NO21G01870.1, NO21G01870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01870.1
Unique NameNO21G01870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1743
Alignment locationchr21:557740..559645 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:557740..559645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01870.1 vs.
Match: EWM22680.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 629.0 bits (1621), Expect = 1.400e-176
Identity = 365/580 (62.93%), Postives = 423/580 (72.93%), Query Frame = 0 
Query:   11 EEEAPRFKVQLAVYDLSQGMARQLGPTLLGMEIEAIYHTGIVVYGKEHFFGGGIVSVPHEEFMASYHMQPFQILELGETEVGEELFNEFLQEVSPRFTAETYDLMSWNCNNFSNEAALFLLGDGIPAHILALPEQVFSSPLGALLRPAIEQMQGAMRPAVPGFHFESYEGGRGAREGAGGGQAGHHHINNPPPLVPPHHMS-PQAPLPAVPLNNPWA--NMRAASTTTTTTSTTSSSSSSSSS----SSSSRGTAAVPVTTGKQQDISAPVESVLARHDKPLLSIDPPAVLKQTVSTVITKLKTLSTAAVTEEGKEDVPLFSPDDIALLEATEAIILQPLTPLPHSLASLLLRTLLPPWPVKAEFFSLSLLRPLFLRPTFPTPALLDHLLAKFSGV--PSSFPSSSSSSFSSPSSVVIAFSGLSNVCAHKAGCKLLLHPSRATLATDAAVAALLDDRPAVRQMAAAFLANIALGMQGGREGGGEGAKEEG-LSDVVVQMVCGTLEGLREDEDMTSVFRRLLCAGRMVKKGGREAGALVVSLGFDELLKEVGREGGKKGGVGKQVQELAREILQMVEEGSK 581
            EEE+PRFKVQLAVYDLSQGMARQLGP LLGMEIEAIYHTG+VVYGKEHFFGGGIVSVPHEEF+ASYHMQPFQ +ELGETEVGE+LF EFLQEVSPRFTAETYDLM WNCNNF+NEAALFLLG GIP HIL LPE+VFSSP+GALLRPAIEQMQG MR AVPGFHFES+EGG             HHH+N PPPLVPPH  + P +PLPAV   NPWA    + AS    TT  TS+S+ +  +        RG A  PV  G+                KPLLS+D PA L+Q++ TV+ KLK L++A    EG+    L SP++ ALL+ TE ++LQPL+PLP +LA LL R LLPPW  +++FF LSLLRPLFLRPTFPT  LLD LL K +     SS P S  S+F+S +S+V+AFS LSN CAHKAG  LLL P RA  A D  VAAL D++PAVRQMAAAFLAN+ALG++      G G +E G LSD+VVQMVCG++EGL ED D TSV RRLLCAGR+V+ G  E  ALV SLG DE+L+EVGR G      G QV ELARE+L +VE G +
Sbjct:   19 EEESPRFKVQLAVYDLSQGMARQLGPALLGMEIEAIYHTGLVVYGKEHFFGGGIVSVPHEEFLASYHMQPFQTMELGETEVGEDLFMEFLQEVSPRFTAETYDLMRWNCNNFTNEAALFLLGTGIPPHILTLPERVFSSPMGALLRPAIEQMQGGMRQAVPGFHFESFEGG-----------GEHHHVNVPPPLVPPHTSAPPPSPLPAVHHPNPWAVPAPQPASVGVNTTGNTSTSTGTQRAEQPRQQEQRGAAPTPVLDGQ---------------SKPLLSVDSPAALRQSLRTVVAKLKLLASAPQDGEGEHGASLLSPEEAALLDETEGLVLQPLSPLPPALAPLLHRCLLPPWSGRSDFFVLSLLRPLFLRPTFPTAPLLDLLLTKLALTIGSSSPPPSPLSAFASRASLVVAFSALSNACAHKAGRSLLLEPERAGQAVDVTVAALRDEQPAVRQMAAAFLANLALGVEKAEVWEGGGNREGGELSDLVVQMVCGSMEGLGEDGDQTSVLRRLLCAGRLVRGGKGEVAALVRSLGLDEVLREVGRSG------GAQVLELARELLSLVEGGGE 566
The following BLAST results are available for this feature:
