NO21G02130.1, NO21G02130.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO21G02130.1
Unique Name	NO21G02130.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1670
Alignment location	chr21:630539..632208 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr21	genome	chr21:630539..632208 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO21G02130.1 vs.

BLAST of NO21G02130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO21G02130	NO21G02130	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO21G02130.1	NO21G02130.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO21G02130.1.cds1	NO21G02130.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr21:630539..632208+
coding sequence from alignment at chr21:630539..632208+

mRNA sequence

>NO21G02130.1 ID=NO21G02130.1|Name=NO21G02130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1670bp
TTTCCGTCTACTCGCTCGACCGCTTCTACTTTCGGGCATGCTGGCGCTTT
CATCGCCTACCTTAACCCACCATTCACCGCTTTCGTCGCTTACATTTATT
TTCCAACTCACAGGCGCACAGCCATAAACAGTCACGTATGGCAATATGTT
GACCTCTACTACCTCTAATGCCGGTCACAAAGACCGCAGCCGCAGCTGAT
GTGTCCTCTGTGAATGATGACCTCCTGCCTTTCGGAGAGATTCCAAGACA
TTTCCTGAACTCCTCGATCGTGGCAGCAAACCCTCCCTCCAGACTTGTAT
GAATTTATCGGATCATTTCTCCGAATTTCCCTATGAGGAGACGTTGGTGC
CTGAAGGCGTTCACACAGAGACTTTCCAATGCCATTTCCCTGGGAAGCCG
TTGATGAAAAATGTTTCCTCGATTTCTATTTTCTGACATGGATACTCCGG
ATTTTTATTCATTCGAGGTAATAATGGCCAAGGTTGCGGAAGACGGGAAA
ATAACGCAGAAGGAAGAGAAGAGGGAGGCCAAGCGGCATGGAGGCCGGCA
GGGAGGCGGAGAGAGAGGCGAAGAGAATAAGGAGAAGGCTTAATTCTTCT
CTTATTCAGCCATCCATGCCAGAGTTTCTTCATGCGTGGATCCCATTGCA
AGACTGAGACTTGTATCATCTTGTCGAAGGCGACGCACTCCTAGGCTGGC
CAAGTACTTGCCGCATGCGGGCGACTGAAGGTTGTGAGACTGGGTAGTCA
TGGGATGATAGCAGGGTCCGGGCGACCGAAAGTTGGAACCAAAATGGAAA
CAACGACCGCCACTTAGCTCCCGACCCTCGTTTTCTCGGATTCGGAATAT
CGAAATGCCCACGCCAGCGTCTTTGGCGACCAATCGACATACGCGATTGA
CTTTCCGGCAGAGATGAACTGTAGATTTGGCAGAGGGGGTACAAAAATAG
CGCTAGAGCTACAAGAAGAGGGTAGTATACATTTGGTTTCCGCTAGTCAA
ATCCTTTTTGACTTTGATGTTCATGGGCAAAGAGGGTTGTGACCCAAGAA
TGACAAGATTTACCTTGTGAGAATGTAGGAGACTTCATATGCCCCATAAT
TGTTGCTGCGCGACGAGGCATCATCTCTTTTCAGTGAATATTTTTGCTTG
CTTCGCCTCGCGTTTATTCCCATTGGACAGTTTTCACTTCACGGGAAAGG
TCTTACGGATTAAGTTGGAAGAGAAAGCGTGCTGGTATAATCTTTCACGA
CCCAAGCGATTGTTGGTTGGACTTGGATGGGATATGATGAATTGGATTGG
TTATTTTATTTAGGGAGGTTGGACTAGACGTACTGAGTGGTCTGGGCTAA
TACAAGCAGAGGCGTAGTTCGGTGACTAGGGTCCTTTTATGCGATTGAAG
CAAAAGGCAACACGAGCACTAGCAACCATTGCTAGAATTCGTGCAGCACT
TGCAAGAGGAAGGGAGAAGGGAAAGAGAAAGATAGTGAGGGCGCTCCGAC
GAGGAGGAAGAGGGGGAGGGAAAGGAGGGGAAGGACGAGGGGAAAGAGGG
CAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGAGGAGGA
GGAGGAAGAGGAGGAGGAGGAAGAAGAGGGAGAAGAAGAAGGAGGAGAGG
AAGAGGAAGAGGAGGAATAA

protein sequence of NO21G02130.1

>NO21G02130.1-protein ID=NO21G02130.1-protein|Name=NO21G02130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=94bp
MRLKQKATRALATIARIRAALARGREKGKRKIVRALRRGGRGGGKGGEGR
GERGQEEEEEEEEEEEEEEEEEEEEEEEEEGEEEGGEEEEEEE*

