NO21G02160.2, NO21G02160.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G02160.2
Unique NameNO21G02160.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1636
Alignment locationchr21:635434..638184 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:635434..638184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G02160.2 vs.
Match: EWM22715.1 (dehydrogenase reductase sdr family member 9 [Nannochloropsis gaditana])

HSP 1 Score: 301.2 bits (770), Expect = 4.500e-78
Identity = 169/302 (55.96%), Postives = 207/302 (68.54%), Query Frame = 0 
Query:    2 TSPGGTVTTSGGNG---------KSDLPSLLLSAQQFVLQTTNNLLHLPYLYDLSWYIIWSFYILLAPVYLLSLALFLFYETLLSRTFWTGERYVGETKEKEGEGGREGGERAIFITGCDSGFGRDLALDLTAQSLEGWKEEGKEGRREGRR-RRWKVYAGCLSAEGRTTLARETTEAVKEGILTLLPLDVTNAGDIDAAVERIGRENEGQLFALVNNAGIGLAGLVDWMPLEHFQSTMDVNYFGIIRATKACLPLLKK-CALSDTAPPRIVIVTSFAGLVVGQLSMGAYCASKHAAEALGH 293
            TSP GT T S  NG         ++   S LL     +LQ TNN+LHLP L+DL+WY++W+FYI +AP YLL   LF   +TL +   +  ++        +G+ G    ERAI ITGCDSGFG DLA+ L A+SL   +EE KEGRRE  R RRWKVYAGCLSA GR  + +   EA   GIL  L LDVT A ++  AV+R+  E  G+LFALVNNAGIG+AGLVDW+P+EHF+  M+VNYFG+I  +KACLPLLKK  + +  APPRIV+VTSFAGLV GQLSMGAYCASKHAAEA G+
Sbjct:   62 TSPTGTSTRSDMNGDRQVTNVEKRASFSSFLLQLPNILLQATNNVLHLPILFDLAWYVVWAFYIAMAPFYLLCHILFFVLDTLFAIYSFARQKVKSLILFMKGKKGEAREERAILITGCDSGFGFDLAMALAAESLACREEEKKEGRREEPRGRRWKVYAGCLSATGREQITQRAPEAAAHGILVPLSLDVTQASEVATAVDRVRAECRGELFALVNNAGIGVAGLVDWVPMEHFRKIMEVNYFGMIAVSKACLPLLKKRASRACDAPPRIVLVTSFAGLVPGQLSMGAYCASKHAAEAFGY 363
The following BLAST results are available for this feature:
BLAST of NO21G02160.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22715.14.500e-7855.96dehydrogenase reductase sdr family member 9 [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G02160NO21G02160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G02160.2NO21G02160.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G02160.2.cds1NO21G02160.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02160.2.cds2NO21G02160.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02160.2.cds3NO21G02160.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02160.2.cds4NO21G02160.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02160.2.cds5NO21G02160.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02160.2.cds6NO21G02160.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02160.2.cds7NO21G02160.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02160.2.cds8NO21G02160.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G02160.2 ID=NO21G02160.2|Name=NO21G02160.2|organism=Nannochloropsis oceanica|type=mRNA|length=1636bp
