NO21G01670.1, NO21G01670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01670.1
Unique NameNO21G01670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1224
Alignment locationchr21:495222..497032 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:495222..497032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01670.1 vs.
Match: EWM22667.1 (Uncharacterized domain protein UPF0066, YaeB-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 513.8 bits (1322), Expect = 4.700e-142
Identity = 249/353 (70.54%), Postives = 298/353 (84.42%), Query Frame = 0 
Query:   27 MPSLPKTAVIGGGALLWLLISCYAVLQSLDANRQLTDTRKRLKKEQELRKMERTGRTKAERRLRLELKALIRGQTDGGVNLKPVARMQSPFKGRCGTPRQGLLAPNAKGQIKLEPGVCRTSLDQLDKFTHLWVIFLFDQNTNWTDALCSDSQRFTYTAKIAPPRLFGKRVGVFSTRSPHRPNPIGLSVVAIDSVDEEGGIIHVSGVDLTDGTPILDLKPYIPYDLVLDHQVPSWVMADDVPAWQLRIAPEAEIALSELAMERNSPFYSTYEDLVALLRDVLLQDVRSIHKGRGTTVKAGNGTKSGNEAPESFTCNIDDIAIEFVALKDAIHILRCFEECRDALDPEPADDAVV 380
            MPS+ K   +    +L + I+C + ++ L     L + R++L++E+ELR MER GRTKAERRLR ELKALIRGQT+GGV LKP+AR+ SPFKGRCGTPRQGLLAPNA+GQIKL+ G+C+TSLDQL+ FTH+WVIFLFDQNTNWTDALCS+S+ FTYTAKIAPPRLFGKRVGVFSTRSPHRPNPIGLSVVAI +VDE+ G+IH+SGVDLTDGTPILD+KPYIPYD+VL+H+VP+WV+ +D+PAWQL++ PEAE  L ELA ER SPFYSTYE+L ALLRDVLLQDVRSIHKGRGT V+  +  K G    E FTCNIDDIA+EFVAL++AI I+RC EE R+ALDP P D+ +V
Sbjct:    1 MPSISKATYLW---ILTIAIACCSAIKCLAVQHDLKEAREKLRREEELRNMERAGRTKAERRLRCELKALIRGQTNGGVCLKPIARISSPFKGRCGTPRQGLLAPNARGQIKLQSGICKTSLDQLNAFTHMWVIFLFDQNTNWTDALCSESESFTYTAKIAPPRLFGKRVGVFSTRSPHRPNPIGLSVVAIQAVDEKAGVIHISGVDLTDGTPILDIKPYIPYDVVLEHKVPAWVVCEDLPAWQLQVMPEAEAVLRELATERGSPFYSTYEELRALLRDVLLQDVRSIHKGRGTVVEDKSSLKGGANFSEPFTCNIDDIAVEFVALQNAIQIIRCSEEYRNALDPGPEDNKLV 350
The following BLAST results are available for this feature:
BLAST of NO21G01670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
100200300400500600700800900100011001200Expect = 4.70e-142 / Id = 70.54SequenceEWM22667.1
Match NameE-valueIdentityDescription
EWM22667.14.700e-14270.54Uncharacterized domain protein UPF0066, YaeB-like ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01670NO21G01670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01670.1NO21G01670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01670.1.cds1NO21G01670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01670.1.cds2NO21G01670.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01670.1.cds3NO21G01670.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01670.1 ID=NO21G01670.1|Name=NO21G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1224bp
ATGGTCTCCAATGTGCAAGGCAACTCAAAGGGAGGCATTTTGCTCGCGTT
TGGGAACGTGGTATGTAACAGCAAGGCAATGCCATCCCTCCCAAAAACCG
CGGTAATTGGCGGGGGCGCGTTACTTTGGCTGCTGATCTCGTGCTATGCT
GTGCTTCAATCACTCGACGCGAACCGACAGCTAACAGACACGCGAAAGAG