mRNA from alignment at chr21:630539..632208+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO21G02130.1 ID=NO21G02130.1|Name=NO21G02130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1670bp|location=Sequence derived from alignment at chr21:630539..632208+ (Nannochloropsis oceanica)
TTTCCGTCTACTCGCTCGACCGCTTCTACTTTCGGGCATGCTGGCGCTTT
CATCGCCTACCTTAACCCACCATTCACCGCTTTCGTCGCTTACATTTATT
TTCCAACTCACAGGCGCACAGCCATAAACAGTCACGTATGGCAATATGTT
GACCTCTACTACCTCTAATGCCGGTCACAAAGACCGCAGCCGCAGCTGAT
GTGTCCTCTGTGAATGATGACCTCCTGCCTTTCGGAGAGATTCCAAGACA
TTTCCTGAACTCCTCGATCGTGGCAGCAAACCCTCCCTCCAGACTTGTAT
GAATTTATCGGATCATTTCTCCGAATTTCCCTATGAGGAGACGTTGGTGC
CTGAAGGCGTTCACACAGAGACTTTCCAATGCCATTTCCCTGGGAAGCCG
TTGATGAAAAATGTTTCCTCGATTTCTATTTTCTGACATGGATACTCCGG
ATTTTTATTCATTCGAGGTAATAATGGCCAAGGTTGCGGAAGACGGGAAA
ATAACGCAGAAGGAAGAGAAGAGGGAGGCCAAGCGGCATGGAGGCCGGCA
GGGAGGCGGAGAGAGAGGCGAAGAGAATAAGGAGAAGGCTTAATTCTTCT
CTTATTCAGCCATCCATGCCAGAGTTTCTTCATGCGTGGATCCCATTGCA
AGACTGAGACTTGTATCATCTTGTCGAAGGCGACGCACTCCTAGGCTGGC
CAAGTACTTGCCGCATGCGGGCGACTGAAGGTTGTGAGACTGGGTAGTCA
TGGGATGATAGCAGGGTCCGGGCGACCGAAAGTTGGAACCAAAATGGAAA
CAACGACCGCCACTTAGCTCCCGACCCTCGTTTTCTCGGATTCGGAATAT
CGAAATGCCCACGCCAGCGTCTTTGGCGACCAATCGACATACGCGATTGA
CTTTCCGGCAGAGATGAACTGTAGATTTGGCAGAGGGGGTACAAAAATAG
CGCTAGAGCTACAAGAAGAGGGTAGTATACATTTGGTTTCCGCTAGTCAA
ATCCTTTTTGACTTTGATGTTCATGGGCAAAGAGGGTTGTGACCCAAGAA
TGACAAGATTTACCTTGTGAGAATGTAGGAGACTTCATATGCCCCATAAT
TGTTGCTGCGCGACGAGGCATCATCTCTTTTCAGTGAATATTTTTGCTTG
CTTCGCCTCGCGTTTATTCCCATTGGACAGTTTTCACTTCACGGGAAAGG
TCTTACGGATTAAGTTGGAAGAGAAAGCGTGCTGGTATAATCTTTCACGA
CCCAAGCGATTGTTGGTTGGACTTGGATGGGATATGATGAATTGGATTGG
TTATTTTATTTAGGGAGGTTGGACTAGACGTACTGAGTGGTCTGGGCTAA
TACAAGCAGAGGCGTAGTTCGGTGACTAGGGTCCTTTTATGCGATTGAAG
CAAAAGGCAACACGAGCACTAGCAACCATTGCTAGAATTCGTGCAGCACT
TGCAAGAGGAAGGGAGAAGGGAAAGAGAAAGATAGTGAGGGCGCTCCGAC
GAGGAGGAAGAGGGGGAGGGAAAGGAGGGGAAGGACGAGGGGAAAGAGGG
CAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGAGGAGGA
GGAGGAAGAGGAGGAGGAGGAAGAAGAGGGAGAAGAAGAAGGAGGAGAGG
AAGAGGAAGAGGAGGAATAA

Coding sequence (CDS) from alignment at chr21:630539..632208+

>NO21G02130.1 ID=NO21G02130.1|Name=NO21G02130.1|organism=Nannochloropsis oceanica|type=CDS|length=282bp|location=Sequence derived from alignment at chr21:630539..632208+ (Nannochloropsis oceanica)
ATGCGATTGAAGCAAAAGGCAACACGAGCACTAGCAACCATTGCTAGAAT
TCGTGCAGCACTTGCAAGAGGAAGGGAGAAGGGAAAGAGAAAGATAGTGA
GGGCGCTCCGACGAGGAGGAAGAGGGGGAGGGAAAGGAGGGGAAGGACGA
GGGGAAAGAGGGCAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGA
GGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGAAGAAGAGGGAGAAGAAG
AAGGAGGAGAGGAAGAGGAAGAGGAGGAATAA

Synonyms

Publications