NO21G01750.1, NO21G01750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01750.1
Unique NameNO21G01750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3348
Alignment locationchr21:523201..526697 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:523201..526697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01750.1 vs.
Match: EWM22621.1 (hypothetical protein Naga_100023g1 [Nannochloropsis gaditana])

HSP 1 Score: 384.4 bits (986), Expect = 3.900e-103
Identity = 200/352 (56.82%), Postives = 242/352 (68.75%), Query Frame = 0 
Query:    9 MGKVFEGQCVSGAEVLWVAVHGFGFALALLTVGTELLHPRAVTAVVAAGGTYFLVLSELTAHSILQEWAPLVAAVLGAGLLSMGGARFASGQSFAPPSLSSGAGPVIILSVLAGYVLAAFQMQALGEKGLEDWIPLAFAAGISGLLANAGAYYSPNEDFFPKGLTSGAGPRMVMLGLGLFVGPSFLGALESHKGTWEQWLALAAAAAGSALFAFGGARYAQGFEFFPEALTRGPVPAAGMALLAAFIYTSFVEHFEARKPGEGVEQWMPLLGAVVGAGVLSHCGARWGAGEAFLPALLESGAYPLVATAGLVIYTVLALHAVNEPKGGLTMLMNLAGAASVVGALSALNKRK 361
            M  + +GQC SG EVLWVA+HGF F   LLT G +LL+  A+TA+VA GG Y +VLSE+ AHS++ EW PLV  V+   LLSMGGAR+A GQ FAPPS +SG GPV+ LSVL GYVLA FQ QAL   GLEDWIPL     +  L+A  G  Y+ NEDF P  LT G+GPR+ ++ LGLFVG SFL  LE +KGTW  WLAL  AAAGSAL A GGARY+ G  F P  +  GP P A MALL A +YT+FVE    R  G+G EQW PL G V+G G LSH GAR GA ++ LP  L+ G    +A  GL +Y+ LALHAV + KGGLTM +N+AGAAS+ G ++ + KRK
Sbjct:    1 MSTILDGQCASGLEVLWVAMHGFVFTFVLLTAGMDLLNAAAMTALVAGGGMYLVVLSEIGAHSMVYEWLPLVVTVVAVSLLSMGGARYAKGQVFAPPSTTSGTGPVLFLSVLGGYVLATFQTQALRASGLEDWIPLMAIGVVCALMAYGGVRYARNEDFLPTSLTRGSGPRISLMALGLFVGTSFLRKLEGYKGTWGSWLALGGAAAGSALLASGGARYSLGGSFLPGTVASGPAPVAVMALLGALVYTAFVERLSLRASGQGAEQWWPLAGVVLGVGALSHAGARMGA-DSTLPTGLKQGWTSPLAMLGLALYSALALHAVEDAKGGLTMWLNVAGAASLAGGVALVGKRK 351
The following BLAST results are available for this feature:
BLAST of NO21G01750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22621.13.900e-10356.82hypothetical protein Naga_100023g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01750NO21G01750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01750.1NO21G01750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01750.1.cds1NO21G01750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01750.1.cds2NO21G01750.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01750.1 ID=NO21G01750.1|Name=NO21G01750.1|organism=Nannochloropsis oceanica|type=mRNA|length=3348bp
TATCGAATATATATATATATATCAATAGTTCTTTTTTTCTGCCGCTCCTA
CACTCCTGTAGAACTATCGCACGCAACCTGACGTCCTCTAGGACTTGCAT
ACGGGGGGGAGCCTTCCACCAATAAAACGTTGCCTATTCACCCCTTATTC
CTTGTCCGAGTTTTTCTAGCGACTTTGACAGGTTTTTCATCAGGCAAAGT
CTCCGGACGGCATACACAGGGCCAGGAGAGGAAGGGTGAGGGGGACAAAA
GAGGAGGTCAGTGGGGATAAAACACATACATTGTCCGCATATCCTGCCGC
GGTTAACCAAACCGAAGATCATGGGGAGGAGCTTCTCCACGGACGGTATC
CTGTAGGTAGCCCTTGTCACTGCCCGCACTGTAGTCGCACTCACACTTGC
ATGCACGCACCAACACAGAGAAGAATGGGCAAGGTTTTCGAAGGCCAGTG
TGTCTCGGGCGCGGAGGTGCTTTGGGTTGCCGTGCATGGCTTTGGTTTTG
CCTTGGCGCTCTTGACCGTGGGAACGGAGCTACTTCATCCCCGCGCGGTG
ACGGCTGTGGTGGCGGCCGGCGGGACGTACTTTTTGGTGTTGTCGGAGCT
CACGGCTCACAGCATTTTGCAAGAATGGGCACCCTTGGTAGCCGCAGTCT
TGGGGGCTGGCCTTCTTTCAATGGGCGGGGCGCGGTTTGCGAGTGGGCAA
TCTTTCGCGCCTCCCAGCTTGTCCTCGGGCGCCGGACCTGTCATAATCCT
TTCCGTCTTGGCTGGCTACGTGCTCGCCGCATTTCAGATGCAGGCATTGG
GTGAAAAAGGCCTGGAGGATTGGATTCCATTGGCTTTTGCAGCGGGAATC
AGCGGCCTTCTGGCGAACGCTGGCGCTTACTACAGCCCTAACGAGGACTT
TTTCCCTAAAGGTCTTACGTCTGGTGCGGGCCCCCGCATGGTCATGCTGG
GTTTGGGTCTCTTTGTCGGTCCCTCCTTTCTCGGGGCCTTGGAAAGCCAC
AAAGGCACGTGGGAGCAGTGGCTTGCCCTGGCAGCCGCGGCGGCAGGATC
GGCGCTTTTCGCATTCGGCGGTGCAAGGTACGCCCAAGGGTTCGAGTTCT
TCCCGGAAGCTCTGACCAGGGGTCCGGTTCCCGCTGCAGGGATGGCCTTG
CTGGCTGCTTTTATCTACACGTCATTCGTTGAACATTTTGAAGCTCGAAA
GCCTGGGGAAGGGGTGGAGCAGTGGATGCCACTGCTCGGGGCGGTGGTGG
GAGCGGGTGTCTTGTCCCATTGCGGCGCGCGTTGGGGTGCAGGAGAGGCC
TTCTTGCCCGCGCTGCTGGAGAGTGGGGCTTACCCTCTTGTGGCCACAGC
GGGCCTGGTTATCTACACAGTATTAGCGTTGCATGCGGTGAATGAACCAA
AGGGTGGGTTGACGATGTTGATGAATTTGGCAGGGGCGGCATCAGTCGTG
GGGGCTTTGTCGGCCCTCAACAAGAGGAAGTTTGTTGCGGCATGAGGATG
CGGAAGGGGGCGGGTGGTTGTACATACTCGAGAGGAAGAGGACGCAGGAG