BLAST of NO21G01870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22680.11.400e-17662.93conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01870NO21G01870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01870.1NO21G01870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01870.1.cds1NO21G01870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01870.1.cds2NO21G01870.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01870.1 ID=NO21G01870.1|Name=NO21G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1743bp
ATGTCCGCCTCAATTTCCGGTGGAGGAGGGGAAGAGGAAGCCCCTCGATT
CAAAGTGCAGCTTGCTGTATATGACTTGTCGCAAGGCATGGCTCGGCAGC
TCGGCCCCACACTCTTGGGTATGGAGATCGAAGCCATCTACCACACCGGA
ATCGTGGTATATGGCAAGGAGCACTTTTTTGGCGGAGGGATTGTGTCAGT
GCCCCACGAGGAGTTCATGGCCTCATATCACATGCAACCTTTTCAGATTC
TGGAATTGGGAGAGACAGAGGTGGGCGAGGAGCTTTTCAATGAGTTTTTG
CAGGAGGTCAGCCCACGGTTCACGGCGGAGACGTATGATCTGATGAGCTG
GAACTGCAATAACTTCAGCAACGAAGCCGCGCTTTTCCTCCTGGGTGACG
GGATTCCAGCCCACATCCTCGCCCTACCCGAACAAGTTTTTTCCTCCCCC
CTCGGCGCCCTCCTTCGTCCCGCTATCGAACAAATGCAGGGCGCCATGCG
CCCCGCCGTCCCCGGCTTTCATTTCGAGTCTTACGAAGGAGGGAGAGGAG
CTAGGGAGGGAGCGGGGGGGGGGCAGGCGGGGCATCATCACATCAACAAC
CCCCCTCCACTTGTCCCCCCGCACCACATGTCGCCGCAAGCGCCCTTACC
GGCAGTACCACTAAACAATCCTTGGGCGAATATGCGCGCAGCTTCTACAA
CGACGACAACAACCAGCACCACGAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGAGGCACTGCTGCTGTCCCGGTGACCACTGGCAAGCA
ACAAGATATCTCAGCGCCCGTTGAATCCGTCCTCGCCCGCCACGACAAAC
CTCTTTTATCCATCGACCCTCCGGCTGTTTTGAAGCAAACCGTCAGCACT
GTCATCACCAAGCTCAAGACACTCTCCACTGCTGCTGTTACCGAGGAAGG
GAAGGAAGACGTGCCCCTCTTCTCCCCCGACGACATCGCCTTGCTCGAAG
CTACCGAAGCCATAATCCTCCAACCTCTCACCCCCCTTCCTCACTCCCTC
GCCTCCCTCCTCCTCCGCACTCTCCTTCCCCCCTGGCCTGTGAAGGCCGA
GTTCTTTTCCCTCTCCCTCCTTCGGCCCCTCTTCCTCCGCCCCACCTTCC
CGACCCCCGCATTGCTGGATCATCTCCTGGCCAAATTTTCTGGTGTCCCT
TCGTCCTTCCCTTCCTCGTCTTCTTCCTCGTTCTCCTCCCCTTCCTCGGT
CGTCATTGCCTTTTCCGGGCTTAGCAATGTCTGCGCGCACAAAGCAGGGT
GTAAGCTGCTTCTCCATCCCTCCCGCGCGACCTTGGCAACAGATGCAGCG
GTGGCAGCGCTGCTAGATGATCGACCAGCAGTAAGGCAAATGGCAGCAGC
GTTCCTCGCCAACATTGCCTTGGGTATGCAGGGAGGGAGGGAGGGAGGGG
GGGAAGGAGCGAAGGAGGAAGGATTGTCGGATGTGGTAGTGCAGATGGTA
TGCGGGACGCTTGAGGGTTTGAGGGAGGATGAAGACATGACCTCGGTGTT
CAGAAGGCTGCTGTGTGCGGGGAGGATGGTGAAGAAGGGAGGGAGGGAGG
CGGGGGCATTGGTGGTGTCCCTGGGGTTTGACGAGTTGCTGAAGGAGGTG
GGGAGGGAGGGAGGGAAGAAGGGGGGGGTGGGGAAGCAGGTGCAAGAGTT
GGCGAGGGAAATACTGCAGATGGTGGAGGAGGGGAGCAAGTAG
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protein sequence of NO21G01870.1

>NO21G01870.1-protein ID=NO21G01870.1-protein|Name=NO21G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp
MSASISGGGGEEEAPRFKVQLAVYDLSQGMARQLGPTLLGMEIEAIYHTG
IVVYGKEHFFGGGIVSVPHEEFMASYHMQPFQILELGETEVGEELFNEFL