AACAGCAGGTACATTAAACATGACCTCACCCGGCGGCACGGTCACCACCA
GTGGCGGAAATGGCAAAAGTGACCTTCCCTCTTTGCTACTATCCGCCCAG
CAGTTTGTCCTGCAAACCACCAACAACCTCCTCCACCTCCCTTACCTCTA
TGACCTGTCGTGGTACATCATATGGTCCTTCTACATTCTTCTAGCTCCTG
TGTATCTACTTAGCCTGGCGCTGTTTCTCTTCTACGAGACCCTGCTCTCT
CGAACCTTCTGGACGGGCGAGCGGTACGTGGGGGAAACGAAGGAAAAAGA
AGGGGAGGGAGGGAGGGAGGGAGGAGAGCGCGCCATCTTTATTACCGGAT
GTGATTCCGGCTTTGGTAGAGACCTTGCGTTGGACCTAACTGCGCAGAGC
CTGGAGGGATGGAAGGAGGAGGGGAAAGAGGGAAGGAGGGAGGGAAGAAG
GAGGAGATGGAAGGTGTATGCAGGGTGTCTCTCGGCGGAGGGACGGACGA
CGCTGGCGCGGGAGACAACAGAGGCCGTGAAGGAAGGCATCCTCACTCTA
CTACCCCTGGACGTGACCAATGCCGGGGACATTGACGCCGCGGTTGAAAG
GATCGGAAGAGAGAACGAAGGCCAGCTCTTCGCCCTAGTCAACAACGCAG
GCATCGGCTTGGCTGGCCTCGTGGACTGGATGCCCCTAGAGCATTTCCAA
AGCACCATGGACGTGAATTACTTTGGCATCATTCGCGCCACCAAAGCCTG
CTTGCCTCTCTTGAAAAAATGCGCGCTCTCCGACACCGCGCCTCCCCGCA
TCGTCATCGTTACGTCCTTTGCAGGCCTCGTGGTAGGCCAGCTGTCTATG
GGCGCTTACTGTGCCTCCAAGCACGCCGCCGAGGCCCTCGGGCACGCCCT
CCGCAGCGAATTAGAGTGCTGGGGTATCCACGTCCCTACCGTGAATCCCA
CGTTCCACCGCACCAAGCTCGTGGCCGATGCGAGCGGGACAGCTGTCAAG
GCGTTTAGGGGCATGAGCGAGGAGAAGCAGAAGGAATACGGAGAACCCTT
CATGATGGAGATCGTGCGCCTGTGTAACAGTGTCACCACCGCCGCCTCGT
GGGACCCCAAAAATGTCTTGCGTGCACTGCGGCATGCAACGACGGCGGTG
AGGTAGGAAGGGAGGGAGGAAGGGAAGGAGGGAGGAGGGGAGGAAGGGAG
GTGTGGATATCTGGCTTACTGGGGAACCTGACGAAAAATGGAGAGAGGGG
GGGAGGGAAAGAGGGAATTGCAGGTCGCCTCTGTCTTGTTTTAAACTTTG
TGTTGTCTCCATGACACAGCAATGCCTGTCGCCTCATCCTCCCTCCCTTC
CTCCCTCCCTTCGTTTTTCCCTCCCTCCCGGCAGCCCTCGTCGGCAATAT
CTTATCGGGATGGACGGGCGCTTCCTCCTCACCCCCTTGATGATGCTGCC
TGAGCGAGTCTCGGACATTTTGTCGTGGATCGGATCAGAACGCTATCGAC
TGCGCCCCGCGGCGCTGACGAGGAAGGGGGGGGGAAAGGGAGGGAAGGCT
GCATAGAGGAAGTAGAGGAAAGAGAGGAAGGAAGGAAGGGAGGGAGGGAG
GGAGAAAGGGTGGGGAATATTTTGTAAGGGATTTCG
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protein sequence of NO21G02160.2

>NO21G02160.2-protein ID=NO21G02160.2-protein|Name=NO21G02160.2|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MTSPGGTVTTSGGNGKSDLPSLLLSAQQFVLQTTNNLLHLPYLYDLSWYI
IWSFYILLAPVYLLSLALFLFYETLLSRTFWTGERYVGETKEKEGEGGRE
GGERAIFITGCDSGFGRDLALDLTAQSLEGWKEEGKEGRREGRRRRWKVY
AGCLSAEGRTTLARETTEAVKEGILTLLPLDVTNAGDIDAAVERIGRENE
GQLFALVNNAGIGLAGLVDWMPLEHFQSTMDVNYFGIIRATKACLPLLKK
CALSDTAPPRIVIVTSFAGLVVGQLSMGAYCASKHAAEALGHALRSELEC
