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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr21 | genome | chr21:496666..499576 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G01680.2 vs.
Match: EWM22679.1 (Aromatic-ring hydroxylase-like protein [Nannochloropsis gaditana]) HSP 1 Score: 675.6 bits (1742), Expect = 1.500e-190 Identity = 354/635 (55.75%), Postives = 441/635 (69.45%), Query Frame = 0
Query: 5 QAHFINCRTMELFRHAFHPSLFQRINNCVPPLRLWRHFIYATSVLNGTEIGRVDHFSPTSALASANTSP-APHVLLNEQSPACVAHLSQSRLMPLLYDEVMAAAKKRKEIRFNGSNYQQVVHFGHEVTKFQSHEPGEGQGVQVIVQDKASGHTRVFEGSYLIVANGASSCLRQQAQIDMQGECGIQHLVNIHFSSRALAKATEHRPAMLYFLFNAQVICVLVAHHFPTGEFVAQVPFFPPVQSPDDFDAATVKTLLDAAIGRTLPDLTVHSVQPWTMDCQVAERYRSGRILLAGDAAHRFPPAGGFGMNTGIQDAHNLAWKLALVLNGHVNETFLDTYETERRPVAEHNANLSMRNYTRSLRMPRALGLDAEEAKSLSQTAAAIPMPAPKGFLTSLLALGRRPLRSLEEAGQPYGAACLAKARKILQDGAGLPLLFPQDDLGFQYP---PRGHLIGEDKYKSLAL--IRVGCRLPHIWLQCVHPETGAHLGKVSTTDLADQVHVALTNLDLPCFCNT-PFAILLTSSVMHKAVGPVAQLRWREGEMSLFHVRISSTSPNSILSSCTTETTLAEFSLESMEALCQHIFGSKSHLQLEDKEGEWERRMSYLGAGVLLRPDGHIWAILKSTGELESCF 633
QAHFINCRTME+FRHA+ P+L +RI VP WRHFIYATSVLNGTEIGRVD+F +S + P A H +L+ SPA V HLSQSRLMPLL+DEV+A A R G VV FGHEV + +GVQ++V++K + VF+G Y++ A+G+SS +R +AQI M GE G+QHL+NIHFSSRALA+AT HRPAMLYF++NA+V+CVLVAHH+P+GEFVAQVP+FPP QSP+DF TV+ LLDAAIG DLTVHSV+PW MDCQVA+RYRSGRI LAGDAAHRFPPAGGFGMNTGIQDAHNL+WK+A VL N LDTYETERRPVAE NA+LSM N++RSLR+P+ALGL+ E+AK ++ ++ I K L + A+GR PL+SLE PYG CLAKARKIL+DGA LPLLFP DD+GF+Y PR E + L L ++VG RLPHIWLQC+HP+TG LG +S+TDLADQ+ A + + F + PFAILL+SS K +Q + M L V+I +SS ++ TT EF E +AL +H+ L L D EG WE+R+ + +L+RPDGHI A+L S +L+ F
Sbjct: 49 QAHFINCRTMEIFRHAYSPNLMRRITEIVPDQSCWRHFIYATSVLNGTEIGRVDNFPSSSTSRNTAAPPLAAHQVLDRHSPAKVIHLSQSRLMPLLFDEVLAEAGDTTRSR--GGKGGHVVRFGHEVKDVREVV----EGVQLLVEEKETCDMHVFQGHYVVAADGSSSVIRHKAQISMLGERGVQHLMNIHFSSRALAQATSHRPAMLYFIYNAEVVCVLVAHHYPSGEFVAQVPYFPPAQSPEDFGPVTVRALLDAAIGTAFTDLTVHSVRPWIMDCQVAQRYRSGRIFLAGDAAHRFPPAGGFGMNTGIQDAHNLSWKIASVLQNSANGALLDTYETERRPVAERNASLSMHNFSRSLRVPQALGLNVEQAKDAARISSRISNAMSKALLPYMFAVGRWPLKSLENVRHPYGEMCLAKARKILRDGASLPLLFPTDDIGFRYRPEFPRAQNAEESIHHGLGLDHLQVGGRLPHIWLQCLHPDTGESLGNISSTDLADQLQAAFLSSGIFDFTRSRPFAILLSSSAEEKITLSASQTVLKGWNMPLIGVKIIMRPE---VSSHSSTTTFGEFGQEDQQALFRHLIKKGGCLTLNDIEGNWEQRIHSQASSILVRPDGHIQALLPSDKDLDIDF 674
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO21G01680.2 ID=NO21G01680.2|Name=NO21G01680.2|organism=Nannochloropsis oceanica|type=mRNA|length=2757bp
GTGGAGTTGGAGATGGGTGAAGTGAGTCACGAAAAAGTCTTCGATGGCGC
GCGTGGATAGCCGCGGGGATGGGGGAGATTTGAGACGCACTTATTGTTTT
TTCGGTAAAAAAACAATATCAGTGTGAGGTGCTTCGGCATTTAGATGCTG
ATGATCACCCCTCTTCCCATAATCGCACGGCTGATGTAATGTGTGGTGGT
TTAAGTGGCTATGAGAAGAATGAGGGCTTCTTGCATCAACCTCGGCATTT
TCCATCTTCGGCATAGTTATGTAACACATCGTCAGCGCCTACCTTGCTGT
TACATACCACGTTCCCAAACGCGAGCAAAATGCCTCCCTTTGAGTTGCCT
TGCACATTGGAGACCATCTGGAGCCTTCGCACCACACCTATACAGGGGCA
ACGGGGGCAGCACGTATATAGAACTGTGGGAGAGGAGACGCAGGCCGAGG
TAGGAGGTTGGACCTCTCATCTGCCCCCCTTCATCGGCGCCATGTTGTCC
TCCTTTCGCCGGCGGGGGCATTTGCTATCGTCGCACCCAGCGCTTTCTTC
CAGTACATCAACCTGGGCGTCAACATCTGCCGCCCGCACGACCAAGAAGA
CAGTGCTCATCGCGGGCGCAGGGCCGGTAGGCTTGACTCTGAGTGCTCTC
TTGTCTCGGTATGGCGTTCCGAACCTCGTGTTCGAGAAGAGTCCCACACT
GTCACTCCACCCGCAGGTAAGTGAGAGGTATGGTTTAGGGGAAGAATGAG
ACTTAGACTGGCTGACTCGAGGAAATGCCTACCAAACAGGCCCACTTCAT
CAACTGTCGGACGATGGAGCTTTTTCGGCACGCATTTCATCCTAGCCTAT
TTCAACGCATCAACAATTGCGTGCCTCCATTGCGACTGTGGCGGCACTTC
ATCTACGCGACATCGGTTCTAAATGGCACCGAAATTGGGCGTGTGGACCA
CTTTTCACCTACTTCAGCCCTTGCATCTGCCAACACCTCCCCTGCCCCGC
ATGTACTACTGAACGAGCAGAGCCCAGCATGTGTTGCGCACCTATCACAG
AGCAGGCTTATGCCGTTGTTGTATGACGAAGTCATGGCAGCTGCGAAAAA
AAGAAAGGAGATCCGTTTCAACGGCAGCAATTACCAGCAGGTTGTCCATT
TTGGGCACGAAGTAACAAAGTTTCAATCACACGAGCCGGGCGAGGGGCAA
GGCGTCCAAGTAATTGTCCAGGATAAGGCATCGGGCCACACGCGTGTCTT
TGAGGGCTCCTACCTAATCGTGGCAAATGGCGCGTCGAGCTGCCTCCGCC
AGCAGGCTCAAATTGACATGCAGGGCGAGTGCGGCATCCAGCACTTAGTG
AACATCCATTTCTCTTCCCGTGCCTTGGCAAAGGCCACGGAGCACCGGCC
AGCCATGCTTTATTTTCTCTTCAATGCTCAAGTGATTTGCGTGTTGGTTG
