NO21G02000.1, NO21G02000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G02000.1
Unique NameNO21G02000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2191
Alignment locationchr21:581939..584574 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:581939..584574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO21G02000.1 vs.
Match: EWM22701.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 308.1 bits (788), Expect = 6.400e-80
Identity = 196/368 (53.26%), Postives = 233/368 (63.32%), Query Frame = 0 
Query:   49 PVTASIAPGPAFPHSARLARRRLAATTRLFMSTSPSTDSTATTTPSPPPTSILPYPKLGDVVLVPGKWAGDFSIGQIRFLQKTTNGKKGEEKRESWIADVAPFKEIGEDLYRAEKGGRAGTYPVGDLKPLSYFFIGSSDAFKVPHKLVAVEEGEGGREGGVAQAKKKVPVQMAPAYTTEGFSILPPKLDQTVMEASREKYDDLKKRILSDTAIFGLVATGLTGVNA---EGGRY--GEGG---------------GEGGGEGGGIDQGSGGGLLRRSVGSTRFLVPVILIAGLAYKNLYVGGEEAAAGVAALGAAASGVTAGAVGGGGGG--GARPLFNYVPQDEFWAATLGFLSYRVPMLGREIGEI 395
            PVTA   P     + AR   R    T  +  STS  + + A  T  P PTS LPYP+LGDVVL PGKW GD  IGQIRFLQ T +G+ G+E    WIAD+ PFK++GEDLYRAEKG RA T+PV  L+PLS+F+IGSSDAFKVPHK  A  EG G         +++ PV+MAP Y TEGFS+ P K+D   MEA+R KY DLK+RIL+DTA FG +AT   G+NA   + G +  G  G               G+ GGEGGG+ +  GG L+ RSVG+TRFLVPV+LIA LAYKNLY+ G                      GGGG G  G R LFNYVPQDEFW+ATLGFLSYRVPMLGRE GE+
Sbjct:   46 PVTAPQLPSLDTLYFARSVPR----TINIVTSTSTDSKNNAFGTAPPAPTS-LPYPRLGDVVLFPGKWVGDTGIGQIRFLQLTGDGRGGKE----WIADLTPFKDVGEDLYRAEKGARARTFPVSALQPLSHFYIGSSDAFKVPHKEEAGGEGMG---------RRREPVRMAPGYRTEGFSLAPAKVDAEAMEAARSKYRDLKRRILTDTAAFGGLATVAVGLNAGVEDAGIFLAGVAGSVLYLVLLTQRADAMGQAGGEGGGLSKARGGSLVGRSVGATRFLVPVVLIAALAYKNLYMEG----------------------GGGGAGLAGGR-LFNYVPQDEFWSATLGFLSYRVPMLGREEGEV 372
The following BLAST results are available for this feature:
BLAST of NO21G02000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
200400600800100012001400160018002000Expect = 6.40e-80 / Id = 53.26SequenceEWM22701.1
Match NameE-valueIdentityDescription