QEVSPRFTAETYDLMSWNCNNFSNEAALFLLGDGIPAHILALPEQVFSSP
LGALLRPAIEQMQGAMRPAVPGFHFESYEGGRGAREGAGGGQAGHHHINN
PPPLVPPHHMSPQAPLPAVPLNNPWANMRAASTTTTTTSTTSSSSSSSSS
SSSSRGTAAVPVTTGKQQDISAPVESVLARHDKPLLSIDPPAVLKQTVST
VITKLKTLSTAAVTEEGKEDVPLFSPDDIALLEATEAIILQPLTPLPHSL
ASLLLRTLLPPWPVKAEFFSLSLLRPLFLRPTFPTPALLDHLLAKFSGVP
SSFPSSSSSSFSSPSSVVIAFSGLSNVCAHKAGCKLLLHPSRATLATDAA
VAALLDDRPAVRQMAAAFLANIALGMQGGREGGGEGAKEEGLSDVVVQMV
CGTLEGLREDEDMTSVFRRLLCAGRMVKKGGREAGALVVSLGFDELLKEV
GREGGKKGGVGKQVQELAREILQMVEEGSK*
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mRNA from alignment at chr21:557740..559645-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01870.1 ID=NO21G01870.1|Name=NO21G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1906bp|location=Sequence derived from alignment at chr21:557740..559645- (Nannochloropsis oceanica)
ATGTCCGCCTCAATTTCCGGTGGAGGAGGGGAAGAGGAAGCCCCTCGATT
CAAAGTGCAGCTTGCTGTATATGACTTGTCGCAAGGCATGGCTCGGCAGC
TCGGCCCCACACTCTTGGGTATGGAGATCGAAGCCATCTACCACACCGGA
ATCGTGGTATATGGCAAGGAGCACTTTTTTGGCGGAGGGATTGTGTCAGT
GCCCCACGAGGAGTTCATGGCCTCATATCACATGCAACCTTTTCAGATTC
TGGAATTGGGAGAGACAGAGGTGGGCGAGGAGCTTTTCAATGAGTTTTTG
CAGGAGGTCAGCCCACGGTTCACGGCGGAGACGTATGGTGAGTAAAAAGA
GAAAGTGAAGGTGGGAGGCAAGGAGGACGAGTGTCGCCCATAGTGGTAGA
TTGTTTATGGCAAGTCATCGTCTTTACTGATTTTCATGTACATTCCATTA
ACCTGACCATTCCTTCTTTCCTTTCTTCCCCCTCGCCCTCCCTCCCCAAG
ATCTGATGAGCTGGAACTGCAATAACTTCAGCAACGAAGCCGCGCTTTTC
CTCCTGGGTGACGGGATTCCAGCCCACATCCTCGCCCTACCCGAACAAGT
TTTTTCCTCCCCCCTCGGCGCCCTCCTTCGTCCCGCTATCGAACAAATGC
AGGGCGCCATGCGCCCCGCCGTCCCCGGCTTTCATTTCGAGTCTTACGAA
GGAGGGAGAGGAGCTAGGGAGGGAGCGGGGGGGGGGCAGGCGGGGCATCA
TCACATCAACAACCCCCCTCCACTTGTCCCCCCGCACCACATGTCGCCGC
AAGCGCCCTTACCGGCAGTACCACTAAACAATCCTTGGGCGAATATGCGC
GCAGCTTCTACAACGACGACAACAACCAGCACCACGAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGAGGCACTGCTGCTGTCCCGGTGA
CCACTGGCAAGCAACAAGATATCTCAGCGCCCGTTGAATCCGTCCTCGCC
CGCCACGACAAACCTCTTTTATCCATCGACCCTCCGGCTGTTTTGAAGCA
AACCGTCAGCACTGTCATCACCAAGCTCAAGACACTCTCCACTGCTGCTG
TTACCGAGGAAGGGAAGGAAGACGTGCCCCTCTTCTCCCCCGACGACATC
GCCTTGCTCGAAGCTACCGAAGCCATAATCCTCCAACCTCTCACCCCCCT
TCCTCACTCCCTCGCCTCCCTCCTCCTCCGCACTCTCCTTCCCCCCTGGC
CTGTGAAGGCCGAGTTCTTTTCCCTCTCCCTCCTTCGGCCCCTCTTCCTC
CGCCCCACCTTCCCGACCCCCGCATTGCTGGATCATCTCCTGGCCAAATT
TTCTGGTGTCCCTTCGTCCTTCCCTTCCTCGTCTTCTTCCTCGTTCTCCT
CCCCTTCCTCGGTCGTCATTGCCTTTTCCGGGCTTAGCAATGTCTGCGCG
CACAAAGCAGGGTGTAAGCTGCTTCTCCATCCCTCCCGCGCGACCTTGGC
AACAGATGCAGCGGTGGCAGCGCTGCTAGATGATCGACCAGCAGTAAGGC
AAATGGCAGCAGCGTTCCTCGCCAACATTGCCTTGGGTATGCAGGGAGGG