CGCACCACTTTCCCACGGGCGAGTTCGTGGCTCAGGTGCCCTTTTTTCCG
CCGGTCCAATCACCGGACGACTTCGACGCTGCCACCGTCAAAACATTGCT
CGACGCGGCCATTGGGCGGACGTTGCCAGACTTGACGGTACACTCTGTGC
AACCATGGACCATGGACTGCCAAGTCGCCGAGCGGTATCGGTCCGGACGG
ATCTTGCTGGCAGGGGACGCTGCGCATCGTTTCCCCCCAGCAGGTGGGTT
TGGCATGAACACAGGAATTCAGGACGCACACAATTTGGCGTGGAAACTTG
CCTTAGTATTGAATGGTCACGTCAACGAAACATTTCTGGACACATACGAG
ACAGAAAGACGGCCCGTCGCAGAACATAATGCGAATTTAAGCATGCGTAA
CTATACCCGCAGCTTGAGAATGCCGCGGGCGTTGGGCCTGGATGCTGAGG
AAGCGAAGAGTCTGTCTCAGACGGCAGCTGCAATCCCCATGCCTGCGCCC
AAGGGCTTTCTGACATCACTGCTGGCCCTGGGACGTCGCCCGCTGAGATC
GTTAGAGGAGGCTGGACAACCGTACGGCGCTGCGTGCCTGGCCAAAGCTC
GAAAGATACTACAGGACGGCGCTGGTCTGCCGTTGCTCTTTCCACAGGAC
GACCTCGGCTTTCAATATCCCCCGCGAGGCCATTTGATTGGAGAAGACAA
GTACAAAAGCCTAGCTCTGATAAGAGTAGGTTGCCGACTACCTCACATAT
GGCTGCAATGCGTCCATCCTGAGACAGGCGCTCATTTGGGCAAAGTGTCC
ACCACTGACTTAGCCGATCAAGTCCACGTGGCACTCACCAACTTGGACTT
GCCCTGTTTTTGCAACACTCCTTTTGCTATACTCCTTACATCCTCTGTGA
TGCACAAAGCTGTCGGCCCTGTCGCTCAACTAAGGTGGAGAGAAGGCGAG
ATGTCTCTGTTCCACGTGCGAATTTCATCCACGTCACCAAATTCCATACT
CTCTTCTTGCACGACAGAGACTACGTTGGCAGAATTTTCGCTAGAAAGTA
TGGAGGCGCTATGCCAACATATATTTGGGTCGAAAAGTCACCTGCAGCTC
GAGGACAAGGAAGGTGAATGGGAGCGACGCATGTCTTATTTAGGGGCGGG
TGTCTTGTTGAGACCAGACGGGCATATTTGGGCCATACTAAAGAGCACGG
GAGAACTAGAGTCGTGCTTTCAGGAGGAGTTTCAGATTGTGTGGTGAAAA
ATACAGGGAGTGTTCACACTTAAAGCAACAAAGCACACAACATGAGCGAA
TGATGGG back to topprotein sequence of NO21G01680.2 >NO21G01680.2-protein ID=NO21G01680.2-protein|Name=NO21G01680.2|organism=Nannochloropsis oceanica|type=polypeptide|length=641bp
MPTKQAHFINCRTMELFRHAFHPSLFQRINNCVPPLRLWRHFIYATSVLN
GTEIGRVDHFSPTSALASANTSPAPHVLLNEQSPACVAHLSQSRLMPLLY
DEVMAAAKKRKEIRFNGSNYQQVVHFGHEVTKFQSHEPGEGQGVQVIVQD
KASGHTRVFEGSYLIVANGASSCLRQQAQIDMQGECGIQHLVNIHFSSRA
LAKATEHRPAMLYFLFNAQVICVLVAHHFPTGEFVAQVPFFPPVQSPDDF
DAATVKTLLDAAIGRTLPDLTVHSVQPWTMDCQVAERYRSGRILLAGDAA
HRFPPAGGFGMNTGIQDAHNLAWKLALVLNGHVNETFLDTYETERRPVAE
HNANLSMRNYTRSLRMPRALGLDAEEAKSLSQTAAAIPMPAPKGFLTSLL
