGATCGTCGCTCTCTGCG
GCTCAACTTATATCCTCCCTTGCCTCCCTCACTCCGTTCGCCTCTCCCTT
GTTCCTGCGTAGGGTGGGCAGGACCAGTCGTTGGTCACGGGGAACTCGGG
GCCACGCATCGCCGGTGGTGTGATTGGAATTGCACCCTCGATGTGAAGGG
GGGGGGAGGGGGAAGGGAGG

Coding sequence (CDS) from alignment at chr21:645048..648417-

>NO21G02190.1 ID=NO21G02190.1|Name=NO21G02190.1|organism=Nannochloropsis oceanica|type=CDS|length=483bp|location=Sequence derived from alignment at chr21:645048..648417- (Nannochloropsis oceanica)
ATGGCAAGGTGCGTGGCAATTATTCGTGGTGCCCCCGGTGACATGGAGAT
GTCCATTCAGGGGTTCATTCGCTTCGAGCAGGCATCAGAAACGACGCCCA
CGATCATTGACGGCGTCATCACGGGCTTGGCACCCGGACGACATGGTCTG
CACGTCCACACCTTCGGAGATTTCTCTGAGGGTCTTGCAGGAGCAGGTGG
GATCTTCAATCCGTTCGGCAAGGCTCACGGGGCACCAGATGATGAAGAGC
GCATGTCGGGAGACTTGGGTAACGTGGAGGCCAACGCAGAGGGGAAGGCA
GAGTTTCACCTGGAGGATAAGCACGTCCGCATTATAGGCGCTCATTCTGT
CATTGGGCGCTCGGTGGTTGTCAAGGCGCAGGAAGACGACCTTGGACGGG
GTGGGCAGGACCAGTCGTTGGTCACGGGGAACTCGGGGCCACGCATCGCC
GGTGGTGTGATTGGAATTGCACCCTCGATGTGA

Synonyms

Publications