EWM22701.16.400e-8053.26conserved unknown protein [Nannochloropsis gaditan... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G02000NO21G02000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G02000.1NO21G02000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G02000.1.cds1NO21G02000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02000.1.cds2NO21G02000.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02000.1.cds3NO21G02000.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G02000.1 ID=NO21G02000.1|Name=NO21G02000.1|organism=Nannochloropsis oceanica|type=mRNA|length=2191bp
ATGCGGTGCTCTCTCCTTTCCTCGGCCTGGGCCGCGCTGTTCTATACGTC
TTCGACTTCTGCCGTGGCTGGATTCGTGTGTGTCCTTCCCCAAGGTAGCA
TCACGTCCCTACGGAGAAGCGCTGCTCCGGCCGCCACTGCTGCACCTGTC
ACTGCTAGCATCGCGCCAGGTCCAGCCTTCCCTCATAGCGCGCGGTTGGC
ACGAAGGAGATTAGCGGCAACAACGAGGCTTTTTATGTCTACCTCCCCAT
CGACGGATAGCACGGCCACCACCACCCCTTCCCCCCCGCCAACCTCCATC
CTCCCTTACCCCAAGCTGGGTGACGTCGTTCTCGTGCCAGGGAAATGGGC
CGGTGATTTCAGCATAGGTCAAATCCGCTTCCTTCAAAAAACCACGAATG
GAAAGAAAGGAGAGGAGAAACGAGAGAGTTGGATCGCGGACGTCGCCCCC
TTCAAGGAGATTGGGGAGGACCTGTACCGAGCTGAGAAGGGAGGGAGGGC
AGGGACTTACCCTGTCGGTGATTTGAAACCTCTCTCTTACTTCTTCATCG
GTTCGTCGGACGCGTTCAAAGTGCCGCATAAATTGGTTGCGGTCGAGGAG
GGCGAGGGAGGGAGAGAGGGAGGGGTAGCCCAGGCCAAGAAAAAAGTGCC
TGTTCAGATGGCGCCTGCCTACACGACGGAGGGCTTCTCCATCCTCCCGC
CCAAGCTCGATCAAACAGTCATGGAGGCAAGCAGGGAGAAGTACGACGAT
TTGAAGAAGCGTATTCTGAGCGACACGGCGATCTTCGGCCTTGTCGCGAC
TGGGCTGACGGGCGTGAATGCCGAAGGCGGACGATATGGGGAGGGTGGGG
GGGAAGGAGGGGGGGAAGGAGGGGGGATTGATCAAGGGTCAGGGGGGGGG
TTGTTGCGGAGGAGTGTGGGGAGCACGAGATTTCTGGTGCCGGTGATTCT
GATTGCCGGCTTGGCCTACAAAAACTTGTATGTGGGAGGAGAAGAAGCAG
CAGCGGGTGTAGCAGCTTTGGGGGCTGCAGCTAGTGGTGTCACTGCTGGT
GCTGTTGGAGGAGGAGGAGGAGGAGGGGCAAGACCTCTGTTCAATTACGT
GCCACAAGATGAGTTTTGGGCGGCCACGCTGGGTTTTTTGAGTTATCGGG
TGCCGATGCTGGGGAGGGAGATAGGCGAGATTGTGACGAGGAGAAGCGAG
AAGAGCAAGGAGGAGGCGAAGAGCGTCGGAGGGTCTGTGAGGATGGGCTT
GGCGTTGGTGGACCGGCTGAAGGGAGGGGAGGAAGGGAGAGATGGGGGTG
GGGTGGTGGAGGCGGAGGCGGCAGGGGGAGCATACAGGAATGAAGTGACT
GTTCTGGTGGTGAGTGGGCCGGAGGGAATGAACAAAAGGGCATTGGCCAA
GAAGCTGGTGGAGGAGGACCCGTTGGAGAGGTACAAAGAGCCCGTGTGGG
TGACAACGAGGACGCCGAGGGAGGGGGAGAGGGATGGGATCGACTACCAC
TTTGTGGAAGATTTCGCGTTTCAGGTTATGAGGGAACGGGGAAATTTCTT
GGTGGCGTATAAGAAGGAGGGAGGGAAGGAGGCCGGGGGGGAGGGGGGGT
GGTATGGGTTAAGGCCTAGCGACCTAGAAGACGTGACAAGGAAGGAGGGG
AAGGTGTCAGTGCTTGCCTTAAATGCATACATGGCTGATAAATTACTGGC
GTTGAATAATGCGCGAATCATCGCAACGTGGGTGACCTTGAATACAGTCG
AACAATTGCGGGAACGGTATATGAAGAGAAAGAAGGAGGGCGGGGAGGGA