ALGRRPLRSLEEAGQPYGAACLAKARKILQDGAGLPLLFPQDDLGFQYPP
RGHLIGEDKYKSLALIRVGCRLPHIWLQCVHPETGAHLGKVSTTDLADQV
HVALTNLDLPCFCNTPFAILLTSSVMHKAVGPVAQLRWREGEMSLFHVRI
SSTSPNSILSSCTTETTLAEFSLESMEALCQHIFGSKSHLQLEDKEGEWE
RRMSYLGAGVLLRPDGHIWAILKSTGELESCFQEEFQIVW* back to topmRNA from alignment at chr21:496666..499576+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO21G01680.2 ID=NO21G01680.2|Name=NO21G01680.2|organism=Nannochloropsis oceanica|type=mRNA|length=2911bp|location=Sequence derived from alignment at chr21:496666..499576+ (Nannochloropsis oceanica)
GTGGAGTTGGAGATGGGTGAAGTGAGTCACGAAAAAGTCTTCGATGGCGC
GCGTGGATAGCCGCGGGGATGGGGGAGATTTGAGACGCACTTATTGTTTT
TTCGGTAAAAAAACAATATCAGTGTGAGGTGCTTCGGCATTTAGATGCTG
ATGATCACCCCTCTTCCCATAATCGCACGGCTGATGTAATGTGTGGTGGT
TTAAGTGGCTATGAGAAGAATGAGGGCTTCTTGCATCAACCTCGGCATTT
TCCATCTTCGGCATAGTTATGTAACACATCGTCAGCGCCTACCTTGCTGT
TACATACCACGTTCCCAAACGCGAGCAAAATGCCTCCCTTTGAGTTGCCT
TGCACATTGGAGACCATCTGGAGCCTTCGCACCACACCTATACAGGGGCA
ACGGGGGCAGCACGTATATAGAACTGTGGGAGAGGAGACGCAGGCCGAGG
TAGGAGGTTGGACCTCTCATCTGCCCCCCTTCATCGGCGCCATGTTGTCC
TCCTTTCGCCGGCGGGGGCATTTGCTATCGTCGCACCCAGCGCTTTCTTC
CAGTACATCAACCTGGGCGTCAACATCTGCCGCCCGCACGACCAAGAAGA
CAGTGCTCATCGCGGGCGCAGGGCCGGTAGGCTTGACTCTGAGTGCTCTC
TTGTCTCGGTATGGCGTTCCGAACCTCGTGTTCGAGAAGAGTCCCACACT
GTCACTCCACCCGCAGGTAAGTGAGAGGTATGGTTTAGGGGAAGAATGAG
ACTTAGACTGGCTGACTCGAGGAAATGCCTACCAAACAGGCCCACTTCAT
CAACTGTCGGACGATGGAGCTTTTTCGGCACGCATTTCATCCTAGCCTAT
TTCAACGCATCAACAATTGCGTGCCTCCATTGCGACTGTGGCGGCACTTC
ATCTACGCGACATCGGTTCTAAATGGCACCGAAATTGGGCGTGTGGACCA
CTTTTCACCTACTTCAGCCCTTGCATCTGCCAACACCTCCCCTGCCCCGC
ATGTACTACTGAACGAGCAGAGCCCAGCATGTGTTGCGCACCTATCACAG
AGCAGGCTTATGCCGTTGTTGTATGACGAAGTCATGGCAGCTGCGAAAAA
AAGAAAGGAGATCCGTTTCAACGGCAGCAATTACCAGCAGGTTGTCCATT
TTGGGCACGAAGTAACAAAGTTTCAATCACACGAGCCGGGCGAGGGGCAA
GGCGTCCAAGTAATTGTCCAGGATAAGGCATCGGGCCACACGCGTGTCTT
TGAGGGCTCCTACCTAATCGTGGCAAATGGCGCGTCGAGCTGCCTCCGCC
AGCAGGCTCAAATTGACATGCAGGGCGAGTGCGGCATCCAGCACTTAGTG