AGATAGAGAGAAAAAAGAAAACGGTAAATCGTCTGAGAGAAAGAAAAGGC
ATAAAGAGAAGTGGAGTGAAAGCAAGCCGCAAGAAGGCAGCTAAGAGCAA
GGTGGCACACAAGCATATAACAGTGTTCACACTTGCTCTGATTTCCTCTT
ACCCATCACCTCCTATGCCCTCCATCTCCAATAATATGTTATTACACACT
AGCCGAAGCATATTTTTCCTTCCTCACTTCATCGTAATTTTCCTTCGAGT
CTCAACCCTTCACACCCCTCCTTCACCCCCTCCCGCCACCGCCGCAAGCA
ACTTCATCTTCTTTCTCCGTTTGTTGTTCGGCCGTTTCCAGCTTGGCGTC
GCACCCGTGCTCCTCAATCCCTCCACAGAAAAGACCACGCGCCAGGTAGG
AGGGTTGCTTTTGTTGGCCGCCGACTCCAACCAAGGCACCAACGGGTTTT
TCTCCTCCTCCCGGGAGAGCGGGCCGGGGTGGCAGAACCAAACGGAAAAG
AAGGGGGAAGAGTCGTGGCCCGTGCCTTGTGGGTGCTGATACTCATACTT
CTGGGCTGGAACGAGATAGAAAGGTTTTTGAGCTTCGGGGAGAGAGGCGA
TGGCATCCAGGTAGTACGCCTTATTCGCTACGTAGTTGGGGAGGAGCAGA
CAAAAGGGCCTGTCGGAAGCCAGGCAGAATCGCAGAGCCTTTTCTTTGTG
GTCACCCGAGTAGGGGGGATTGGTGACCAAAACATCGTGCCGAGGAATGC
GATTCTCCACCACATCTGCGTAGAAATCCCGCATTTTATTAGTCACGTGC
GAGAAGCCAAGCCGACCCAGAAGGCCGACAACGGCGCCTTGGCAGTAGTA
AGGATCGTAGATATGGAGGGCGGGCTTTCCCTGCTGCTTTCCCAAGGCTC
GGCATAGCCAGACAAGGAAGGCTTCTAAGTCCTGATAGGCGCGGAAGGGA
CTCTCGAAGTGGTCGGCGTACTCGGTGGGGAATGGATAGAGGTGGAGGGA
GGGGCGGGTCGTGGGGGAAGGAGAGGGAAACGTGTGGTGCTGTCGCGGCG
GAGCTTTGGAGCCGGAGTTAGACATGGAAGGCGCGGAAGGTGGATAAGAG
GAAGCTGTAGTAGAGGATGAAAAGGGCAGTGATAGGAGCTTCTTTTTCTT
TTTCTTTTTCTTGTTGCTGGTGGCCGGGGGGGCACGCGATGGGGATGGGT
TATCGACAACTGTGACGTTGAGCGCCACCGGGTCGTCGGAATTGGCCTTG
TGTGGGGAGGAAAACACAGAAGGCGCAGTGGCTGTAGAATTTGTAGACGA
CGGACGCTTTCGCTTCTTGTGCTTTTTGGTGCTACCCTCTTGCAGAAGCT
GAGGGGAGACGTGAGGGTGTTGGTGTAGTGATGGTGGAGAGGGGGGCATG
GGCAGCACTGGCATCTGCTTCTTCCTCTTCTTCTTCTTGTGCTTCTTGTG
CGTGCATGGGTGCGCCTTCGACATGGCCCCTCTTGTCTTGTATGGATGAT
GTGTATGTGTAGGGTAGGGTGAGATAGGAAGGAGGGATCGGTTACCTGGA
GACAGCCGCTCGCTGCCCGATGCTCGCCATCAGAGAGAGTCCTTCGCTAC
CCCATCCCCTCCATACCTACTGAACCCTATAATAATAAATTAAATGATTA
ATGATTAGTCTTAGTCCCATGATCAGCCCGTTGCAATCAGCAGAGACCTT
GCTGTCGACATGTTTATTCCTCGCACTCCTTCTCGTCCCTCATGACGCTT
TCTTGGATGTACTAGCTACTGCTCTGTTCAACCCGACGGACACGACAG
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protein sequence of NO21G01750.1