WGIHVPTVNPTFHRTKLVADASGTAVKAFRGMSEEKQKEYGEPFMMEIVR
LCNSVTTAASWDPKNVLRALRHATTAVR*
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mRNA from alignment at chr21:635434..638184+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02160.2 ID=NO21G02160.2|Name=NO21G02160.2|organism=Nannochloropsis oceanica|type=mRNA|length=2751bp|location=Sequence derived from alignment at chr21:635434..638184+ (Nannochloropsis oceanica)
AACAGCAGGTACATTAAACATGACCTCACCCGGCGGCACGGTCACCACCA
GTGGCGGAAATGGCAAAAGTACGTAATGAGTTGGAAGTGAAGGAGACAGA
CAAGAGGGCAGGGCAGTCAAGCGGAATGCGCAGACGTGCCGTAACTATTC
TTATAAACCATTCGTGCTATCCGTACGCTCCTGACCTCGCATTCATCCCT
CTCCCCCTCACTCTCCTCAGGTGACCTTCCCTCTTTGCTACTATCCGCCC
AGCAGTTTGTCCTGCAAACCACCAACAACCTCCTCCACCTCCCTTACCTC
TATGACCTGTCGTGGTACATCATATGGTCCTTCTACATTCTTCTAGCTCC
TGTGTATCTACTTAGCCTGGCGCTGTTTCTCTTCTACGAGACCCTGCTCT
CTCGAACCTTCTGGACGGGCGAGCGGTACGTGGGGGAAACGAAGGTACGT
GCAGAGGGAGAGAGGGAGGGATGGAAAGAGCTGTGCCTTGATCTAGAAAG
AGGAGGAAACTACAGAATACGAAGCGAGACGCTGACCGTGATCTACCACT
TTTACGATAGGAAAAAGAAGGGGAGGGAGGGAGGGAGGGAGGAGAGCGCG
CCATCTTTATTACCGGATGTGATTCCGGCTTTGGTAGAGACCTTGCGTTG
GACCTAACTGCGCAGAGCCTGGAGGGATGGAAGGAGGAGGGGAAAGAGGG
AAGGAGGGAGGGAAGAAGGAGGAGATGGAAGGTGTATGCAGGGTGTCTCT
CGGCGGAGGGACGGACGACGCTGGCGCGGGAGACAACAGAGGCCGTGAAG
GAAGGTGGGTCAGAAGAGTGGGCGGATGTCTACCTTCCCGCCCTCCCTCC
CTCCCTCCCTCTTTCCTCCCCTTTCTGACTCTCTTTTTTCTCAATATGCT
GCTAGATGTGAATAAGGCTTTGTGACACTACCCCTCCCCCCTCCCTCTCT
TCCTCCCTCTCTCCCTTCCTCCTTCCCACCACAGGCATCCTCACTCTACT
ACCCCTGGACGTGACCAATGCCGGGGACATTGACGCCGCGGTTGAAAGGA
TCGGAAGAGAGAACGAAGGCCAGCTCTTCGCCCTAGTCAACAACGCAGGT
ACGCCTCCCTCCCTCCTTCCCTCCCTTCCTTCCTCTCTTCCTCCCTCCCT
TCTTCTTTTTGAACATGGATCAAAGCCCGGGACGTTCACACCGTGGTCTC
CCTCCTCCCTCCTTCCTTCCCTCCTTCCCTCCATCCCTCCATCCCTTTCT
AAGGCATCGGCTTGGCTGGCCTCGTGGACTGGATGCCCCTAGAGCATTTC
CAAAGCACCATGGACGTGAATTACTTTGGCATCATTCGCGCCACCAAAGC
CTGCTTGCCTCTCTTGAAAAAATGCGCGCTCTCCGACACCGCGGTAAGTC
TCCCCTGTCCTCCTTCCCTCCTTCTCCTCCCTCCCTCCCTCTCTCTTTCC
TTCTTCATCATCTCCCTTACAAATCTCGCTTGAGGCCAACCCTGCATGTT
ATCCCCCCCCTTCCCCCCTTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTC
CTTCCTTCCTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCCCTCCCT
CCCTCCCTCCCTTCCTTCCTTCCTCCCCCGCTTAGCCTCCCCGCATCGTC
ATCGTTACGTCCTTTGCAGGCCTCGTGGTAGGCCAGCTGTCTATGGGCGC
TTACTGTGCCTCCAAGCACGCCGCCGAGGCCCTCGGGTAGGGAGGAAGGG
AGGGAGGGAAGGAGGGAGGGAAGGAGAAAGGGAAGGGTTTAAGTAGTCCA
CATGGTCTTGATTTCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTTCAGGCACGCCCTCCGCAGCGAATTAGAGTGCTGGGGTATCCAC