AACATCCATTTCTCTTCCCGTGCCTTGGCAAAGGCCACGGAGCACCGGCC
AGCCATGCTTTATTTTCTCTTCAATGCTCAAGTGATTTGCGTGTTGGTTG
CGCACCACTTTCCCACGGGCGAGTTCGTGGCTCAGGTGCCCTTTTTTCCG
CCGGTCCAATCACCGGACGACTTCGACGCTGCCACCGTCAAAACATTGCT
CGACGCGGCCATTGGGCGGACGTTGCCAGACTTGACGGTACACTCTGTGC
AACCATGGACCATGGACTGCCAAGTCGCCGAGCGGTATCGGTCCGGACGG
ATCTTGCTGGCAGGGGACGCTGCGCATCGTTTCCCCCCAGCAGGTGGGTT
TGGCATGAACACAGGAATTCAGGACGCACACAATTTGGCGTGGAAACTTG
CCTTAGTATTGAATGGTCACGTCAACGAAACATTTCTGGACACATACGAG
GTAAGGTGAAAAGGCGGGCTTTGGTCGGAGAAGCCGTGAAGAATTCATCC
TGCATGGCAGGCAATCCCATCATGACACCAGACATTGTCTCCTCGTTCTT
CAACTGATGAAATTGAGTGATCCATACGAACGATTGCACACAACATCCAC
ACAGACAGAAAGACGGCCCGTCGCAGAACATAATGCGAATTTAAGCATGC
GTAACTATACCCGCAGCTTGAGAATGCCGCGGGCGTTGGGCCTGGATGCT
GAGGAAGCGAAGAGTCTGTCTCAGACGGCAGCTGCAATCCCCATGCCTGC
GCCCAAGGGCTTTCTGACATCACTGCTGGCCCTGGGACGTCGCCCGCTGA
GATCGTTAGAGGAGGCTGGACAACCGTACGGCGCTGCGTGCCTGGCCAAA
GCTCGAAAGATACTACAGGACGGCGCTGGTCTGCCGTTGCTCTTTCCACA
GGACGACCTCGGCTTTCAATATCCCCCGCGAGGCCATTTGATTGGAGAAG
ACAAGTACAAAAGCCTAGCTCTGATAAGAGTAGGTTGCCGACTACCTCAC
ATATGGCTGCAATGCGTCCATCCTGAGACAGGCGCTCATTTGGGCAAAGT
GTCCACCACTGACTTAGCCGATCAAGTCCACGTGGCACTCACCAACTTGG
ACTTGCCCTGTTTTTGCAACACTCCTTTTGCTATACTCCTTACATCCTCT
GTGATGCACAAAGCTGTCGGCCCTGTCGCTCAACTAAGGTGGAGAGAAGG
CGAGATGTCTCTGTTCCACGTGCGAATTTCATCCACGTCACCAAATTCCA
TACTCTCTTCTTGCACGACAGAGACTACGTTGGCAGAATTTTCGCTAGAA
AGTATGGAGGCGCTATGCCAACATATATTTGGGTCGAAAAGTCACCTGCA
GCTCGAGGACAAGGAAGGTGAATGGGAGCGACGCATGTCTTATTTAGGGG
CGGGTGTCTTGTTGAGACCAGACGGGCATATTTGGGCCATACTAAAGAGC
ACGGGAGAACTAGAGTCGTGCTTTCAGGAGGAGTTTCAGATTGTGTGGTG
AAAAATACAGGGAGTGTTCACACTTAAAGCAACAAAGCACACAACATGAG
CGAATGATGGG back to topCoding sequence (CDS) from alignment at chr21:496666..499576+ >NO21G01680.2 ID=NO21G01680.2|Name=NO21G01680.2|organism=Nannochloropsis oceanica|type=CDS|length=1923bp|location=Sequence derived from alignment at chr21:496666..499576+ (Nannochloropsis oceanica)
ATGCCTACCAAACAGGCCCACTTCATCAACTGTCGGACGATGGAGCTTTT
TCGGCACGCATTTCATCCTAGCCTATTTCAACGCATCAACAATTGCGTGC