>NO21G01750.1-protein ID=NO21G01750.1-protein|Name=NO21G01750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MHAPTQRRMGKVFEGQCVSGAEVLWVAVHGFGFALALLTVGTELLHPRAV
TAVVAAGGTYFLVLSELTAHSILQEWAPLVAAVLGAGLLSMGGARFASGQ
SFAPPSLSSGAGPVIILSVLAGYVLAAFQMQALGEKGLEDWIPLAFAAGI
SGLLANAGAYYSPNEDFFPKGLTSGAGPRMVMLGLGLFVGPSFLGALESH
KGTWEQWLALAAAAAGSALFAFGGARYAQGFEFFPEALTRGPVPAAGMAL
LAAFIYTSFVEHFEARKPGEGVEQWMPLLGAVVGAGVLSHCGARWGAGEA
FLPALLESGAYPLVATAGLVIYTVLALHAVNEPKGGLTMLMNLAGAASVV
GALSALNKRKFVAA*
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mRNA from alignment at chr21:523201..526697-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01750.1 ID=NO21G01750.1|Name=NO21G01750.1|organism=Nannochloropsis oceanica|type=mRNA|length=3497bp|location=Sequence derived from alignment at chr21:523201..526697- (Nannochloropsis oceanica)
TATCGAATATATATATATATATCAATAGTTCTTTTTTTCTGCCGCTCCTA
CACTCCTGTAGAACTATCGCACGCAACCTGACGTCCTCTAGGACTTGCAT
ACGGGGGGGAGCCTTCCACCAATAAAACGTTGCCTATTCACCCCTTATTC
CTTGTCCGAGTTTTTCTAGCGACTTTGACAGGTTTTTCATCAGGCAAAGT
CTCCGGACGGCATACACAGGGCCAGGAGAGGAAGGGTGAGGGGGACAAAA
GAGGAGGTCAGTGGGGATAAAACACATACATTGTCCGCATATCCTGCCGC
GGTTAACCAAACCGAAGATCATGGGGAGGAGCTTCTCCACGGACGGTATC
CTGTAGGTAGCCCTTGTCACTGCCCGCACTGTAGTCGCACTCACACTTGC
ATGCGTACGTTTTCTGGCCCGCATTAAAGAAAGGGCTTACTACGCGCAAT
TCCTTTAACTGAAGTCTGACGCTGTCCTTCCCTTGCTCTCCCTTCCATCC
TCAAACGCTTTCCTAACTTTGCTCAATCCTCCCCAACCCTTTCCTGGTCT
CAGACGCACCAACACAGAGAAGAATGGGCAAGGTTTTCGAAGGCCAGTGT
GTCTCGGGCGCGGAGGTGCTTTGGGTTGCCGTGCATGGCTTTGGTTTTGC
CTTGGCGCTCTTGACCGTGGGAACGGAGCTACTTCATCCCCGCGCGGTGA
CGGCTGTGGTGGCGGCCGGCGGGACGTACTTTTTGGTGTTGTCGGAGCTC
ACGGCTCACAGCATTTTGCAAGAATGGGCACCCTTGGTAGCCGCAGTCTT
GGGGGCTGGCCTTCTTTCAATGGGCGGGGCGCGGTTTGCGAGTGGGCAAT
CTTTCGCGCCTCCCAGCTTGTCCTCGGGCGCCGGACCTGTCATAATCCTT
TCCGTCTTGGCTGGCTACGTGCTCGCCGCATTTCAGATGCAGGCATTGGG
TGAAAAAGGCCTGGAGGATTGGATTCCATTGGCTTTTGCAGCGGGAATCA
GCGGCCTTCTGGCGAACGCTGGCGCTTACTACAGCCCTAACGAGGACTTT
TTCCCTAAAGGTCTTACGTCTGGTGCGGGCCCCCGCATGGTCATGCTGGG
TTTGGGTCTCTTTGTCGGTCCCTCCTTTCTCGGGGCCTTGGAAAGCCACA
