Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:600312..604313 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G02040.1 vs.
Match: CBJ30684.1 (ATP-binding cassette, sub-family D, member 4 [Ectocarpus siliculosus])
HSP 1 Score: 216.1 bits (549), Expect = 4.700e-52
Identity = 160/424 (37.74%), Postives = 229/424 (54.01%), Query Frame = 0
Query: 170 RWMVPLTLVLSTAAYEVAGNRVMVVMSDFYVSITGHDIDLYLRTLWLSMLIVVAVVLCKTVQVLAIESLALQSRHRLQQHLHFLYFLPPSLPPSSPSEEEEEEEEEEEEEEVEVAHKRGSSSSSSSIGGSNGQRRRRRRGGGGGRRGRRGGGAYSILLPPLQPQQLEHPSESSSSSSPPPSLLDNPDHRLTSDVDLFTVKLSEVIGKTIAVPALIIYYTWYLAFIFGWTAPVACYVYFLVGAYVNALFFKPLIAAVYQQERLEGHFRYLHASIRGAVEPIALYGGWQVEKR---RAGQAFDSVCANRRRIILQHAPLYLSTFFFDYLGSVINYAAVGASVLWLTYASKATPSEISGLVAKGSFSCLYLINAFSTLLDASETVTDLGGLGSRLSELLH--GLSPSPP-SLPPSSSSSSSSRTITN 588
RW+ PL L ++ AYEV ++ V+SDFY++I+ D L+++ LW S+L+V V K + LA E+ AL R RL LH ++L +P + E + KRG +S ++G RGGG G ++ SP L+DNPD R+T+D + + V+ +T+ P L+ +YTWYL +FGW APVACYVYF+V + +N K ++ AVY +++ EG FRY HA +R E + G VE R R G++F++V +I +H PLYL T FFDYLGS++NYAAVG ++L+L+ A +EI+ LVA+GSFSCLYLI+AFS L ASE + +GG R++ELL GLS S + P S+ S R N
Sbjct: 120 RWVFPLILTVTATAYEVCAASILNVISDFYLAISTLDAQLFVQVLWRSLLVVTVVAALKAGRDLAKEACALVWRQRLVLFLH-SWYLRGKMPYVLSTGEAGRD-------------KRG-GASFGNVGAPGRVDGGCTRGGGNG--------------------------VAAGGESP---LIDNPDQRVTADAEALVAAFATVLHETLVAPGLVAFYTWYLVGMFGWVAPVACYVYFIVASAINWAVVKTVVPAVYWKDKAEGTFRYDHAWLRTHSESVVFCGVGAVEGRERDRLGESFNAVVTAWWEVIRRHVPLYLFTQFFDYLGSIVNYAAVGGAILYLSKAEGMGEAEIAALVARGSFSCLYLIDAFSKALRASEAASRMGGSARRVAELLRATGLSDSDARAFGPWSTEPSVRRPSRN 499
The following BLAST results are available for this feature:
BLAST of NO21G02040.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 2800 Expect = 4.70e-52 / Id = 37.74 Sequence CBJ30684.1
Match Name E-value Identity Description
CBJ30684.1 4.700e-52 37.74 ATP-binding cassette, sub-family D, member 4 [Ecto... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G02040.1 ID=NO21G02040.1|Name=NO21G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=2804bp back to top protein sequence of NO21G02040.1
>NO21G02040.1-protein ID=NO21G02040.1-protein|Name=NO21G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=929bp back to top mRNA from alignment at chr21:600312..604313+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02040.1 ID=NO21G02040.1|Name=NO21G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=4002bp|location=Sequence derived from alignment at chr21:600312..604313+ (Nannochloropsis oceanica)ATGCCGTGGTGGCCCAACTCTTTGTCAACATTA
