NO21G02090.1, NO21G02090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G02090.1
Unique NameNO21G02090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1052
Alignment locationchr21:618753..619804 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:618753..619804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G02090.1 vs.
Match: EWM22712.1 (vacuolar sorting protein [Nannochloropsis gaditana])

HSP 1 Score: 89.7 bits (221), Expect = 1.600e-14
Identity = 55/97 (56.70%), Postives = 67/97 (69.07%), Query Frame = 0 
Query:    1 MLALQSRAIDQCTKAVKADKAGEDRLALYYYKESLRLLMEWLTLEKENGAREALKKRIRGYMARAEELKDVLTA--AAQRHHEESGASATTMTNITD 96
            MLALQSRAID  +KAVKAD+AGE R A ++YKESL  L+EWL LEK   AR+ALK +I GYM RAEELK +L     A+R   E   S++ +T   D
Sbjct:    1 MLALQSRAIDHSSKAVKADRAGERRRAFFHYKESLVHLIEWLKLEKAATARDALKVKIHGYMTRAEELKMLLDIGNGARRTTSEVECSSSPITTRAD 97
The following BLAST results are available for this feature:
BLAST of NO21G02090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
1002003004005006007008009001000SequenceEWM22712.1
Match NameE-valueIdentityDescription
EWM22712.11.600e-1456.70vacuolar sorting protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G02090NO21G02090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G02090.1NO21G02090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G02090.1.cds1NO21G02090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G02090.1 ID=NO21G02090.1|Name=NO21G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1052bp
GTCCACTTTCCCCTCCCCAAACCTCCCGCTCACATACATTTGGAACCATT
TTCCTGACTCAAAAAATAAACATCCCTTCACCCTTATCACTATACCACAC
ACTAAGCGGCCCGAAATGCTAGCTCTCCAATCCCGGGCCATCGACCAATG
CACTAAGGCGGTTAAGGCAGACAAGGCAGGGGAAGACCGCCTCGCCCTCT
ACTACTACAAAGAAAGCCTCCGTCTATTGATGGAATGGTTAACGCTCGAA
AAGGAGAATGGAGCACGAGAGGCCTTGAAAAAACGCATTCGGGGGTACAT
GGCGCGGGCGGAGGAACTCAAGGATGTGTTGACTGCCGCGGCGCAGAGGC
ACCATGAGGAGAGCGGGGCGTCGGCGACGACGATGACAAACATTACTGAC
AAGGGCACCAGAGCTGGTGGCAAAAGTAAGAATAGTAACAACACGATAAT
AGATGCCGGCGAGAACAGCAACAGCGGGTGCAGCTGTGGTAGTAACAGAA
CTTTCCCTGCCACAGCCACCACGATCATCGGCACCGAGGTCGGGCCTCAG
CAGGACGGCAACACCGCCCCTATCCAGGTTGTAGAGGGTGAGAAAGAGCA
CGATACAGACATTATCCATTATCGTATGGGATGCACGCCCGTAGTGCCAC
TCCCTGATTCGGATGCTATTCATTCTAGTATCAATGCACTCTGTGAGGAA
GAGCTGAGGGAGCGGGAGGCATGGTTGCGAGAGTGGGAAGCAGCACTGGT
GGCCAAAGACCTCGAGCTGCAGTGGAGGGTGAAGGAGGTGAGCACAATGG
AAAAGCGAGTAGAGGCACAGAAGAGGGAGATACAGGGTGAGGATGAGAGG
AAGAAAGAGTCGACAAAGAAGAAGATGGGAGGTGTGGAGGGTGGCGAGGC
AGCGGTGGGAGGGAAGCCTGGAAAAGATCGAGTGAGAAATGAGGAGAAGG
CGCTTACTCCTTCGAATAAAAGAGATAAGGAGGAGACACAGGGAGAGCGT
AGAAAATAAGCGACTCCGTGAAAGTTTTTTGAAAATTGTTAGTTATTTCG
GG
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protein sequence of NO21G02090.1