GCGATGGAGGAGGAGGTGGAGGCAGCGGTATCGAGAGCAACGGCAGCAAT
AGAGCATGCATTGTTGGGCGAGGCGGGACGGAGGGGGTTCTATGAACACA
CGATTTATGATGACAAGGGAGAGGAGGAGACGTTGAAAAAATTGAGGGAC
TTTGCAGATTTTGCCTTGAGCTTGTAGGAGGGCGGTGTTCTTTTCCACCT
TCTCTCCGTCATCGAGAGCGAGGTGCAGGAGAGAGGAAGGAAGGTATATT
CACGTTGAGTGGGGGGGGAGGAAGTGGCTATGTGAGAGATAAGGAAGCAG
ATAGGTAAGATCAATGATACTTCTAACAGAGCGTCAATGTCAACGATATT
AATCAACACGATGAATGAATCAAATGAAAGATACAGCGCAT
back to top

protein sequence of NO21G02000.1

>NO21G02000.1-protein ID=NO21G02000.1-protein|Name=NO21G02000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=659bp
MRCSLLSSAWAALFYTSSTSAVAGFVCVLPQGSITSLRRSAAPAATAAPV
TASIAPGPAFPHSARLARRRLAATTRLFMSTSPSTDSTATTTPSPPPTSI
LPYPKLGDVVLVPGKWAGDFSIGQIRFLQKTTNGKKGEEKRESWIADVAP
FKEIGEDLYRAEKGGRAGTYPVGDLKPLSYFFIGSSDAFKVPHKLVAVEE
GEGGREGGVAQAKKKVPVQMAPAYTTEGFSILPPKLDQTVMEASREKYDD
LKKRILSDTAIFGLVATGLTGVNAEGGRYGEGGGEGGGEGGGIDQGSGGG
LLRRSVGSTRFLVPVILIAGLAYKNLYVGGEEAAAGVAALGAAASGVTAG
AVGGGGGGGARPLFNYVPQDEFWAATLGFLSYRVPMLGREIGEIVTRRSE
KSKEEAKSVGGSVRMGLALVDRLKGGEEGRDGGGVVEAEAAGGAYRNEVT
VLVVSGPEGMNKRALAKKLVEEDPLERYKEPVWVTTRTPREGERDGIDYH
FVEDFAFQVMRERGNFLVAYKKEGGKEAGGEGGWYGLRPSDLEDVTRKEG
KVSVLALNAYMADKLLALNNARIIATWVTLNTVEQLRERYMKRKKEGGEG
AMEEEVEAAVSRATAAIEHALLGEAGRRGFYEHTIYDDKGEEETLKKLRD
FADFALSL*
back to top

mRNA from alignment at chr21:581939..584574-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02000.1 ID=NO21G02000.1|Name=NO21G02000.1|organism=Nannochloropsis oceanica|type=mRNA|length=2636bp|location=Sequence derived from alignment at chr21:581939..584574- (Nannochloropsis oceanica)
ATGCGGTGCTCTCTCCTTTCCTCGGCCTGGGCCGCGCTGTTCTATACGTC
TTCGACTTCTGCCGTGGCTGGATTCGTGTGTGTCCTTCCCCAAGGTAGCA
TCACGTCCCTACGGAGAAGCGCTGCTCCGGCCGCCACTGCTGCACCTGTC
ACTGCTAGCATCGCGCCAGGTCCAGCCTTCCCTCATAGCGCGCGGTTGGC
ACGAAGGAGATTAGCGGCAACAACGAGGCTTTTTATGTCTACCTCCCCAT
CGACGGATAGGTATATGCTTATTTGGCTTACTGGGAGGTCGAGACTTTCC
GCTCTCTCCTTCGCTTCCTCCTTCCTTCCCCTCCTGCTCACCATACCCAC
TGGCTCATACATTCCAGAGAGCAAAGATGAAAAATCCTTCATCAGGCTTG
AATTTCAGAGCATCCCTCCGTCCCTAGATATCCCCTCGTCTTCTACCCTT
CCTCCCTCCTCCTTGTCCACTCACACAGCACCACACCATCGCGAGCACTT
GTACTCCTTCGTTCCCCCCCTTCCCTCCCTCCTCTCCTAACCCAGAAAGT
TTGCAATCCCTTTCATGCAATCATAAAGACAAGCTAGCACACCCTCCCTA
CCTTCCTCCCTCCCTCCCTCCCACTCTTCCACAGCACGGCCACCACCACC