CGGCCGCCGCATGTCCCAGACGACACCGAGGCCCTGCTTTCTCCCGCTTC
CCAAGAAGGCGGCACCACCAGCAACAGCAGCAACAGCAGCAGCAGCAGCA
GCGGCGCTGGACCTCCCCCGAGATCGCGGCGGTGGAGAAGAGGATGGCGA
CGTCCTGCCCCCTACACCGCGACTACAGCGGCTGCTGCCGCTCCTACTCC
CTTGTCTTCTCCCTCTTCTATCTCGGGGGCCGCACCCTTCAAAGCAGCAG
CCGGGGAGCAGCAGCCCCCACCATCGCATCCCCCTGTGTCTCGTCAAGAC
ATGGCACGGCTTCTTCGCCTCGCCCTGGACATAAAAGAGGTTCGTTACCT
CATCTCCTGTCAGTTTTTATCGTTTCGTGGTAAGGCGTTTCTTATGATGC
TGGTGACGTCTGACTCTCACCCCTCCCTTCCTCCCTCCCCTGCCCACAAC
TCCCTCTCTGCCCTCCCCCAGGGCCGGTGGATGGTGCCCCTCACGCTCGT
TCTCTCCACTGCTGCGTATGAAGTAGCGGGCAATAGGGTGATGGTCGTGA
TGTCTGATTTCTACGTTTCCATCACGGGGCACGACATCGACTTGTACTTA
CGCACGCTCTGGCTCTCGATGCTGATAGTAGTGGCGGTGGTGCTGTGCAA
G GTGAGGAAAGAGGGAGTGAGGAAGGGAGGGAGGGAAGAAGGGGAGCTGT
GATGGCAATGGCGCAATGCTAAACAAGGCATGGAAGGAGGGAGGGAGGGC
GAGGAGGGGAGGAAGGAGGAATGAGTCATTCAAGGGTGGTAGCAAGCCGG
CCCATCTGCCATAATTCCAATAAACCCCCCTCCCTCCCTCCCTTCCCCCA
CATCCTTCCTCCCTCCCCCCCCCAGACCGTGCAGGTGCTTGCGATCGAAT
CCCTGGCCCTCCAATCTCGACATCGGTTACAGCAACATCTACACTTCCTC
TACTTCCTCCCTCCCTCCCTCCCTCCCTCTTCCCCTTCCGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGTGGAGGTGGCACACAAGA
GGGGTAGCAGTAGCAGCAGTAGCAGCATTGGAGGCAGCAACGGTCAAAGA
AGAAGAAGAAGAAGAGGAGGAGGGGGAGGAAGAAGAGGAAGAAGGGGAGG
GGGGGCCTACTCCATCCTCCTTCCCCCTCTCCAACCCCAGCAGCTCGAGC
ACCCATCCGAGTCGTCATCCTCGTCCTCCCCCCCTCCCTCCCTTCTCGAT
AACCCTGATCACCGCCTCACCTCCGACGTGGACCTGTTCACCGTCAAGCT
CTCGGAGGTGATTGGAAAGACAATTGCCGTGCCCGCCCTCATCATTTACT
GTGAGTGCCGGCGAGACGAGGGAGGGCAAGGAGGGAAGGGAGGAAGGCGG
AGGGAGGAAGATGGAGGGAGGAAGACGGAGGGGGAGAAAGAAAAGGGGAG
GAAGAGGGCGCAGGGGAGCGGAAAGGAGCGCAGGAGGAGGGAAAGCTTTG
CATCGCTCATCTCCCTCCCTCCCGCCCTCCCTCCCTCCCTCGCTAGATAC
GTGGTATCTGGCGTTCATCTTCGGGTGGACCGCGCCTGTGGCCTGCTACG
TGTATTTTCTCGTAGGCGCCTACGTAAATGCCTTGTTTTTTAAGCCGCTG
ATCGCCGCGGTATACCAGCAG GTGCGGGAGGGAGGGAGGGAGGAAGGGAG
GGAGGGAGGGAAGCTCTTGCACAGAAGGGAGTAGAAGACTTCATCCTCCC
ACTCACCCACCCACGCATCCACCTCCTCTTTTTCACCTGACTTAGAATAG
ACACATGTCTCTTACTATCATTTACCTTGCATATACGCACGACCTCCCCT
AACCACGCCCTAAGACCAATGGAACGACTGGAAGGCCACTCTTGGTGCCT
GGACGATAACCTCCCACTCACCTATCCATCCATCACCGCCTCCTCCTGCA
CCCCTAACCTCCACCCACCAACCCGTATGCTCCCCGTACTCACATTTGTA