AAGGCACGTGGGAGCAGTGGCTTGCCCTGGCAGCCGCGGCGGCAGGATCG
GCGCTTTTCGCATTCGGCGGTGCAAGGTACGCCCAAGGGTTCGAGTTCTT
CCCGGAAGCTCTGACCAGGGGTCCGGTTCCCGCTGCAGGGATGGCCTTGC
TGGCTGCTTTTATCTACACGTCATTCGTTGAACATTTTGAAGCTCGAAAG
CCTGGGGAAGGGGTGGAGCAGTGGATGCCACTGCTCGGGGCGGTGGTGGG
AGCGGGTGTCTTGTCCCATTGCGGCGCGCGTTGGGGTGCAGGAGAGGCCT
TCTTGCCCGCGCTGCTGGAGAGTGGGGCTTACCCTCTTGTGGCCACAGCG
GGCCTGGTTATCTACACAGTATTAGCGTTGCATGCGGTGAATGAACCAAA
GGGTGGGTTGACGATGTTGATGAATTTGGCAGGGGCGGCATCAGTCGTGG
GGGCTTTGTCGGCCCTCAACAAGAGGAAGTTTGTTGCGGCATGAGGATGC
GGAAGGGGGCGGGTGGTTGTACATACTCGAGAGGAAGAGGACGCAGGAGA
GATAGAGAGAAAAAAGAAAACGGTAAATCGTCTGAGAGAAAGAAAAGGCA
TAAAGAGAAGTGGAGTGAAAGCAAGCCGCAAGAAGGCAGCTAAGAGCAAG
GTGGCACACAAGCATATAACAGTGTTCACACTTGCTCTGATTTCCTCTTA
CCCATCACCTCCTATGCCCTCCATCTCCAATAATATGTTATTACACACTA
GCCGAAGCATATTTTTCCTTCCTCACTTCATCGTAATTTTCCTTCGAGTC
TCAACCCTTCACACCCCTCCTTCACCCCCTCCCGCCACCGCCGCAAGCAA
CTTCATCTTCTTTCTCCGTTTGTTGTTCGGCCGTTTCCAGCTTGGCGTCG
CACCCGTGCTCCTCAATCCCTCCACAGAAAAGACCACGCGCCAGGTAGGA
GGGTTGCTTTTGTTGGCCGCCGACTCCAACCAAGGCACCAACGGGTTTTT
CTCCTCCTCCCGGGAGAGCGGGCCGGGGTGGCAGAACCAAACGGAAAAGA
AGGGGGAAGAGTCGTGGCCCGTGCCTTGTGGGTGCTGATACTCATACTTC
TGGGCTGGAACGAGATAGAAAGGTTTTTGAGCTTCGGGGAGAGAGGCGAT
GGCATCCAGGTAGTACGCCTTATTCGCTACGTAGTTGGGGAGGAGCAGAC
AAAAGGGCCTGTCGGAAGCCAGGCAGAATCGCAGAGCCTTTTCTTTGTGG
TCACCCGAGTAGGGGGGATTGGTGACCAAAACATCGTGCCGAGGAATGCG
ATTCTCCACCACATCTGCGTAGAAATCCCGCATTTTATTAGTCACGTGCG
AGAAGCCAAGCCGACCCAGAAGGCCGACAACGGCGCCTTGGCAGTAGTAA
GGATCGTAGATATGGAGGGCGGGCTTTCCCTGCTGCTTTCCCAAGGCTCG
GCATAGCCAGACAAGGAAGGCTTCTAAGTCCTGATAGGCGCGGAAGGGAC
TCTCGAAGTGGTCGGCGTACTCGGTGGGGAATGGATAGAGGTGGAGGGAG
GGGCGGGTCGTGGGGGAAGGAGAGGGAAACGTGTGGTGCTGTCGCGGCGG
AGCTTTGGAGCCGGAGTTAGACATGGAAGGCGCGGAAGGTGGATAAGAGG
AAGCTGTAGTAGAGGATGAAAAGGGCAGTGATAGGAGCTTCTTTTTCTTT
TTCTTTTTCTTGTTGCTGGTGGCCGGGGGGGCACGCGATGGGGATGGGTT
ATCGACAACTGTGACGTTGAGCGCCACCGGGTCGTCGGAATTGGCCTTGT
GTGGGGAGGAAAACACAGAAGGCGCAGTGGCTGTAGAATTTGTAGACGAC
GGACGCTTTCGCTTCTTGTGCTTTTTGGTGCTACCCTCTTGCAGAAGCTG