CCTTCCCCCCCGCCAACCTCCATCCTCCCTTACCCCAAGCTGGGTGACGT
CGTTCTCGTGCCAGGGAAATGGGCCGGTGATTTCAGCATAGGTCAAATCC
GCTTCCTTCAAAAAACCACGAATGGAAAGAAAGGAGAGGAGAAACGAGAG
AGTTGGATCGCGGACGTCGCCCCCTTCAAGGAGATTGGGGAGGACCTGTA
CCGAGCTGAGAAGGGAGGGAGGGCAGGGACTTACCCTGTCGGTGATTTGA
AACCTCTCTCTTACTTCTTCATCGGTTCGTCGGACGCGTTCAAAGTGCCG
CATAAATTGGTTGCGGTCGAGGAGGGCGAGGGAGGGAGAGAGGGAGGGGT
AGCCCAGGCCAAGAAAAAAGTGCCTGTTCAGATGGCGCCTGCCTACACGA
CGGAGGGCTTCTCCATCCTCCCGCCCAAGCTCGATCAAACAGTCATGGAG
GCAAGCAGGGAGAAGTACGACGATTTGAAGAAGCGTATTCTGAGCGACAC
GGCGATCTTCGGCCTTGTCGCGACTGGGCTGACGGGCGTGAATGCCGGTG
TGAAGGACGCGGAGATATTTCTGGCTGGGGTGGTGGGGAGTTTGGTTTAT
CTTGTCTTGTTGACGCAGAAGGCGGACGATATGGGGAGGGTGGGGGGGAA
GGAGGGGGGGAAGGAGGGGGGATTGATCAAGGGTCAGGGGGGGGGTTGTT
GCGGAGGAGTGTGGGGAGCACGAGATTTCTGGTGCCGGTGATTCTGATTG
CCGGCTTGGCCTACAAAAACTTGTATGTGGGAGGAGAAGAAGCAGCAGCG
GGTGTAGCAGCTTTGGGGGCTGCAGCTAGTGGTGTCACTGCTGGTGCTGT
TGGAGGAGGAGGAGGAGGAGGGGCAAGACCTCTGTTCAATTACGTGCCAC
AAGATGAGTTTTGGGCGGCCACGCTGGGTTTTTTGAGTTATCGGGTGCCG
ATGCTGGGGAGGGAGATAGGCGAGATTGTGACGAGGAGAAGCGAGAAGAG
CAAGGAGGAGGCGAAGAGCGTCGGAGGGTCTGTGAGGATGGGCTTGGCGT
TGGTGGACCGGCTGAAGGGAGGGGAGGAAGGGAGAGATGGGGGTGGGGTG
GTGGAGGCGGAGGCGGCAGGGGGAGCATACAGGAATGAAGTGACTGTTCT
GGTGGTGAGTGGGCCGGAGGGAATGAACAAAAGGGCATTGGCCAAGAAGC
TGGTGGAGGAGGACCCGTTGGAGAGGTACAAAGAGCCCGTGTGGGTGACA
ACGAGGACGCCGAGGGAGGGGGAGAGGGATGGGATCGACTACCACTTTGT
GGAAGATTTCGCGTTTCAGGTTATGAGGGAACGGGGAAATTTCTTGGTGG
CGTATAAGAAGGAGGGAGGGAAGGAGGCCGGGGGGGAGGGGGGGTGGTAT
GGGTTAAGGCCTAGCGACCTAGAAGACGTGACAAGGAAGGAGGGGAAGGT
GTCAGTGCTTGCCTTAAATGCATACATGGCTGATAAATTACTGGCGTTGA
ATAATGCGCGAATCATCGCAACGTGGGTGACCTTGAATACAGTCGAACAA
TTGCGGGAACGGTATATGAAGAGAAAGAAGGAGGGCGGGGAGGGAGCGAT
GGAGGAGGAGGTGGAGGCAGCGGTATCGAGAGCAACGGCAGCAATAGAGC
ATGCATTGTTGGGCGAGGCGGGACGGAGGGGGTTCTATGAACACACGATT
TATGATGACAAGGGAGAGGAGGAGACGTTGAAAAAATTGAGGGACTTTGC
AGATTTTGCCTTGAGCTTGTAGGAGGGCGGTGTTCTTTTCCACCTTCTCT
CCGTCATCGAGAGCGAGGTGCAGGAGAGAGGAAGGAAGGTATATTCACGT
TGAGTGGGGGGGGAGGAAGTGGCTATGTGAGAGATAAGGAAGCAGATAGG
TAAGATCAATGATACTTCTAACAGAGCGTCAATGTCAACGATATTAATCA
ACACGATGAATGAATCAAATGAAAGATACAGCGCAT
back to top

Coding sequence (CDS) from alignment at chr21:581939..584574-