GTCCCTACCGTGAATCCCACGTTCCACCGCACCAAGCTCGTGGCCGATGC
GAGCGGGACAGCTGTCAAGGCGTTTAGGGGCATGAGCGAGGAGAAGCAGA
AGGAATACGGAGAAGTAGGACGGGAGGGAGGAAGGGAGGGAGGGAGGGAG
GGAAGGAGGTCACTAAGATTTGTGGACCCTCGTGATTATTGTGCGCGAGA
TAGATGGCCTCCCCTCCTGAACTATCCCTCCCTCCCTCCCTCCCTTCCTC
CCTCCCTCAGCCCTTCATGATGGAGATCGTGCGCCTGTGTAACAGTGTCA
CCACCGCCGCCTCGTGGGACCCCAAAAATGTCTTGCGTGCACTGCGGCAT
GCAACGACGGCGGTGAGGTAGGAAGGGAGGGAGGAAGGGAAGGAGGGAGG
AGGGGAGGAAGGGAGGTGTGGATATCTGGCTTACTGGGGAACCTGACGAA
AAATGGAGAGAGGGGGGGAGGGAAAGAGGGAATTGCAGGTCGCCTCTGTC
TTGTTTTAAACTTTGTGTTGTCTCCATGACACAGCAATGCCTGTCGCCTC
ATCCTCCCTCCCTTCCTCCCTCCCTTCGTTTTTCCCTCCCTCCCGGCAGC
CCTCGTCGGCAATATCTTATCGGGATGGACGGGCGCTTCCTCCTCACCCC
CTTGATGATGCTGCCTGAGCGAGTCTCGGACATTTTGTCGTGGATCGGAT
CAGAACGCTATCGACTGCGCCCCGCGGCGCTGACGAGGAAGGGGGGGGGA
AAGGGAGGGAAGGCTGCATAGAGGAAGTAGAGGAAAGAGAGGAAGGAAGG
AAGGGAGGGAGGGAGGGAGAAAGGGTGGGGAATATTTTGTAAGGGATTTC
G
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Coding sequence (CDS) from alignment at chr21:635434..638184+

>NO21G02160.2 ID=NO21G02160.2|Name=NO21G02160.2|organism=Nannochloropsis oceanica|type=CDS|length=1137bp|location=Sequence derived from alignment at chr21:635434..638184+ (Nannochloropsis oceanica)
ATGACCTCACCCGGCGGCACGGTCACCACCAGTGGCGGAAATGGCAAAAG
TGACCTTCCCTCTTTGCTACTATCCGCCCAGCAGTTTGTCCTGCAAACCA
CCAACAACCTCCTCCACCTCCCTTACCTCTATGACCTGTCGTGGTACATC
ATATGGTCCTTCTACATTCTTCTAGCTCCTGTGTATCTACTTAGCCTGGC
GCTGTTTCTCTTCTACGAGACCCTGCTCTCTCGAACCTTCTGGACGGGCG
AGCGGTACGTGGGGGAAACGAAGGAAAAAGAAGGGGAGGGAGGGAGGGAG
GGAGGAGAGCGCGCCATCTTTATTACCGGATGTGATTCCGGCTTTGGTAG
AGACCTTGCGTTGGACCTAACTGCGCAGAGCCTGGAGGGATGGAAGGAGG
AGGGGAAAGAGGGAAGGAGGGAGGGAAGAAGGAGGAGATGGAAGGTGTAT
GCAGGGTGTCTCTCGGCGGAGGGACGGACGACGCTGGCGCGGGAGACAAC
AGAGGCCGTGAAGGAAGGCATCCTCACTCTACTACCCCTGGACGTGACCA
ATGCCGGGGACATTGACGCCGCGGTTGAAAGGATCGGAAGAGAGAACGAA
GGCCAGCTCTTCGCCCTAGTCAACAACGCAGGCATCGGCTTGGCTGGCCT
CGTGGACTGGATGCCCCTAGAGCATTTCCAAAGCACCATGGACGTGAATT
ACTTTGGCATCATTCGCGCCACCAAAGCCTGCTTGCCTCTCTTGAAAAAA
TGCGCGCTCTCCGACACCGCGCCTCCCCGCATCGTCATCGTTACGTCCTT
TGCAGGCCTCGTGGTAGGCCAGCTGTCTATGGGCGCTTACTGTGCCTCCA
AGCACGCCGCCGAGGCCCTCGGGCACGCCCTCCGCAGCGAATTAGAGTGC
TGGGGTATCCACGTCCCTACCGTGAATCCCACGTTCCACCGCACCAAGCT
CGTGGCCGATGCGAGCGGGACAGCTGTCAAGGCGTTTAGGGGCATGAGCG
AGGAGAAGCAGAAGGAATACGGAGAACCCTTCATGATGGAGATCGTGCGC
CTGTGTAACAGTGTCACCACCGCCGCCTCGTGGGACCCCAAAAATGTCTT
GCGTGCACTGCGGCATGCAACGACGGCGGTGAGGTAG
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Synonyms
Publications