AGGGGAGACGTGAGGGTGTTGGTGTAGTGATGGTGGAGAGGGGGGCATGG
GCAGCACTGGCATCTGCTTCTTCCTCTTCTTCTTCTTGTGCTTCTTGTGC
GTGCATGGGTGCGCCTTCGACATGGCCCCTCTTGTCTTGTATGGATGATG
TGTATGTGTAGGGTAGGGTGAGATAGGAAGGAGGGATCGGTTACCTGGAG
ACAGCCGCTCGCTGCCCGATGCTCGCCATCAGAGAGAGTCCTTCGCTACC
CCATCCCCTCCATACCTACTGAACCCTATAATAATAAATTAAATGATTAA
TGATTAGTCTTAGTCCCATGATCAGCCCGTTGCAATCAGCAGAGACCTTG
CTGTCGACATGTTTATTCCTCGCACTCCTTCTCGTCCCTCATGACGCTTT
CTTGGATGTACTAGCTACTGCTCTGTTCAACCCGACGGACACGACAG
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Coding sequence (CDS) from alignment at chr21:523201..526697-

>NO21G01750.1 ID=NO21G01750.1|Name=NO21G01750.1|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at chr21:523201..526697- (Nannochloropsis oceanica)
ATGCACGCACCAACACAGAGAAGAATGGGCAAGGTTTTCGAAGGCCAGTG
TGTCTCGGGCGCGGAGGTGCTTTGGGTTGCCGTGCATGGCTTTGGTTTTG
CCTTGGCGCTCTTGACCGTGGGAACGGAGCTACTTCATCCCCGCGCGGTG
ACGGCTGTGGTGGCGGCCGGCGGGACGTACTTTTTGGTGTTGTCGGAGCT
CACGGCTCACAGCATTTTGCAAGAATGGGCACCCTTGGTAGCCGCAGTCT
TGGGGGCTGGCCTTCTTTCAATGGGCGGGGCGCGGTTTGCGAGTGGGCAA
TCTTTCGCGCCTCCCAGCTTGTCCTCGGGCGCCGGACCTGTCATAATCCT
TTCCGTCTTGGCTGGCTACGTGCTCGCCGCATTTCAGATGCAGGCATTGG
GTGAAAAAGGCCTGGAGGATTGGATTCCATTGGCTTTTGCAGCGGGAATC
AGCGGCCTTCTGGCGAACGCTGGCGCTTACTACAGCCCTAACGAGGACTT
TTTCCCTAAAGGTCTTACGTCTGGTGCGGGCCCCCGCATGGTCATGCTGG
GTTTGGGTCTCTTTGTCGGTCCCTCCTTTCTCGGGGCCTTGGAAAGCCAC
AAAGGCACGTGGGAGCAGTGGCTTGCCCTGGCAGCCGCGGCGGCAGGATC
GGCGCTTTTCGCATTCGGCGGTGCAAGGTACGCCCAAGGGTTCGAGTTCT
TCCCGGAAGCTCTGACCAGGGGTCCGGTTCCCGCTGCAGGGATGGCCTTG
CTGGCTGCTTTTATCTACACGTCATTCGTTGAACATTTTGAAGCTCGAAA
GCCTGGGGAAGGGGTGGAGCAGTGGATGCCACTGCTCGGGGCGGTGGTGG
GAGCGGGTGTCTTGTCCCATTGCGGCGCGCGTTGGGGTGCAGGAGAGGCC
TTCTTGCCCGCGCTGCTGGAGAGTGGGGCTTACCCTCTTGTGGCCACAGC
GGGCCTGGTTATCTACACAGTATTAGCGTTGCATGCGGTGAATGAACCAA
AGGGTGGGTTGACGATGTTGATGAATTTGGCAGGGGCGGCATCAGTCGTG
GGGGCTTTGTCGGCCCTCAACAAGAGGAAGTTTGTTGCGGCATGA
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Synonyms
Publications