Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr21 | genome | chr21:566784..568657 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G01910.1 vs.
Match: XP_005854130.1 (molecular chaperone, partial [Nannochloropsis gaditana CCMP526]; EKU22228.1 molecular chaperone, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 505.4 bits (1300), Expect = 1.700e-139 Identity = 261/336 (77.68%), Postives = 291/336 (86.61%), Query Frame = 0 Query: 1 MDWKSWAFFCLVLCVFFVSAASFDFFQSRSTSGGSF--GYGGFPGGAGGFYRPGGGGSGAGEGANNEE-YYSILGIPKTSTLTEVKRAYRHKVVKLHPDKGGDEKQFKALQEAYEVLSDPAKRRLYDTYGKAGVEAGAG--GGRGGPSPEDIFSSFFGRGRP-GQGGGGGPRRSPNLFLQVDLTLEELYKGTSRKVKLNRQKVVEKRIVLEPKILEAAFERGMKDGGRVVLAGEAEGLGNTVPGDIIIQVRELKHPTFVRRNADLLCEMKVSLTEALTGFERPLRHLDGRQLWVKGKAGQVTRPGSVWILEGEGMPLQGEPSSHGRLFIKFSVEFP 331
M+ K+WAF CL+ C+ S SFDFFQSR+TSGGSF G GGFPGG GGFYRP GG G G +++ YY+ LGIPKTSTL+EVKRAYR VV+LHPDKGGDEK FKALQEAYEVLSDPAKRRLYD YGKAGVE G+G GGR PED+FSSFFG GR G GG GGPRRSPNL+LQV+LTLEEL+KG +RKV+LNRQKVV++R+V+EPK+LEAAFERGM+DG R+VLAGEAEGLGN PGDIIIQVRELKHPTFVRRNADLLCEMKV+LTEALTGFERPLRHLDGRQLWVKGKAGQVTRPGSVW+LEGEGMP++GEPS GRLFIKF+V FP
Sbjct: 1 MERKAWAFICLIWCILIASTTSFDFFQSRTTSGGSFFGGSGGFPGGPGGFYRPDSGGDGENGGDSDQGGYYATLGIPKTSTLSEVKRAYRRLVVRLHPDKGGDEKAFKALQEAYEVLSDPAKRRLYDAYGKAGVEMGSGAQGGR----PEDVFSSFFGSGRARGFGGTGGPRRSPNLYLQVELTLEELFKGATRKVRLNRQKVVDRRLVVEPKVLEAAFERGMQDGARLVLAGEAEGLGNAAPGDIIIQVRELKHPTFVRRNADLLCEMKVTLTEALTGFERPLRHLDGRQLWVKGKAGQVTRPGSVWLLEGEGMPVRGEPSLRGRLFIKFAVVFP 332
The following BLAST results are available for this feature:
BLAST of NO21G01910.1 vs.
Analysis Date: 2017-10-25 ( Homology annotation for N. oceanica IMET1)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| XP_005854130.1 | 1.700e-139 | 77.68 | molecular chaperone, partial [Nannochloropsis gadi... | [more] |
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO21G01910.1 ID=NO21G01910.1|Name=NO21G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1677bp
AAGAAGGAGCTCTGGCAGCGCCGAAGAAAAGACGTGGACGCACGCGTAAA
GAGAGGTACACTTATTAAAAACCTCCCCGAGCGGTCGACTCCTACTCGTG