>NO21G02000.1 ID=NO21G02000.1|Name=NO21G02000.1|organism=Nannochloropsis oceanica|type=CDS|length=1977bp|location=Sequence derived from alignment at chr21:581939..584574- (Nannochloropsis oceanica)
ATGCGGTGCTCTCTCCTTTCCTCGGCCTGGGCCGCGCTGTTCTATACGTC
TTCGACTTCTGCCGTGGCTGGATTCGTGTGTGTCCTTCCCCAAGGTAGCA
TCACGTCCCTACGGAGAAGCGCTGCTCCGGCCGCCACTGCTGCACCTGTC
ACTGCTAGCATCGCGCCAGGTCCAGCCTTCCCTCATAGCGCGCGGTTGGC
ACGAAGGAGATTAGCGGCAACAACGAGGCTTTTTATGTCTACCTCCCCAT
CGACGGATAGCACGGCCACCACCACCCCTTCCCCCCCGCCAACCTCCATC
CTCCCTTACCCCAAGCTGGGTGACGTCGTTCTCGTGCCAGGGAAATGGGC
CGGTGATTTCAGCATAGGTCAAATCCGCTTCCTTCAAAAAACCACGAATG
GAAAGAAAGGAGAGGAGAAACGAGAGAGTTGGATCGCGGACGTCGCCCCC
TTCAAGGAGATTGGGGAGGACCTGTACCGAGCTGAGAAGGGAGGGAGGGC
AGGGACTTACCCTGTCGGTGATTTGAAACCTCTCTCTTACTTCTTCATCG
GTTCGTCGGACGCGTTCAAAGTGCCGCATAAATTGGTTGCGGTCGAGGAG
GGCGAGGGAGGGAGAGAGGGAGGGGTAGCCCAGGCCAAGAAAAAAGTGCC
TGTTCAGATGGCGCCTGCCTACACGACGGAGGGCTTCTCCATCCTCCCGC
CCAAGCTCGATCAAACAGTCATGGAGGCAAGCAGGGAGAAGTACGACGAT
TTGAAGAAGCGTATTCTGAGCGACACGGCGATCTTCGGCCTTGTCGCGAC
TGGGCTGACGGGCGTGAATGCCGAAGGCGGACGATATGGGGAGGGTGGGG
GGGAAGGAGGGGGGGAAGGAGGGGGGATTGATCAAGGGTCAGGGGGGGGG
TTGTTGCGGAGGAGTGTGGGGAGCACGAGATTTCTGGTGCCGGTGATTCT
GATTGCCGGCTTGGCCTACAAAAACTTGTATGTGGGAGGAGAAGAAGCAG
CAGCGGGTGTAGCAGCTTTGGGGGCTGCAGCTAGTGGTGTCACTGCTGGT
GCTGTTGGAGGAGGAGGAGGAGGAGGGGCAAGACCTCTGTTCAATTACGT
GCCACAAGATGAGTTTTGGGCGGCCACGCTGGGTTTTTTGAGTTATCGGG
TGCCGATGCTGGGGAGGGAGATAGGCGAGATTGTGACGAGGAGAAGCGAG
AAGAGCAAGGAGGAGGCGAAGAGCGTCGGAGGGTCTGTGAGGATGGGCTT
GGCGTTGGTGGACCGGCTGAAGGGAGGGGAGGAAGGGAGAGATGGGGGTG
GGGTGGTGGAGGCGGAGGCGGCAGGGGGAGCATACAGGAATGAAGTGACT
GTTCTGGTGGTGAGTGGGCCGGAGGGAATGAACAAAAGGGCATTGGCCAA
GAAGCTGGTGGAGGAGGACCCGTTGGAGAGGTACAAAGAGCCCGTGTGGG
TGACAACGAGGACGCCGAGGGAGGGGGAGAGGGATGGGATCGACTACCAC
TTTGTGGAAGATTTCGCGTTTCAGGTTATGAGGGAACGGGGAAATTTCTT
GGTGGCGTATAAGAAGGAGGGAGGGAAGGAGGCCGGGGGGGAGGGGGGGT
GGTATGGGTTAAGGCCTAGCGACCTAGAAGACGTGACAAGGAAGGAGGGG
AAGGTGTCAGTGCTTGCCTTAAATGCATACATGGCTGATAAATTACTGGC
GTTGAATAATGCGCGAATCATCGCAACGTGGGTGACCTTGAATACAGTCG
AACAATTGCGGGAACGGTATATGAAGAGAAAGAAGGAGGGCGGGGAGGGA
GCGATGGAGGAGGAGGTGGAGGCAGCGGTATCGAGAGCAACGGCAGCAAT
AGAGCATGCATTGTTGGGCGAGGCGGGACGGAGGGGGTTCTATGAACACA
CGATTTATGATGACAAGGGAGAGGAGGAGACGTTGAAAAAATTGAGGGAC
TTTGCAGATTTTGCCTTGAGCTTGTAG
back to top
Synonyms
Publications