>NO21G02090.1-protein ID=NO21G02090.1-protein|Name=NO21G02090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MLALQSRAIDQCTKAVKADKAGEDRLALYYYKESLRLLMEWLTLEKENGA
REALKKRIRGYMARAEELKDVLTAAAQRHHEESGASATTMTNITDKGTRA
GGKSKNSNNTIIDAGENSNSGCSCGSNRTFPATATTIIGTEVGPQQDGNT
APIQVVEGEKEHDTDIIHYRMGCTPVVPLPDSDAIHSSINALCEEELRER
EAWLREWEAALVAKDLELQWRVKEVSTMEKRVEAQKREIQGEDERKKEST
KKKMGGVEGGEAAVGGKPGKDRVRNEEKALTPSNKRDKEETQGERRK*
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mRNA from alignment at chr21:618753..619804+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02090.1 ID=NO21G02090.1|Name=NO21G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1052bp|location=Sequence derived from alignment at chr21:618753..619804+ (Nannochloropsis oceanica)
GTCCACTTTCCCCTCCCCAAACCTCCCGCTCACATACATTTGGAACCATT
TTCCTGACTCAAAAAATAAACATCCCTTCACCCTTATCACTATACCACAC
ACTAAGCGGCCCGAAATGCTAGCTCTCCAATCCCGGGCCATCGACCAATG
CACTAAGGCGGTTAAGGCAGACAAGGCAGGGGAAGACCGCCTCGCCCTCT
ACTACTACAAAGAAAGCCTCCGTCTATTGATGGAATGGTTAACGCTCGAA
AAGGAGAATGGAGCACGAGAGGCCTTGAAAAAACGCATTCGGGGGTACAT
GGCGCGGGCGGAGGAACTCAAGGATGTGTTGACTGCCGCGGCGCAGAGGC
ACCATGAGGAGAGCGGGGCGTCGGCGACGACGATGACAAACATTACTGAC
AAGGGCACCAGAGCTGGTGGCAAAAGTAAGAATAGTAACAACACGATAAT
AGATGCCGGCGAGAACAGCAACAGCGGGTGCAGCTGTGGTAGTAACAGAA
CTTTCCCTGCCACAGCCACCACGATCATCGGCACCGAGGTCGGGCCTCAG
CAGGACGGCAACACCGCCCCTATCCAGGTTGTAGAGGGTGAGAAAGAGCA
CGATACAGACATTATCCATTATCGTATGGGATGCACGCCCGTAGTGCCAC
TCCCTGATTCGGATGCTATTCATTCTAGTATCAATGCACTCTGTGAGGAA
GAGCTGAGGGAGCGGGAGGCATGGTTGCGAGAGTGGGAAGCAGCACTGGT
GGCCAAAGACCTCGAGCTGCAGTGGAGGGTGAAGGAGGTGAGCACAATGG
AAAAGCGAGTAGAGGCACAGAAGAGGGAGATACAGGGTGAGGATGAGAGG
AAGAAAGAGTCGACAAAGAAGAAGATGGGAGGTGTGGAGGGTGGCGAGGC
AGCGGTGGGAGGGAAGCCTGGAAAAGATCGAGTGAGAAATGAGGAGAAGG
CGCTTACTCCTTCGAATAAAAGAGATAAGGAGGAGACACAGGGAGAGCGT
AGAAAATAAGCGACTCCGTGAAAGTTTTTTGAAAATTGTTAGTTATTTCG
GG
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Coding sequence (CDS) from alignment at chr21:618753..619804+

>NO21G02090.1 ID=NO21G02090.1|Name=NO21G02090.1|organism=Nannochloropsis oceanica|type=CDS|length=894bp|location=Sequence derived from alignment at chr21:618753..619804+ (Nannochloropsis oceanica)
ATGCTAGCTCTCCAATCCCGGGCCATCGACCAATGCACTAAGGCGGTTAA
GGCAGACAAGGCAGGGGAAGACCGCCTCGCCCTCTACTACTACAAAGAAA
GCCTCCGTCTATTGATGGAATGGTTAACGCTCGAAAAGGAGAATGGAGCA
CGAGAGGCCTTGAAAAAACGCATTCGGGGGTACATGGCGCGGGCGGAGGA
ACTCAAGGATGTGTTGACTGCCGCGGCGCAGAGGCACCATGAGGAGAGCG
GGGCGTCGGCGACGACGATGACAAACATTACTGACAAGGGCACCAGAGCT
GGTGGCAAAAGTAAGAATAGTAACAACACGATAATAGATGCCGGCGAGAA
CAGCAACAGCGGGTGCAGCTGTGGTAGTAACAGAACTTTCCCTGCCACAG
CCACCACGATCATCGGCACCGAGGTCGGGCCTCAGCAGGACGGCAACACC
GCCCCTATCCAGGTTGTAGAGGGTGAGAAAGAGCACGATACAGACATTAT
CCATTATCGTATGGGATGCACGCCCGTAGTGCCACTCCCTGATTCGGATG
CTATTCATTCTAGTATCAATGCACTCTGTGAGGAAGAGCTGAGGGAGCGG
GAGGCATGGTTGCGAGAGTGGGAAGCAGCACTGGTGGCCAAAGACCTCGA
GCTGCAGTGGAGGGTGAAGGAGGTGAGCACAATGGAAAAGCGAGTAGAGG
CACAGAAGAGGGAGATACAGGGTGAGGATGAGAGGAAGAAAGAGTCGACA
AAGAAGAAGATGGGAGGTGTGGAGGGTGGCGAGGCAGCGGTGGGAGGGAA
GCCTGGAAAAGATCGAGTGAGAAATGAGGAGAAGGCGCTTACTCCTTCGA
ATAAAAGAGATAAGGAGGAGACACAGGGAGAGCGTAGAAAATAA
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Synonyms
Publications