CGGCTCCGCCACCGCCGCACAACACAACGCACCGACATATACTACCAGCG
TAAACTATGGACTGGAAGTCATGGGCCTTCTTTTGCCTGGTACTGTGCGT
TTTCTTCGTCTCGGCGGCCTCGTTTGATTTTTTCCAATCCCGTTCCACGA
GCGGTGGCAGCTTCGGTTACGGCGGCTTTCCAGGTGGCGCAGGTGGCTTC
TACCGCCCTGGCGGCGGTGGCAGCGGTGCTGGCGAAGGAGCAAATAATGA
AGAATATTATTCTATCCTAGGCATTCCTAAAACGAGTACCTTGACCGAAG
TGAAACGCGCGTACCGTCATAAAGTTGTGAAACTCCACCCTGATAAAGGA
GGGGACGAGAAACAATTCAAGGCCTTGCAAGAAGCGTATGAAGTCTTGTC
TGACCCGGCCAAAAGAAGATTATACGACACCTACGGCAAGGCAGGTGTTG
AGGCAGGGGCCGGGGGAGGAAGGGGTGGCCCAAGCCCGGAAGATATTTTC
TCGTCATTTTTTGGGAGGGGGCGACCAGGACAAGGGGGAGGAGGAGGACC
CCGGAGGAGCCCCAATTTGTTTTTACAGGTCGATTTGACATTGGAAGAGC
TATATAAAGGAACGAGTAGGAAAGTTAAATTGAATAGACAGAAAGTGGTG
GAGAAACGGATTGTGCTGGAGCCCAAGATTTTGGAAGCGGCCTTTGAGAG
GGGCATGAAAGATGGAGGGAGGGTGGTCTTGGCGGGGGAGGCGGAGGGGC
TTGGAAACACGGTACCAGGCGACATTATTATTCAAGTGCGGGAGCTCAAA
CACCCTACCTTTGTGCGGCGTAACGCTGATCTCCTTTGTGAGATGAAAGT
CTCTCTGACAGAAGCCTTGACTGGCTTTGAACGGCCCCTGCGTCACTTGG
ACGGAAGGCAGCTTTGGGTCAAGGGGAAGGCGGGGCAGGTGACCAGGCCG
GGGAGTGTGTGGATCTTGGAGGGAGAGGGTATGCCCCTGCAGGGTGAGCC
CTCCTCACATGGCCGCCTGTTCATAAAATTCTCGGTGGAGTTTCCGGTTA
GTCTGGCTAAGATGAGTAAGGAGGAAGTCGAGAGGTTGAAGGAGATCTTG
CCGAAAGCCCCGGTGTTTGTGAAAGGGGAGAAAGCGGAGGAAGCGCCTGT
GCTGAAGGCTGGTGATCCTCGTTCTTTTGGCACGGTGGGGTCAGGGAGAG
GAGGAGGGGAGAGGGCGTGGGAGGAGGAGGAGGACGAGGATGAGGAAGAT
GCGGGGATGGGCTTTGGAGGGTACGGGGGAATGCCGAGGGGAGAGCAGGT
GCAGTGCTCGCAACAGTAGGAGAAGGAGCGAGAGGGGGTGCCCTCGTAGA
AAGGGAGGAAGGTCGCATGCGTAAGCGCAAGTGTGCTGCCCTTCCATGGA
CAGAGGAAAACCAAAGTAAAATCGAAGAAAGAGAGTGTGCATGTACACTA
CCGGGAGGATCCTACCACGAAATAAAAATATCAGCCACGGAATTGAAAGA
GGGCATCAAAATCATCAAGCAACCACCTGAAAGCTTCCATCCTGCATCCC
TTTTTCGCTTAAGTGGTATGACACCTC back to topprotein sequence of NO21G01910.1 >NO21G01910.1-protein ID=NO21G01910.1-protein|Name=NO21G01910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=421bp
MDWKSWAFFCLVLCVFFVSAASFDFFQSRSTSGGSFGYGGFPGGAGGFYR
PGGGGSGAGEGANNEEYYSILGIPKTSTLTEVKRAYRHKVVKLHPDKGGD
EKQFKALQEAYEVLSDPAKRRLYDTYGKAGVEAGAGGGRGGPSPEDIFSS
FFGRGRPGQGGGGGPRRSPNLFLQVDLTLEELYKGTSRKVKLNRQKVVEK
RIVLEPKILEAAFERGMKDGGRVVLAGEAEGLGNTVPGDIIIQVRELKHP