GCTCAAGAAGGAGCAAGAGCTGAGAAAAATGGAGCGCACAGGGCGCACGA
AGGCGGAGCGACGTCTACGTCTGGAATTGAAGGCATTAATCAGGGGTCAG
ACAGACGGTGGGGTCAATTTGAAGCCTGTGGCACGCATGCAGTCGCCCTT
CAAAGGCCGGTGCGGCACTCCGCGGCAGGGTCTCCTCGCACCCAATGCCA
AGGGTCAGATTAAACTCGAACCTGGAGTCTGCCGGACGTCCCTGGACCAG
CTAGACAAATTTACGCACCTCTGGGTCATTTTTCTCTTTGACCAAAATAC
AAACTGGACCGATGCCCTGTGTTCCGACAGCCAACGCTTCACCTATACCG
CTAAGATCGCACCCCCGCGGCTGTTCGGAAAGCGGGTGGGTGTCTTTAGT
ACTCGCAGCCCACATCGGCCAAACCCGATCGGCCTCAGCGTGGTGGCTAT
TGACTCAGTGGATGAAGAGGGCGGCATCATCCACGTCTCAGGAGTGGACT
TGACCGATGGCACGCCCATCCTGGACCTGAAGCCCTACATCCCCTACGAC
TTAGTTTTGGATCATCAGGTTCCAAGCTGGGTCATGGCCGACGATGTGCC
AGCGTGGCAACTTCGGATTGCACCTGAGGCAGAGATCGCGCTCTCGGAGC
TGGCGATGGAGCGGAACTCACCCTTCTACTCTACTTACGAGGACCTGGTG
GCCCTCTTGAGGGACGTGCTGCTGCAGGACGTGCGCAGCATTCACAAGGG
TCGCGGCACGACGGTCAAGGCTGGCAACGGCACCAAATCAGGAAATGAGG
CCCCCGAGTCCTTCACCTGCAATATCGATGACATCGCCATAGAATTTGTA
GCCTTAAAAGACGCCATTCACATTCTGCGCTGTTTCGAGGAGTGCCGCGA
CGCGCTGGATCCAGAGCCAGCAGACGACGCGGTGGTAGCTGCCGAGGCGA
CAGGTACATTGCAACGAAAAGATAAAGCCGTCAGCAAACGGGCTGCTTCC
ACTACTTCGTCGTGCTTGGAATAA
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protein sequence of NO21G01670.1

>NO21G01670.1-protein ID=NO21G01670.1-protein|Name=NO21G01670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp
MVSNVQGNSKGGILLAFGNVVCNSKAMPSLPKTAVIGGGALLWLLISCYA
VLQSLDANRQLTDTRKRLKKEQELRKMERTGRTKAERRLRLELKALIRGQ
TDGGVNLKPVARMQSPFKGRCGTPRQGLLAPNAKGQIKLEPGVCRTSLDQ
LDKFTHLWVIFLFDQNTNWTDALCSDSQRFTYTAKIAPPRLFGKRVGVFS
TRSPHRPNPIGLSVVAIDSVDEEGGIIHVSGVDLTDGTPILDLKPYIPYD
LVLDHQVPSWVMADDVPAWQLRIAPEAEIALSELAMERNSPFYSTYEDLV
ALLRDVLLQDVRSIHKGRGTTVKAGNGTKSGNEAPESFTCNIDDIAIEFV
ALKDAIHILRCFEECRDALDPEPADDAVVAAEATGTLQRKDKAVSKRAAS
TTSSCLE*
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mRNA from alignment at chr21:495222..497032-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01670.1 ID=NO21G01670.1|Name=NO21G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1811bp|location=Sequence derived from alignment at chr21:495222..497032- (Nannochloropsis oceanica)
ATGGTCTCCAATGTGCAAGGCAACTCAAAGGGAGGCATTTTGCTCGCGTT
TGGGAACGTGGTATGTAACAGCAAGGTAGGCGCTGACGATGTGTTACATA
ACTATGCCGAAGATGGAAAATGCCGAGGTTGATGCAAGAAGCCCTCATTC
TTCTCATAGCCACTTAAACCACCACACATTACATCAGCCGTGCGATTATG
GGAAGAGGGGTGATCATCAGCATCTAAATGCCGAAGCACCTCACACTGAT
ATTGTTTTTTTACCGAAAAAACAATAAGTGCGTCTCAAATCTCCCCCATC
CCCGCGGCTATCCACGCGCGCCATCGAAGACTTTTTCGTGACTCACTTCA
CCCATCTCCAACTCCACAATCGACAGGCAATGCCATCCCTCCCAAAAACC
GCGGTAATTGGCGGGGGCGCGTTACTTTGGCTGCTGATCTCGTGCTATGC
TGTGCTTCAATCACTCGACGCGAACCGACAGCTAACAGACACGCGAAAGA
GGCTCAAGAAGGAGCAAGAGCTGAGAAAAATGGAGCGCACAGGGCGCACG
AAGGCGGAGCGACGTCTACGTCTGGAATTGAAGGCATTAATCAGGGGTCA
GACAGACGGTGGGGTCAATTTGAAGCCTGTGGCACGCATGCAGTCGCCCT
TCAAAGGCCGGTGCGGCACTCCGCGGCAGGGTCTCCTCGCACCCAATGCC
AAGTACGTCGTTTAAAGAGAACAAGGAACGTGTGCGTGCGTGTATGTACA