CTCCATTGCGACTGTGGCGGCACTTCATCTACGCGACATCGGTTCTAAAT
GGCACCGAAATTGGGCGTGTGGACCACTTTTCACCTACTTCAGCCCTTGC
ATCTGCCAACACCTCCCCTGCCCCGCATGTACTACTGAACGAGCAGAGCC
CAGCATGTGTTGCGCACCTATCACAGAGCAGGCTTATGCCGTTGTTGTAT
GACGAAGTCATGGCAGCTGCGAAAAAAAGAAAGGAGATCCGTTTCAACGG
CAGCAATTACCAGCAGGTTGTCCATTTTGGGCACGAAGTAACAAAGTTTC
AATCACACGAGCCGGGCGAGGGGCAAGGCGTCCAAGTAATTGTCCAGGAT
AAGGCATCGGGCCACACGCGTGTCTTTGAGGGCTCCTACCTAATCGTGGC
AAATGGCGCGTCGAGCTGCCTCCGCCAGCAGGCTCAAATTGACATGCAGG
GCGAGTGCGGCATCCAGCACTTAGTGAACATCCATTTCTCTTCCCGTGCC
TTGGCAAAGGCCACGGAGCACCGGCCAGCCATGCTTTATTTTCTCTTCAA
TGCTCAAGTGATTTGCGTGTTGGTTGCGCACCACTTTCCCACGGGCGAGT
TCGTGGCTCAGGTGCCCTTTTTTCCGCCGGTCCAATCACCGGACGACTTC
GACGCTGCCACCGTCAAAACATTGCTCGACGCGGCCATTGGGCGGACGTT
GCCAGACTTGACGGTACACTCTGTGCAACCATGGACCATGGACTGCCAAG
TCGCCGAGCGGTATCGGTCCGGACGGATCTTGCTGGCAGGGGACGCTGCG
CATCGTTTCCCCCCAGCAGGTGGGTTTGGCATGAACACAGGAATTCAGGA
CGCACACAATTTGGCGTGGAAACTTGCCTTAGTATTGAATGGTCACGTCA
ACGAAACATTTCTGGACACATACGAGACAGAAAGACGGCCCGTCGCAGAA
CATAATGCGAATTTAAGCATGCGTAACTATACCCGCAGCTTGAGAATGCC
GCGGGCGTTGGGCCTGGATGCTGAGGAAGCGAAGAGTCTGTCTCAGACGG
CAGCTGCAATCCCCATGCCTGCGCCCAAGGGCTTTCTGACATCACTGCTG
GCCCTGGGACGTCGCCCGCTGAGATCGTTAGAGGAGGCTGGACAACCGTA
CGGCGCTGCGTGCCTGGCCAAAGCTCGAAAGATACTACAGGACGGCGCTG
GTCTGCCGTTGCTCTTTCCACAGGACGACCTCGGCTTTCAATATCCCCCG
CGAGGCCATTTGATTGGAGAAGACAAGTACAAAAGCCTAGCTCTGATAAG
AGTAGGTTGCCGACTACCTCACATATGGCTGCAATGCGTCCATCCTGAGA
CAGGCGCTCATTTGGGCAAAGTGTCCACCACTGACTTAGCCGATCAAGTC
CACGTGGCACTCACCAACTTGGACTTGCCCTGTTTTTGCAACACTCCTTT
TGCTATACTCCTTACATCCTCTGTGATGCACAAAGCTGTCGGCCCTGTCG
CTCAACTAAGGTGGAGAGAAGGCGAGATGTCTCTGTTCCACGTGCGAATT
TCATCCACGTCACCAAATTCCATACTCTCTTCTTGCACGACAGAGACTAC
GTTGGCAGAATTTTCGCTAGAAAGTATGGAGGCGCTATGCCAACATATAT
TTGGGTCGAAAAGTCACCTGCAGCTCGAGGACAAGGAAGGTGAATGGGAG
CGACGCATGTCTTATTTAGGGGCGGGTGTCTTGTTGAGACCAGACGGGCA
TATTTGGGCCATACTAAAGAGCACGGGAGAACTAGAGTCGTGCTTTCAGG
AGGAGTTTCAGATTGTGTGGTGA back to top
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