TFVRRNADLLCEMKVSLTEALTGFERPLRHLDGRQLWVKGKAGQVTRPGS
VWILEGEGMPLQGEPSSHGRLFIKFSVEFPVSLAKMSKEEVERLKEILPK
APVFVKGEKAEEAPVLKAGDPRSFGTVGSGRGGGERAWEEEEDEDEEDAG
MGFGGYGGMPRGEQVQCSQQ* back to topmRNA from alignment at chr21:566784..568657- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO21G01910.1 ID=NO21G01910.1|Name=NO21G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1874bp|location=Sequence derived from alignment at chr21:566784..568657- (Nannochloropsis oceanica)
AAGAAGGAGCTCTGGCAGCGCCGAAGAAAAGACGTGGACGCACGCGTAAA
GAGAGGTACACTTATTAAAAACCTCCCCGAGCGGTCGACTCCTACTCGTG
CGGCTCCGCCACCGCCGCACAACACAACGCACCGACATATACTACCAGCG
TAAACTATGGACTGGAAGTCATGGGCCTTCTTTTGCCTGGTACTGTGCGT
TTTCTTCGTCTCGGCGGCCTCGTTTGATTTTTTCCAAGTAAGGATCTGTG
TGTGCTGAGCTGTGGGTACGTGGGGGTCATGCGGTGGCATCCTTTTGTGT
ATGGGACTTGCCCGTGTCCATCGCCATCCGTCATTGTTGCTATACATACA
CTTTCCTTTCTGCTTTCTTCTCACTCTCCCTTCACTCATAAATATCCTCC
CTCTCCCTGCTCTTCCCCAAATCCTCTTGCACAGTCCCGTTCCACGAGCG
GTGGCAGCTTCGGTTACGGCGGCTTTCCAGGTGGCGCAGGTGGCTTCTAC
CGCCCTGGCGGCGGTGGCAGCGGTGCTGGCGAAGGAGCAAATAATGAAGA
ATATTATTCTATCCTAGGCATTCCTAAAACGAGTACCTTGACCGAAGTGA
AACGCGCGTACCGTCATAAAGTTGTGAAACTCCACCCTGATAAAGGAGGG
GACGAGAAACAATTCAAGGCCTTGCAAGAAGCGTATGAAGTCTTGTCTGA
CCCGGCCAAAAGAAGATTATACGACACCTACGGCAAGGCAGGTGTTGAGG
CAGGGGCCGGGGGAGGAAGGGGTGGCCCAAGCCCGGAAGATATTTTCTCG
TCATTTTTTGGGAGGGGGCGACCAGGACAAGGGGGAGGAGGAGGACCCCG
GAGGAGCCCCAATTTGTTTTTACAGGTCGATTTGACATTGGAAGAGCTAT
ATAAAGGAACGAGTAGGAAAGTTAAATTGAATAGACAGAAAGTGGTGGAG
AAACGGATTGTGCTGGAGCCCAAGATTTTGGAAGCGGCCTTTGAGAGGGG
CATGAAAGATGGAGGGAGGGTGGTCTTGGCGGGGGAGGCGGAGGGGCTTG
GAAACACGGTACCAGGCGACATTATTATTCAAGTGCGGGAGCTCAAACAC
CCTACCTTTGTGCGGCGTAACGCTGATCTCCTTTGTGAGATGAAAGTCTC
TCTGACAGAAGCCTTGACTGGCTTTGAACGGCCCCTGCGTCACTTGGACG
GAAGGCAGCTTTGGGTCAAGGGGAAGGCGGGGCAGGTGACCAGGCCGGGG
AGTGTGTGGATCTTGGAGGGAGAGGGTATGCCCCTGCAGGGTGAGCCCTC
CTCACATGGCCGCCTGTTCATAAAATTCTCGGTGGAGTTTCCGGTTAGTC
TGGCTAAGATGAGTAAGGAGGAAGTCGAGAGGTTGAAGGAGATCTTGCCG
AAAGCCCCGGTGTTTGTGAAAGGGGAGAAAGCGGAGGAAGCGCCTGTGCT
GAAGGCTGGTGATCCTCGTTCTTTTGGCACGGTGGGGTCAGGGAGAGGAG