ACATAAAGGAACGACTGGAGGGTCATTTCAGGTACCTCCATGCCTCCATC
CGAGGAGCAGTGGAACCCATCGCGCTCTACGGGGGGTGGCAGGTGGAGAA
ACGACGGGCAGGGCAG GTAGGGAGGGAAGGAAGGAAGGAGGGAGGGAAGG
GGAGGGAAGGGAGGGACGGAGAGGACCACAAATGTATTGCATCTCTACTA
AAAGTCACCCTGCCCTTCCCCTCCCTTCCCTCCCTCCCTCCCTCAGGCAT
TTGACTCTGTTTGCGCGAATCGGAGGAGGATCATCCTCCAGCACGCCCCC
CTCTACCTCTCCACCTTCTTCTTCGACTATCTCGGATCTGTCATCAATTA
TGCAG GCACGTTACTCCTCCTTCCCCTCCCTCCCTCTCCCTCCCGCCCTC
CCACCTTCCCACCGAGCTCCTGCTCCAATCGACTCCTGACCTTCCCTCCC
TCCCTCCCTCTTTCCCTCCCTCCCTTCCTCCCTCCCTCCCTTCCTTCCCA
GCCGTGGGAGCCTCTGTGCTTTGGCTCACATACGCCAGCAAGGCCACTCC
CTCGGAGATCTCGGGCCTGGTGGCCAAGGGCTCCTTCAG GTACGGAAGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGTGAT
GATTCGAGACACACATGACTCCTTCGATCGAGAGATTACACCCAACGCGA
CCAAAATCTGACCAGCAAAACTTTCTCCCTCCCTCTCTCCCTCCTTTCCT
CTAGCTGCCTCTACCTCATCAACGCCTTCTCCACCCTTCTAGACGCTTCT
GAAACGGTCACAGACCTCGGCGGCCTCGGCTCTCGTCTCTCCGAGCTGCT
GCATGGACTTTCCCCCTCCCCTCCCTCCCTCCCTCCCTCCTCATCGTCGT
CCTCCTCCTCGCGGACAATCACCAACCCTGCGTCCTCCCAGGAAGAAAAC
GACCAAAATGATGACGAGGAAAACCGTTACACCCCTCCTCCTCCTCCTCC
TCCCTCCTCCCCGCCCTCCACTCCTTCGTCCTCCGCCCTCATCACCCCTC
CCTCCCCCCCTCCCTCCTCCTCCTCCTCCTCCTCCTCCGAACCCCTTCTC
CGCCTCTCTCATTTCTCCCTCCTCCTTCCCCCCTCCTCCTCCTGCCCTTC
CTCCCACCATCGATCCCTCTTCCTCCCCCTCTCCCTCTCCCTGCATTCCG
GTGAATTTCTTCTCCTTCGAGGCCCCAGCGGCGTTGGAAAGAGCTCGCTC
ATAAAGGCTATAGCTGGCCTCTTCCCCCACAGCTCTCAAATGGGGCGCCT
CGTCCTCCGTCCCTCCCTCCCCCCCTCCCTTCCTCGAGGAGGAGGAGAAA
GGAAAGAGGGAGGGGGAGTGTTTTTCGTACCGCAGGAGACGTACGTTTTC
CCGGGCTCGCTGTTGAGTCAGGTTGTCTACCCGGCAGTGGTGGAAGAAGG
AAGGCGGGAGGGAGGGGTGACTCCAGAGGGGGAGGGAAGGGCTTTAAGGG
CGTTGGAGGCCATGGGACTCCTGCATCTCTGTGGTGGCACCTCCTCCTCC
TCCTCCTTCTCTTTATCCTCCTCCTGCTGCTCCTCCTCCTCCACCTTCTC
TTCCACCTCCTCCTCCGCCTCCAAAGACACATCTCTTGCTCCCCCTCCCC
TTCCCTCCCTCCCTCCTTCCCTTTCTACCATTCACGGCGACTGGCAGGGA
CGCCTTTCGAGAGGGGAGGCTCAACGGCTGGCGTTGTGCAGGGTGCTGTT
CCACCGGCCCCTCCTTCTCTTCCTCGACGAGGCCACTGCAGGGATTGAGA
AAGAAATGGAACAAAAATTCTATGCATTGCTGAGGAGGGGGTGGGGGGAG
GGAGGGAGGGAGAGGGAGAGGGTGACGGTGGTGTCAACGGGGCACCGAGA
GAGTCTCGTCGGCCTGCATGATCGGGTCGTGAATCTGCAGGGGCCGGGGT
GA back to top Coding sequence (CDS) from alignment at chr21:600312..604313+
>NO21G02040.1 ID=NO21G02040.1|Name=NO21G02040.1|organism=Nannochloropsis oceanica|type=CDS|length=2787bp|location=Sequence derived from alignment at chr21:600312..604313+ (Nannochloropsis oceanica) back to top