TGATACCTTCAGGGAAGTGAGAGGGACTTACATCACCATCTCGTGAGCAC
GTGGCCGCTGCTGCTGCTGCTAGTCGCCTTGTTATCCAATCTTCCCCGTC
TGATTCCTCTCGGAGGCCAAAGATGGTAGATATACTTTTCCTACTGTGGA
CTCAACATTAGGCATAGGTATTTGAAAGTTTCCATACCGATATCCTTTCT
TCTATTTCTCTTACAATTCTTCCTTCAATCATAATCAGGGGTCAGATTAA
ACTCGAACCTGGAGTCTGCCGGACGTCCCTGGACCAGCTAGACAAATTTA
CGCACCTCTGGGTCATTTTTCTCTTTGACCAAAATACAAACTGGACCGAT
GCCCTGTGTTCCGACAGCCAACGCTTCACCTATACCGCTAAGATCGCACC
CCCGCGGCTGTTCGGAAAGCGGGTGGGTGTCTTTAGTACTCGCAGCCCAC
ATCGGCCAAACCCGATCGGCCTCAGCGTGGTGGCTATTGACTCAGTGGAT
GAAGAGGGCGGCATCATCCACGTCTCAGGAGTGGACTTGACCGATGGCAC
GCCCATCCTGGACCTGAAGCCCTACATCCCCTACGACTTAGTTTTGGATC
ATCAGGTTCCAAGCTGGGTCATGGCCGACGATGTGCCAGCGTGGCAACTT
CGGATTGCACCTGAGGCAGAGATCGCGCTCTCGGAGCTGGCGATGGAGCG
GAACTCACCCTTCTACTCTACTTACGAGGACCTGGTGGCCCTCTTGAGGG
ACGTGCTGCTGCAGGACGTGCGCAGCATTCACAAGGGTCGCGGCACGACG
GTCAAGGCTGGCAACGGCACCAAATCAGGAAATGAGGCCCCCGAGTCCTT
CACCTGCAATATCGATGACATCGCCATAGAATTTGTAGCCTTAAAAGACG
CCATTCACATTCTGCGCTGTTTCGAGGAGTGCCGCGACGCGCTGGATCCA
GAGCCAGCAGACGACGCGGTGGTAGCTGCCGAGGCGACAGGTACATTGCA
ACGAAAAGATAAAGCCGTCAGCAAACGGGCTGCTTCCACTACTTCGTCGT
GCTTGGAATAA
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Coding sequence (CDS) from alignment at chr21:495222..497032-

>NO21G01670.1 ID=NO21G01670.1|Name=NO21G01670.1|organism=Nannochloropsis oceanica|type=CDS|length=1224bp|location=Sequence derived from alignment at chr21:495222..497032- (Nannochloropsis oceanica)
ATGGTCTCCAATGTGCAAGGCAACTCAAAGGGAGGCATTTTGCTCGCGTT
TGGGAACGTGGTATGTAACAGCAAGGCAATGCCATCCCTCCCAAAAACCG
CGGTAATTGGCGGGGGCGCGTTACTTTGGCTGCTGATCTCGTGCTATGCT
GTGCTTCAATCACTCGACGCGAACCGACAGCTAACAGACACGCGAAAGAG
GCTCAAGAAGGAGCAAGAGCTGAGAAAAATGGAGCGCACAGGGCGCACGA
AGGCGGAGCGACGTCTACGTCTGGAATTGAAGGCATTAATCAGGGGTCAG
ACAGACGGTGGGGTCAATTTGAAGCCTGTGGCACGCATGCAGTCGCCCTT
CAAAGGCCGGTGCGGCACTCCGCGGCAGGGTCTCCTCGCACCCAATGCCA
AGGGTCAGATTAAACTCGAACCTGGAGTCTGCCGGACGTCCCTGGACCAG
CTAGACAAATTTACGCACCTCTGGGTCATTTTTCTCTTTGACCAAAATAC
AAACTGGACCGATGCCCTGTGTTCCGACAGCCAACGCTTCACCTATACCG
CTAAGATCGCACCCCCGCGGCTGTTCGGAAAGCGGGTGGGTGTCTTTAGT
ACTCGCAGCCCACATCGGCCAAACCCGATCGGCCTCAGCGTGGTGGCTAT
TGACTCAGTGGATGAAGAGGGCGGCATCATCCACGTCTCAGGAGTGGACT
TGACCGATGGCACGCCCATCCTGGACCTGAAGCCCTACATCCCCTACGAC
TTAGTTTTGGATCATCAGGTTCCAAGCTGGGTCATGGCCGACGATGTGCC
AGCGTGGCAACTTCGGATTGCACCTGAGGCAGAGATCGCGCTCTCGGAGC
TGGCGATGGAGCGGAACTCACCCTTCTACTCTACTTACGAGGACCTGGTG
GCCCTCTTGAGGGACGTGCTGCTGCAGGACGTGCGCAGCATTCACAAGGG
TCGCGGCACGACGGTCAAGGCTGGCAACGGCACCAAATCAGGAAATGAGG
CCCCCGAGTCCTTCACCTGCAATATCGATGACATCGCCATAGAATTTGTA
GCCTTAAAAGACGCCATTCACATTCTGCGCTGTTTCGAGGAGTGCCGCGA
CGCGCTGGATCCAGAGCCAGCAGACGACGCGGTGGTAGCTGCCGAGGCGA
CAGGTACATTGCAACGAAAAGATAAAGCCGTCAGCAAACGGGCTGCTTCC
ACTACTTCGTCGTGCTTGGAATAA
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Synonyms
Publications