GAGGGGAGAGGGCGTGGGAGGAGGAGGAGGACGAGGATGAGGAAGATGCG
GGGATGGGCTTTGGAGGGTACGGGGGAATGCCGAGGGGAGAGCAGGTGCA
GTGCTCGCAACAGTAGGAGAAGGAGCGAGAGGGGGTGCCCTCGTAGAAAG
GGAGGAAGGTCGCATGCGTAAGCGCAAGTGTGCTGCCCTTCCATGGACAG
AGGAAAACCAAAGTAAAATCGAAGAAAGAGAGTGTGCATGTACACTACCG
GGAGGATCCTACCACGAAATAAAAATATCAGCCACGGAATTGAAAGAGGG
CATCAAAATCATCAAGCAACCACCTGAAAGCTTCCATCCTGCATCCCTTT
TTCGCTTAAGTGGTATGACACCTC back to topCoding sequence (CDS) from alignment at chr21:566784..568657- >NO21G01910.1 ID=NO21G01910.1|Name=NO21G01910.1|organism=Nannochloropsis oceanica|type=CDS|length=1263bp|location=Sequence derived from alignment at chr21:566784..568657- (Nannochloropsis oceanica)
ATGGACTGGAAGTCATGGGCCTTCTTTTGCCTGGTACTGTGCGTTTTCTT
CGTCTCGGCGGCCTCGTTTGATTTTTTCCAATCCCGTTCCACGAGCGGTG
GCAGCTTCGGTTACGGCGGCTTTCCAGGTGGCGCAGGTGGCTTCTACCGC
CCTGGCGGCGGTGGCAGCGGTGCTGGCGAAGGAGCAAATAATGAAGAATA
TTATTCTATCCTAGGCATTCCTAAAACGAGTACCTTGACCGAAGTGAAAC
GCGCGTACCGTCATAAAGTTGTGAAACTCCACCCTGATAAAGGAGGGGAC
GAGAAACAATTCAAGGCCTTGCAAGAAGCGTATGAAGTCTTGTCTGACCC
GGCCAAAAGAAGATTATACGACACCTACGGCAAGGCAGGTGTTGAGGCAG
GGGCCGGGGGAGGAAGGGGTGGCCCAAGCCCGGAAGATATTTTCTCGTCA
TTTTTTGGGAGGGGGCGACCAGGACAAGGGGGAGGAGGAGGACCCCGGAG
GAGCCCCAATTTGTTTTTACAGGTCGATTTGACATTGGAAGAGCTATATA
AAGGAACGAGTAGGAAAGTTAAATTGAATAGACAGAAAGTGGTGGAGAAA
CGGATTGTGCTGGAGCCCAAGATTTTGGAAGCGGCCTTTGAGAGGGGCAT
GAAAGATGGAGGGAGGGTGGTCTTGGCGGGGGAGGCGGAGGGGCTTGGAA
ACACGGTACCAGGCGACATTATTATTCAAGTGCGGGAGCTCAAACACCCT
ACCTTTGTGCGGCGTAACGCTGATCTCCTTTGTGAGATGAAAGTCTCTCT
GACAGAAGCCTTGACTGGCTTTGAACGGCCCCTGCGTCACTTGGACGGAA
GGCAGCTTTGGGTCAAGGGGAAGGCGGGGCAGGTGACCAGGCCGGGGAGT
GTGTGGATCTTGGAGGGAGAGGGTATGCCCCTGCAGGGTGAGCCCTCCTC
ACATGGCCGCCTGTTCATAAAATTCTCGGTGGAGTTTCCGGTTAGTCTGG
CTAAGATGAGTAAGGAGGAAGTCGAGAGGTTGAAGGAGATCTTGCCGAAA
GCCCCGGTGTTTGTGAAAGGGGAGAAAGCGGAGGAAGCGCCTGTGCTGAA
GGCTGGTGATCCTCGTTCTTTTGGCACGGTGGGGTCAGGGAGAGGAGGAG
GGGAGAGGGCGTGGGAGGAGGAGGAGGACGAGGATGAGGAAGATGCGGGG
ATGGGCTTTGGAGGGTACGGGGGAATGCCGAGGGGAGAGCAGGTGCAGTG
CTCGCAACAGTAG back to top
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