AGGGAGGGAGGGGGGGAAGGAGCGAAGGAGGAAGGATTGTCGGATGTGGT
AGTGCAGATGGTATGCGGGACGCTTGAGGGTTTGAGGGAGGATGAAGACA
TGACCTCGGTGTTCAGAAGGCTGCTGTGTGCGGGGAGGATGGTGAAGAAG
GGAGGGAGGGAGGCGGGGGCATTGGTGGTGTCCCTGGGGTTTGACGAGTT
GCTGAAGGAGGTGGGGAGGGAGGGAGGGAAGAAGGGGGGGGTGGGGAAGC
AGGTGCAAGAGTTGGCGAGGGAAATACTGCAGATGGTGGAGGAGGGGAGC
AAGTAG
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Coding sequence (CDS) from alignment at chr21:557740..559645-

>NO21G01870.1 ID=NO21G01870.1|Name=NO21G01870.1|organism=Nannochloropsis oceanica|type=CDS|length=1743bp|location=Sequence derived from alignment at chr21:557740..559645- (Nannochloropsis oceanica)
ATGTCCGCCTCAATTTCCGGTGGAGGAGGGGAAGAGGAAGCCCCTCGATT
CAAAGTGCAGCTTGCTGTATATGACTTGTCGCAAGGCATGGCTCGGCAGC
TCGGCCCCACACTCTTGGGTATGGAGATCGAAGCCATCTACCACACCGGA
ATCGTGGTATATGGCAAGGAGCACTTTTTTGGCGGAGGGATTGTGTCAGT
GCCCCACGAGGAGTTCATGGCCTCATATCACATGCAACCTTTTCAGATTC
TGGAATTGGGAGAGACAGAGGTGGGCGAGGAGCTTTTCAATGAGTTTTTG
CAGGAGGTCAGCCCACGGTTCACGGCGGAGACGTATGATCTGATGAGCTG
GAACTGCAATAACTTCAGCAACGAAGCCGCGCTTTTCCTCCTGGGTGACG
GGATTCCAGCCCACATCCTCGCCCTACCCGAACAAGTTTTTTCCTCCCCC
CTCGGCGCCCTCCTTCGTCCCGCTATCGAACAAATGCAGGGCGCCATGCG
CCCCGCCGTCCCCGGCTTTCATTTCGAGTCTTACGAAGGAGGGAGAGGAG
CTAGGGAGGGAGCGGGGGGGGGGCAGGCGGGGCATCATCACATCAACAAC
CCCCCTCCACTTGTCCCCCCGCACCACATGTCGCCGCAAGCGCCCTTACC
GGCAGTACCACTAAACAATCCTTGGGCGAATATGCGCGCAGCTTCTACAA
CGACGACAACAACCAGCACCACGAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGAGGCACTGCTGCTGTCCCGGTGACCACTGGCAAGCA
ACAAGATATCTCAGCGCCCGTTGAATCCGTCCTCGCCCGCCACGACAAAC
CTCTTTTATCCATCGACCCTCCGGCTGTTTTGAAGCAAACCGTCAGCACT
GTCATCACCAAGCTCAAGACACTCTCCACTGCTGCTGTTACCGAGGAAGG
GAAGGAAGACGTGCCCCTCTTCTCCCCCGACGACATCGCCTTGCTCGAAG
CTACCGAAGCCATAATCCTCCAACCTCTCACCCCCCTTCCTCACTCCCTC
GCCTCCCTCCTCCTCCGCACTCTCCTTCCCCCCTGGCCTGTGAAGGCCGA
GTTCTTTTCCCTCTCCCTCCTTCGGCCCCTCTTCCTCCGCCCCACCTTCC
CGACCCCCGCATTGCTGGATCATCTCCTGGCCAAATTTTCTGGTGTCCCT
TCGTCCTTCCCTTCCTCGTCTTCTTCCTCGTTCTCCTCCCCTTCCTCGGT
CGTCATTGCCTTTTCCGGGCTTAGCAATGTCTGCGCGCACAAAGCAGGGT
GTAAGCTGCTTCTCCATCCCTCCCGCGCGACCTTGGCAACAGATGCAGCG
GTGGCAGCGCTGCTAGATGATCGACCAGCAGTAAGGCAAATGGCAGCAGC
GTTCCTCGCCAACATTGCCTTGGGTATGCAGGGAGGGAGGGAGGGAGGGG
GGGAAGGAGCGAAGGAGGAAGGATTGTCGGATGTGGTAGTGCAGATGGTA
TGCGGGACGCTTGAGGGTTTGAGGGAGGATGAAGACATGACCTCGGTGTT
CAGAAGGCTGCTGTGTGCGGGGAGGATGGTGAAGAAGGGAGGGAGGGAGG
CGGGGGCATTGGTGGTGTCCCTGGGGTTTGACGAGTTGCTGAAGGAGGTG
GGGAGGGAGGGAGGGAAGAAGGGGGGGGTGGGGAAGCAGGTGCAAGAGTT
GGCGAGGGAAATACTGCAGATGGTGGAGGAGGGGAGCAAGTAG
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Synonyms
Publications